mRNA_P-wetherbeei_contig1034.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1034.4.1
Unique NamemRNA_P-wetherbeei_contig1034.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1034.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1034contigP-wetherbeei_contig1034:3800..8091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3742
Hectar predicted targeting categoryother localisation
Exons3
Cds size1428
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.4520707-UTR-P-wetherbeei_contig1034:3799..40311683185864.4520707-UTR-P-wetherbeei_contig1034:3799..4031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1034 3800..4031 +
1683185864.461221-UTR-P-wetherbeei_contig1034:4246..42781683185864.461221-UTR-P-wetherbeei_contig1034:4246..4278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1034 4247..4278 +
1683185864.4883308-UTR-P-wetherbeei_contig1034:6041..80911683185864.4883308-UTR-P-wetherbeei_contig1034:6041..8091Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1034 6042..8091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.4698718-CDS-P-wetherbeei_contig1034:4278..46431683185864.4698718-CDS-P-wetherbeei_contig1034:4278..4643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1034 4279..4643 +
1683185864.4788816-CDS-P-wetherbeei_contig1034:4978..60411683185864.4788816-CDS-P-wetherbeei_contig1034:4978..6041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1034 4979..6041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1034.4.1prot_P-wetherbeei_contig1034.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1034 4279..6041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1034.4.1

>prot_P-wetherbeei_contig1034.4.1 ID=prot_P-wetherbeei_contig1034.4.1|Name=mRNA_P-wetherbeei_contig1034.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=476bp
MIYSLGVVLLEEFDAVPLFPSAPNQGPPPPIDGELRRGIKTRAVGKLGDW
CRIEAEPNVSGWVDASCIAPHALPAFYEGSADLPFGTTLRVREQPHTDAD
TMGTVAAHSLIYAVERRGHWIRVCCSDADVSDDSGGQRLDGWMLTATADR
TLLVPCIPWLAAFGEDLPERAVLNVRAAPVDDAAVVDQLTVEHSRLLPAL
EATNADAAADGGGWMRICHPHHPFAWLKMHASGYTLVAPVVARPHRINPE
LLSGGVTATLNVRSAPAAGASAVGAVGLDDVVDVVDGRNGWHRVLFRACE
EAWVLAASGGVPLLVPCDEKHGGGPVFGDGGGSGGTGAGGTHAGGAGARV
DGVYSRAMGPLKLREEPDTSSIEAGTVAAGDAVRVLQSDGAWRLVAYGGR
EDFWVLSRNSRGPIGTEAYVSRQLNLRLCDGEAGKLLDRLVLLDDIQGAF
