mRNA_P-wetherbeei_contig1410.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1410.3.1
Unique NamemRNA_P-wetherbeei_contig1410.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1410.3.1 vs. uniprot
Match: A0A836CMD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.260e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:  196 RCGACFVGHCKRHPLQDHGDRAKSLKARLGDPQKLLESIYAKTVQTQLDKFAALERDANAAAEQRXXXXXXXXXXXKAERKGNKLSERQTARAKELRLGGHLVNMML-SDDED 531
            +CGACFVG CKRHPLQDHG R K L A+L    + L+ +Y   ++ Q+DKF   E   NA ++Q+           +AER+GNKL+  Q  +AK+LRLGGHLVN+M+ S DE+
Sbjct:    3 QCGACFVGQCKRHPLQDHGKRTKDLMAKLPSKSETLKRVYETLLKKQVDKF---EAQTNAVSDQQAYKEKQGKERDRAERRGNKLTREQQEKAKKLRLGGHLVNLMIDSSDEE 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1410.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMD5_9STRA9.260e-2248.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1410contigP-wetherbeei_contig1410:3212..4933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNA4
Model size1703
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.14e-20
EggNOG OGs2CDWX@1|root,2S5HT@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004580.1
Cds size1419
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.027511-UTR-P-wetherbeei_contig1410:3211..33881683186009.027511-UTR-P-wetherbeei_contig1410:3211..3388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1410 3212..3388 +
1683186009.0501459-UTR-P-wetherbeei_contig1410:4826..49331683186009.0501459-UTR-P-wetherbeei_contig1410:4826..4933Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1410 4827..4933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.0356102-CDS-P-wetherbeei_contig1410:3388..43551683186009.0356102-CDS-P-wetherbeei_contig1410:3388..4355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1410 3389..4355 +
1683186009.0429175-CDS-P-wetherbeei_contig1410:4374..48261683186009.0429175-CDS-P-wetherbeei_contig1410:4374..4826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1410 4375..4826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1410.3.1prot_P-wetherbeei_contig1410.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1410 3389..4826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1410.3.1

>prot_P-wetherbeei_contig1410.3.1 ID=prot_P-wetherbeei_contig1410.3.1|Name=mRNA_P-wetherbeei_contig1410.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=473bp
MAGPGPRCGACFVGHCKRHPLQDHGDRAKSLKARLGDPQKLLESIYAKTV
QTQLDKFAALERDANAAAEQRQYQSQQEREREKAERKGNKLSERQTARAK
ELRLGGHLVNMMLSDDEDGDSSDDGGRRGSGRRAERREERHRSNSGKDRK
KEKKRRREKEKDKERDRDKKRRKRERDEKRKKRSRKEKRRRKSSDGDGSE
NDLGNGMESSGTSSSSGSSDGSARSARRGEHGDGIGGGERSGSEDRRRTA
NRRSRSGSDDGRKRERIEKRRKKEKKRAKGERSKSKRRRSDDSESDEDDD
DRRRIRRDRRSGGRGDRCSGGGAATAKVAAAAAAAAAVAAAAATTIVNTR
TAMAAKRTAAAAATAATPAVLTAAALAVPAAAATAGRKRTRTAVPAATMG
ATAATMPAAPLPPAPSKRQRWRRLLQLTRGTEAETLRNEAVRAGVRWLLL
LAGEPKPPKPPKPPGAGNGERR*
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mRNA from alignment at P-wetherbeei_contig1410:3212..4933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1410.3.1 ID=mRNA_P-wetherbeei_contig1410.3.1|Name=mRNA_P-wetherbeei_contig1410.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1722bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:3212..4933+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAGAAGTGAAGAAAATAAGAAAATAAAAGCTTAGCTCACGAAGAGCTG
TCGAAGGGACCGTATAGGTACCATCGAGGGTTATAATTATTTCGTGTGGC
GGAAGGGGGAAGACGGCAAGGACCGTTTGTAACGAGATCGGCAAGACTGC
