mRNA_P-wetherbeei_contig14149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14149.1.1
Unique NamemRNA_P-wetherbeei_contig14149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14149.1.1 vs. uniprot
Match: A0A7C4XTU9_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XTU9_9HYPH)

HSP 1 Score: 68.2 bits (165), Expect = 1.080e-13
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 MGRRANRDDEVTLQIIEGIEDADDPRLAWGAVKRRIETLRAAGHEVPEALVVAERQLMTDFMAESQGR 204
            MG R N+ D+  L+ +  +E+ +DPR A+  ++ RI   R  G  VPE L VAERQLMT+ MA+SQGR
Sbjct:    1 MGPRTNQVDKDELRFLGSLEEEEDPRKAYAELQDRIRAYRRTGKAVPEPLAVAERQLMTEMMAQSQGR 68
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BLAST of mRNA_P-wetherbeei_contig14149.1.1 vs. uniprot
Match: A0A2W4MVQ6_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MVQ6_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 8.410e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 MGRRANRDDEVTLQIIEGIEDADDPRLAWGAVKRRIETLRAAGHEVPEALVVAERQLMTDFMAESQGR 204
            MG+R+       ++++  +++ DD R A+  VK RI    AAG  VPEAL+  ERQLMT+ MAESQGR
Sbjct:    1 MGKRSEGLPADCVELLSELDNFDDLRDAYARVKDRIREYSAAGRPVPEALLRCERQLMTELMAESQGR 68
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BLAST of mRNA_P-wetherbeei_contig14149.1.1 vs. uniprot
Match: A0A101VGT9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VGT9_9PROT)

HSP 1 Score: 46.2 bits (108), Expect = 4.660e-5
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   55 IEDADDPRLAWGAVKRRIETLRAAGHEVPEALVVAERQLMTDFMAESQGR 204
            I++ DDPR  + AV+  I   R AG E+PE L   ER ++T+ ++ SQGR
Sbjct:   16 IDEVDDPRECYAAVRDCIRRHREAGEEIPEDLERLERVMLTECLSASQGR 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C4XTU9_9HYPH1.080e-1348.53Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2W4MVQ6_9PROT8.410e-1147.06Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A101VGT9_9PROT4.660e-544.00Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14149contigP-wetherbeei_contig14149:36..242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.7421644-CDS-P-wetherbeei_contig14149:35..2421683186010.7421644-CDS-P-wetherbeei_contig14149:35..242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14149 36..242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14149.1.1prot_P-wetherbeei_contig14149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14149 36..242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14149.1.1

>prot_P-wetherbeei_contig14149.1.1 ID=prot_P-wetherbeei_contig14149.1.1|Name=mRNA_P-wetherbeei_contig14149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MGRRANRDDEVTLQIIEGIEDADDPRLAWGAVKRRIETLRAAGHEVPEAL
VVAERQLMTDFMAESQGR*
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mRNA from alignment at P-wetherbeei_contig14149:36..242-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14149.1.1 ID=mRNA_P-wetherbeei_contig14149.1.1|Name=mRNA_P-wetherbeei_contig14149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig14149:36..242- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGCAGGGCCAATCGTGACGACGAGGTCACGCTGCAGATCATCGA
GGGCATCGAGGATGCCGACGATCCCAGACTGGCATGGGGCGCGGTCAAGC
GCCGGATCGAAACACTGCGGGCGGCAGGCCACGAAGTGCCCGAGGCGCTC
GTGGTGGCAGAGCGCCAGCTCATGACCGACTTCATGGCCGAGAGCCAGGG
CCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14149:36..242-

>mRNA_P-wetherbeei_contig14149.1.1 ID=mRNA_P-wetherbeei_contig14149.1.1|Name=mRNA_P-wetherbeei_contig14149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig14149:36..242- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGCAGGGCCAATCGTGACGACGAGGTCACGCTGCAGATCATCGA
GGGCATCGAGGATGCCGACGATCCCAGACTGGCATGGGGCGCGGTCAAGC
GCCGGATCGAAACACTGCGGGCGGCAGGCCACGAAGTGCCCGAGGCGCTC
GTGGTGGCAGAGCGCCAGCTCATGACCGACTTCATGGCCGAGAGCCAGGG
CCGCTGA
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