ALLRLSGAPRPIYNARAVPPSAAVP*
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mRNA from alignment at P-wetherbeei_contig1034:3800..8091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1034.4.1 ID=mRNA_P-wetherbeei_contig1034.4.1|Name=mRNA_P-wetherbeei_contig1034.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4292bp|location=Sequence derived from alignment at P-wetherbeei_contig1034:3800..8091+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCAAAAGCAGCAATAGCCGCAAACCTTCGCATCGTTTGGCAGAGTCT
TCGAGCCTGCGTTCGAGCTACAGAATGCAGGCAGCCGAATACGCCGTCCT
TGCTAGCTTTACAGTCCTCCTTTTGCTTTCTCTTCCCCTCGAATCCCGCA
TTAAAAATAGTTTGGGCGTCACCAACAAGAAAAATAAAAGAAGCTTTCTC
CCTTCTTAACGTCCACTTTTCGTTGCAAAGTGGTGAGTGCATCTATTGCT
GCAAAGCTGCTGCCTGTCGTGTCCTCCTTCTTTCTGAAACAGCACTCGCA
AAGGAAAAGCAAACGGCAAAAAATTGAAGAAGAGGTTTGCAGTTTGCAGT
CCTTATGAATTAAGGAGAGCTTCACGCTTTGCAACGACGTTTTATTCCTC
GACAACAGACCCATTCCCAGCGCCGTTTCACGCAATTCTCTCTTCAGCGC
ACTTCGGATGCGTTTCGAGCTCAAGAGACATGATTTACTCGCTCGGCGTC
GTGCTTCTCGAGGAGTTTGATGCCGTTCCGCTCTTCCCGTCGGCCCCGAA
CCAAGGTCCTCCGCCGCCGATCGACGGCGAGCTGCGTCGAGGCATCAAAA
CGCGCGCAGTCGGGAAGCTCGGAGACTGGTGCCGCATTGAGGCGGAGCCG
AACGTGTCGGGATGGGTCGATGCGTCGTGTATCGCGCCGCATGCTCTGCC
CGCCTTCTACGAGGGCTCGGCCGACCTGCCGTTTGGGACGACGTTGCGGG
TACGGGAGCAGCCCCACACCGACGCTGACACGATGGGCACGGTGGCGGCG
CACAGTTTGATCTACGCGGTGGAGCGGCGCGGACACTGGATAAGGTGCGC
TACATGCATGTGAACGGCGCCTTTTCCTCGGCTTTATCTTCACTCTGGAG
ACATTTGTGAGCTTCGGTTTCAAACTTCAACTGTTGAGCCCTACATAGGC
TCCCTTTCGCTTTCATTTTCTGGTTCTTTCTTCCTGTGACAACGTTGCTG
TGGCAACTCGCCTCTGCGCGTCTCCCAAACTTGAACTGTTGCATTAGACT
TCTAGATTAACACATCCCCTTAATGAAGTTTCATTTCGGATGAAGCCTCA
CCTGAAGTCCCAGAACTCACGCACAGCGTTTACGCCAGCTATCCGTCTTC
TCCTCGCCCCTTCCCTGCTGAACAAGCAGGGTATGCTGCTCCGATGCTGA
CGTTTCTGACGACAGCGGCGGCCAGCGACTGGACGGCTGGATGCTGACGG
CGACCGCGGACCGCACGCTGCTTGTGCCATGCATCCCATGGCTCGCTGCC
TTCGGCGAAGACCTTCCAGAGCGCGCCGTGCTCAACGTCCGCGCCGCCCC
TGTGGACGACGCCGCCGTCGTCGACCAGCTGACCGTCGAGCACAGCCGCT
TGCTGCCGGCCCTGGAAGCGACCAACGCCGACGCCGCCGCTGACGGCGGC
GGCTGGATGCGCATCTGCCATCCACACCACCCGTTCGCCTGGTTGAAGAT
GCACGCCTCGGGCTACACGCTCGTTGCGCCGGTGGTGGCGCGCCCGCATC
GCATCAATCCGGAGCTGCTGAGCGGCGGCGTCACAGCGACGCTCAACGTG
CGCTCCGCTCCGGCGGCGGGCGCCTCGGCGGTGGGCGCGGTGGGGCTCGA
TGACGTGGTTGACGTGGTGGACGGGCGCAACGGCTGGCACCGCGTTCTCT
TTCGCGCGTGCGAGGAGGCGTGGGTCCTCGCAGCAAGCGGCGGCGTCCCG