GTCCCTCCCTCCAACGCCTAGGAGACCATGGCCGGGCCGGGACCGCGATG
CGGGGCCTGCTTCGTGGGTCACTGCAAGCGCCATCCTCTGCAAGACCATG
GTGACCGCGCCAAGTCGCTCAAGGCGAGACTGGGAGATCCGCAAAAGCTA
CTCGAAAGCATTTACGCAAAGACGGTCCAGACTCAGCTGGATAAGTTTGC
CGCTCTGGAGCGCGACGCCAATGCAGCTGCCGAGCAGCGCCAATATCAAA
GCCAGCAAGAGCGCGAGCGCGAGAAGGCCGAGCGAAAAGGCAACAAGCTA
TCCGAACGACAGACGGCGCGGGCGAAAGAACTGCGTCTTGGAGGGCATTT
GGTCAACATGATGCTCTCGGACGATGAAGACGGCGACAGCAGCGATGATG
GCGGCCGCCGTGGCAGCGGACGCCGGGCAGAGCGGCGGGAGGAGCGGCAC
CGTAGCAATTCAGGCAAAGACCGGAAGAAGGAGAAGAAGCGGCGGCGGGA
GAAGGAAAAGGACAAGGAGAGAGACCGCGACAAAAAGCGGCGCAAGAGGG
AAAGGGACGAGAAGCGGAAGAAGCGGAGTCGGAAGGAGAAGCGCCGACGC
AAGAGCAGCGACGGCGACGGCAGCGAAAACGATCTAGGCAACGGCATGGA
GAGCAGCGGAACCAGCAGCAGCAGCGGCAGCAGCGACGGCAGCGCTCGTA
GTGCTCGCCGCGGTGAACATGGCGACGGCATCGGTGGCGGCGAGCGCAGC
GGGAGCGAGGATAGGCGAAGAACTGCGAACCGCCGGAGTCGTTCGGGGTC
TGACGATGGGCGCAAGCGCGAGCGGATAGAGAAGCGCCGGAAGAAGGAAA
AGAAGCGGGCGAAAGGAGAGCGCAGCAAGTCGAAGCGTCGCCGCAGCGAC
GATTCGGAGAGTGACGAGGACGACGATGACCGCCGCCGCATACGCCGTGA
TCGCCGCAGCGGCGGGCGTGGCGATCGTTGCAGTGGCGGCGGCGGCGACG
GCGGTGGCTGCAGCAGCGACGGCGAAGGTGGCGGCGGCAGCGGCGGCGGC
AGCAGCGGTGGCGGCGGCGGCGGCGACGACAATCGTAAACACGCGAACGG
CGATGGCGGCAAAGCGAACGGCAGCGGCGGCGGCAACAGCCGCCACGCCG
GCAGTGCTAACGGCCGCGGCGCTCGCAGTGCCAGCGGCAGCAGCAACGGC
GGGGAGGAAGAGGACACGGACTGCAGTCCCGGCAGCGACGATGGGGGCAA
CGGCGGCGACGATGCCGGCGGCGCCACTGCCTCCGGCGCCCTCGAAAAGG
CAGAGGTGGCGGAGGCTGTTGCAGCTGACTCGGGGGACGGAGGCGGAGAC
GCTGAGGAATGAAGCCGTTCGTGCTGGCGTCCGTTGGTTGCTTTTGCTAG
CCGGCGAGCCGAAGCCGCCGAAGCCGCCGAAGCCGCCGGGAGCGGGAAAT
GGGGAGCGCCGGTAGGTAAATTTCTGGATTCATGGATGCAGAAGCAAATG
GCCGATGCGCGTCTGACGGAGGCGCCTCCGCTGTTCCCAATATAGATTAA
AACTTGCCCATATTCGACCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1410:3212..4933+

>mRNA_P-wetherbeei_contig1410.3.1 ID=mRNA_P-wetherbeei_contig1410.3.1|Name=mRNA_P-wetherbeei_contig1410.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:3212..4933+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGCCGGGACCGCGATGCGGGGCCTGCTTCGTGGGTCACTGCAA
GCGCCATCCTCTGCAAGACCATGGTGACCGCGCCAAGTCGCTCAAGGCGA
GACTGGGAGATCCGCAAAAGCTACTCGAAAGCATTTACGCAAAGACGGTC
CAGACTCAGCTGGATAAGTTTGCCGCTCTGGAGCGCGACGCCAATGCAGC
TGCCGAGCAGCGCCAATATCAAAGCCAGCAAGAGCGCGAGCGCGAGAAGG
CCGAGCGAAAAGGCAACAAGCTATCCGAACGACAGACGGCGCGGGCGAAA
GAACTGCGTCTTGGAGGGCATTTGGTCAACATGATGCTCTCGGACGATGA
AGACGGCGACAGCAGCGATGATGGCGGCCGCCGTGGCAGCGGACGCCGGG
CAGAGCGGCGGGAGGAGCGGCACCGTAGCAATTCAGGCAAAGACCGGAAG
AAGGAGAAGAAGCGGCGGCGGGAGAAGGAAAAGGACAAGGAGAGAGACCG
CGACAAAAAGCGGCGCAAGAGGGAAAGGGACGAGAAGCGGAAGAAGCGGA
GTCGGAAGGAGAAGCGCCGACGCAAGAGCAGCGACGGCGACGGCAGCGAA
AACGATCTAGGCAACGGCATGGAGAGCAGCGGAACCAGCAGCAGCAGCGG
CAGCAGCGACGGCAGCGCTCGTAGTGCTCGCCGCGGTGAACATGGCGACG
GCATCGGTGGCGGCGAGCGCAGCGGGAGCGAGGATAGGCGAAGAACTGCG
AACCGCCGGAGTCGTTCGGGGTCTGACGATGGGCGCAAGCGCGAGCGGAT
AGAGAAGCGCCGGAAGAAGGAAAAGAAGCGGGCGAAAGGAGAGCGCAGCA
AGTCGAAGCGTCGCCGCAGCGACGATTCGGAGAGTGACGAGGACGACGAT
GACCGCCGCCGCATACGCCGTGATCGCCGCAGCGGCGGGCGTGGCGATCG
TTGCAGTGGCGGCGGCGCAGCGACGGCGAAGGTGGCGGCGGCAGCGGCGG
CGGCAGCAGCGGTGGCGGCGGCGGCGGCGACGACAATCGTAAACACGCGA
ACGGCGATGGCGGCAAAGCGAACGGCAGCGGCGGCGGCAACAGCCGCCAC
GCCGGCAGTGCTAACGGCCGCGGCGCTCGCAGTGCCAGCGGCAGCAGCAA
CGGCGGGGAGGAAGAGGACACGGACTGCAGTCCCGGCAGCGACGATGGGG
GCAACGGCGGCGACGATGCCGGCGGCGCCACTGCCTCCGGCGCCCTCGAA
AAGGCAGAGGTGGCGGAGGCTGTTGCAGCTGACTCGGGGGACGGAGGCGG
AGACGCTGAGGAATGAAGCCGTTCGTGCTGGCGTCCGTTGGTTGCTTTTG
CTAGCCGGCGAGCCGAAGCCGCCGAAGCCGCCGAAGCCGCCGGGAGCGGG
AAATGGGGAGCGCCGGTAG
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