CTTCTCGTGCCCTGCGACGAGAAGCACGGGGGCGGGCCGGTTTTCGGTGA
TGGTGGCGGCAGCGGTGGCACTGGTGCAGGTGGCACTCACGCAGGCGGCG
CCGGCGCTCGAGTTGACGGCGTCTACTCCCGCGCGATGGGCCCGCTGAAG
CTGCGGGAGGAACCGGACACTTCGTCAATCGAGGCAGGTACAGTGGCTGC
CGGCGACGCCGTGCGCGTGCTGCAGTCCGACGGTGCGTGGCGGCTCGTCG
CGTACGGCGGCCGCGAGGACTTCTGGGTGCTGTCGCGCAATTCGCGGGGC
CCGATCGGCACAGAGGCGTATGTCAGCCGCCAGCTCAACCTGCGCCTCTG
CGATGGCGAGGCTGGCAAGCTGCTGGATCGTCTTGTGCTGCTTGACGACA
TCCAAGGTGCGTTCGCGTTGCTGCGCCTTTCGGGTGCCCCGCGCCCGATT
TACAACGCCCGCGCCGTCCCGCCGTCGGCAGCCGTGCCTTAGTTTGAGCG
TTTTGACGCCTTGACGGCGTGGGTGCTTGCGACCTTGATGTGGCGCAATG
ACCCCCTTCACAGCGACATCAAGGTCCCATCCTTCGCCGATTTTGCGTCC
AATCCTGACCTGGCCCGTCTCCCGTTCACGCCCGCGCAACTGGCGCACGC
CTGTCTTCCAGCCCGTCTCTGTGGTCTGGTGTCATGTCTGCTTCGGCAAT
CAGTTCAGCCGCATTTGTTGCTTCCATGGCGGGTGCCATTCCGAAGATTC
TAGCCCGCCTTCCGCCCCCGCAAGCGGAGGCCTTGCGCGAGGCGCTCCCG
CTCCTGCCCACCATGGAGCACGTCCTCTCGAGCGTCCGCCACCTCCTTGA
CCAAGAGGGCGTGGACGCGGACGTGCTGAAGCGGGCCATCCCGCCGTCGT
GGGGTCGGCCTCGCCAGCGGCGAGGATGCAACGCGGGGGCAGTCGCTAGC
GGATCGCTGCGCTGCGCGCGTCTACAGCGGCAGGCACGGCGTGCAGGCAA
AGCTCATGTCGGCGATCAATAGCAAGCGGCGTCATCGCCTGATCGCCGTT
TTTGGCCCCGATGCCGCGCAGCCGCGATCGAGCCAACAACAGCGATTACG
CGAGGTCGCCCGCCTTAACAGCCAGTCCGCCGTCGGTGCCTCCGCCTAGC
TCAGTGCCCAGCTGGACCCGAATGAGGTGCTCGTTCGCGGCTTTGTGACC
CCAGCAACTGCGACGAAGTGGTGACGCGCAAGTCGTTCCGCACCCTCGGA
GAAGGTGCGTTGCTAAACGACGAGGTGTTGGATTTTCTGTCAAACAGCTC
AACTTGACTCGCGGTGGCCGCAGCGGCGGCGGCGGCAGCGGCGGTGGGGC
GCGCGATGCTGGCGACGGCACCAGCGGGAATGGCGGCGCCGGCGACGGCA
GCAGTGGCGGCAGCACAGCCAGTGCCTCTGCCGCCGGCGCCGGCGCGGCT
CATGGCAGGATTGTTTCCGGTAGAGGCGGCGGTGGCGGCGGCGACAGCAG
CATGGCTGGTGGCGCCGCTGCCGGCACTGGCGCGGCCCCCGGCGCTGTCG
ACATTCAAGCGGCCGCCTGCACGTGGGCAAGTCCTTCTTCTACACGCAGT
CGGCCGCTCTCGTCGAGGCCTGTCCCATCGGCAACGGTGGCTTCCGCCGC
CTCATCTCGAAGGCCGGCATCACGGACATCTTCGCTATCAACAAGCTCTG
CATGCCCATCAACTTCGGCCGGAACCACTGGTTGCTGGGCATCATCGACA
TGGCTGGAAAACGCTTCATCATCTACGACTCGATGTTGCAAACGTAGTGC
GACGCTTACAGCGCCGCGTTCGACAATCTTGCCCGCATAGTTGAGCATGA
AGTCGCCGCCACGCTGCCCGCAGCGGCCGCCTTCAGCACTGCAGCGTGGG
AGCGGTCTCACCAGGGCTGGATGTCCCACAACAGGATGGCATGGTCGACT
GCGGCATTTTTACCCTGATGTTCGCTCGGTGCTTGAGCCGCGAGGAGGCC
CTTTCTTTTTCGATGGCAGATGTACAATTTCTGCCCCGGCGTTTTCTGCT
GGACATTCTCCTCGGCGACCGGGGGATCCTCGCCAGTTCCCGCGCAACAT
GGGGGATCGCAGACCTGCCGTCCGCGCGGCTTGCGCCGTCAATTGGCGAT
GGCAACAGCGGCGGCGGCGGTGGTAGCAGCGGTGGGAGCAGTAACAGCGA
TAGCGGATGCAAAGGCAGCGGCAACAGAGGCGGCACCAGTGGCAGCGGTG
GTGGCGGTGGTAGCGGCGACAGCAGCGGCTGCGGAAGTAGCGGCGGCTGC
GGCGGCGGCGGCAGCAGCGGGAGCGATAGCAGTGGCGCTTGTGACGGCGG
CGTTGATTGCAGCGGCAGACCTGCTGCTCTGCTGCCGCCGCTGTTACCGA
AAACGCCGCCGCAGGCGACCACGGAAGAGACCGCTTCATGATCCAGGGGA
CAACCCCGGCGGCGGCAGCAAAAAGCGCCGTCGTACCGACACGGACGGCG
CAACGGTCCCAGGGGCGGAGGCAGGAAACAGCTCTACGGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1034:3800..8091+

>mRNA_P-wetherbeei_contig1034.4.1 ID=mRNA_P-wetherbeei_contig1034.4.1|Name=mRNA_P-wetherbeei_contig1034.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1428bp|location=Sequence derived from alignment at P-wetherbeei_contig1034:3800..8091+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTACTCGCTCGGCGTCGTGCTTCTCGAGGAGTTTGATGCCGTTCC
GCTCTTCCCGTCGGCCCCGAACCAAGGTCCTCCGCCGCCGATCGACGGCG
AGCTGCGTCGAGGCATCAAAACGCGCGCAGTCGGGAAGCTCGGAGACTGG
TGCCGCATTGAGGCGGAGCCGAACGTGTCGGGATGGGTCGATGCGTCGTG
TATCGCGCCGCATGCTCTGCCCGCCTTCTACGAGGGCTCGGCCGACCTGC
CGTTTGGGACGACGTTGCGGGTACGGGAGCAGCCCCACACCGACGCTGAC
ACGATGGGCACGGTGGCGGCGCACAGTTTGATCTACGCGGTGGAGCGGCG
CGGACACTGGATAAGGGTATGCTGCTCCGATGCTGACGTTTCTGACGACA
GCGGCGGCCAGCGACTGGACGGCTGGATGCTGACGGCGACCGCGGACCGC
ACGCTGCTTGTGCCATGCATCCCATGGCTCGCTGCCTTCGGCGAAGACCT
TCCAGAGCGCGCCGTGCTCAACGTCCGCGCCGCCCCTGTGGACGACGCCG
CCGTCGTCGACCAGCTGACCGTCGAGCACAGCCGCTTGCTGCCGGCCCTG
GAAGCGACCAACGCCGACGCCGCCGCTGACGGCGGCGGCTGGATGCGCAT
CTGCCATCCACACCACCCGTTCGCCTGGTTGAAGATGCACGCCTCGGGCT
ACACGCTCGTTGCGCCGGTGGTGGCGCGCCCGCATCGCATCAATCCGGAG
CTGCTGAGCGGCGGCGTCACAGCGACGCTCAACGTGCGCTCCGCTCCGGC
GGCGGGCGCCTCGGCGGTGGGCGCGGTGGGGCTCGATGACGTGGTTGACG
TGGTGGACGGGCGCAACGGCTGGCACCGCGTTCTCTTTCGCGCGTGCGAG
GAGGCGTGGGTCCTCGCAGCAAGCGGCGGCGTCCCGCTTCTCGTGCCCTG
CGACGAGAAGCACGGGGGCGGGCCGGTTTTCGGTGATGGTGGCGGCAGCG
GTGGCACTGGTGCAGGTGGCACTCACGCAGGCGGCGCCGGCGCTCGAGTT
GACGGCGTCTACTCCCGCGCGATGGGCCCGCTGAAGCTGCGGGAGGAACC
GGACACTTCGTCAATCGAGGCAGGTACAGTGGCTGCCGGCGACGCCGTGC
GCGTGCTGCAGTCCGACGGTGCGTGGCGGCTCGTCGCGTACGGCGGCCGC
GAGGACTTCTGGGTGCTGTCGCGCAATTCGCGGGGCCCGATCGGCACAGA
GGCGTATGTCAGCCGCCAGCTCAACCTGCGCCTCTGCGATGGCGAGGCTG
GCAAGCTGCTGGATCGTCTTGTGCTGCTTGACGACATCCAAGGTGCGTTC
GCGTTGCTGCGCCTTTCGGGTGCCCCGCGCCCGATTTACAACGCCCGCGC
CGTCCCGCCGTCGGCAGCCGTGCCTTAG
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