mRNA_P-wetherbeei_contig141.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig141.2.1
Unique NamemRNA_P-wetherbeei_contig141.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig141.2.1 vs. uniprot
Match: A0A6H5JDC8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.840e-9
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 3 
Query:  378 RPAITVYEGPPDPSYQEAC-RIEVPYASFLLIYAGKAKARDILQLIREHTLKVVGWSSMMLFARSFEYRKDTWDRFYEAKA 617
            RP + V  G P     EA  R+ VPY  FLL+Y+GKA A+DI++L     +++ G+++ M F  SF+Y  DTW  +Y+ KA
Sbjct:   72 RPRVLVTRGGPPVGAGEAKGRVRVPYKHFLLMYSGKATAKDIVRLAMRGNVELTGFAAFMQFGLSFDYSSDTWQGYYDIKA 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig141.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDC8_9PHAE8.840e-941.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig141contigP-wetherbeei_contig141:4407..6021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1615
Hectar predicted targeting categoryother localisation
Exons1
Cds size1341
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.6857777-UTR-P-wetherbeei_contig141:4406..46091683186008.6857777-UTR-P-wetherbeei_contig141:4406..4609Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig141 4407..4609 +
1683186008.7088923-UTR-P-wetherbeei_contig141:5950..60211683186008.7088923-UTR-P-wetherbeei_contig141:5950..6021Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig141 5951..6021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.6983469-CDS-P-wetherbeei_contig141:4609..59501683186008.6983469-CDS-P-wetherbeei_contig141:4609..5950Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig141 4610..5950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig141.2.1prot_P-wetherbeei_contig141.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig141 4610..5950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig141.2.1

>prot_P-wetherbeei_contig141.2.1 ID=prot_P-wetherbeei_contig141.2.1|Name=mRNA_P-wetherbeei_contig141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=447bp
MRFSVLHPLRPFNFLQPHAKFRGQTMHLVFGAEHHTGDEHAADLEVTISF
RDAPDGDPRPAITVYEGPPDPSYQEACRIEVPYASFLLIYAGKAKARDIL
QLIREHTLKVVGWSSMMLFARSFEYRKDTWDRFYEAKARGEGVALPFIDA
GGRKVLCTSAAFRRAEDPVREERDDGAAGDAAAAKTAVAALTAAATAGGG
LATSTTGTIATWDANAYCLLCGHGTSLCRPPSSPPSPMSPSELSGRSGTM
DCVRSSLLVALEGLPHAPRGLLHVPAKSLLQLSPSWLHPWTATAARCFHG
LLRPRSTAPCASPGHFPFIVTLRDPSVKTAAGAAAVAAGAAATAAATAAA
MVAAAAAAARRVTTTATVTARQSASWNVPQEQGWTEACCNFGDWHFMGAA
LRDEWHGAALSAAFESGGPGPHHIPALSDLGAVIRLRHGLTTYASF*
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mRNA from alignment at P-wetherbeei_contig141:4407..6021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig141.2.1 ID=mRNA_P-wetherbeei_contig141.2.1|Name=mRNA_P-wetherbeei_contig141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1615bp|location=Sequence derived from alignment at P-wetherbeei_contig141:4407..6021+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAAGCTATACCGCAGGTACTCTGGCGCAGAAGAAGGACCATTCTCTTA
TCCTCGACCTCATGGGGTACTTCTGCTTCGCAGTGAAGGTGGGGGGTAGA
AAGTGAACACTCAGTCCAAGACAACTTGTCCCCTTTGCTCCCTTTTCGCA
GTTTTCTGCGCAATGGGGTGCATATTTGCGAACATGCTATAGGCCGCAAT
TTGATGCGTTTTTCTGTGCTTCACCCGCTTCGGCCGTTCAACTTTTTGCA
GCCCCATGCAAAGTTCCGTGGGCAAACCATGCACCTGGTATTTGGCGCCG
AGCACCACACGGGCGACGAGCACGCCGCCGACCTCGAGGTGACCATATCC
TTTCGCGACGCCCCGGATGGCGATCCGCGCCCTGCCATCACGGTGTACGA
GGGCCCGCCCGACCCATCCTATCAAGAGGCGTGCCGCATCGAGGTCCCTT
ACGCAAGCTTTCTGTTGATTTACGCGGGAAAGGCGAAGGCGCGCGACATC
CTGCAGCTGATCAGGGAGCACACATTGAAGGTCGTGGGCTGGTCCTCCAT
GATGTTGTTTGCCCGCAGCTTTGAGTACCGCAAGGACACCTGGGACCGCT
TCTACGAGGCCAAGGCGCGCGGCGAAGGCGTCGCCTTGCCGTTCATCGAC
GCCGGTGGTCGAAAGGTGCTTTGCACCAGCGCCGCATTTCGCCGTGCTGA
GGATCCCGTAAGGGAAGAAAGGGACGATGGCGCAGCCGGCGATGCCGCTG
CTGCCAAAACGGCCGTGGCGGCGCTTACAGCGGCTGCGACGGCCGGCGGC
GGATTGGCGACCTCGACGACCGGGACGATTGCCACGTGGGACGCAAATGC
TTATTGCCTCCTGTGTGGACACGGCACCTCGCTTTGCAGACCGCCGTCGT
CACCGCCGTCACCGATGTCACCGTCAGAGTTGTCTGGACGGAGCGGCACA
ATGGACTGCGTAAGGTCGTCGCTGTTGGTAGCGCTGGAGGGCTTGCCACA
CGCGCCGCGTGGTTTGCTGCATGTGCCGGCGAAGTCACTACTGCAGCTTT
CTCCATCTTGGCTCCATCCATGGACGGCTACGGCTGCCAGATGCTTCCAT
GGGTTGCTCCGCCCACGGTCAACTGCACCCTGTGCCTCACCGGGTCACTT
TCCCTTCATCGTCACACTTCGAGATCCGTCAGTGAAAACAGCAGCGGGAG
CGGCGGCGGTAGCAGCGGGGGCGGCAGCGACGGCGGCGGCGACGGCTGCA
GCGATGGTAGCGGCGGCGGCGGCGGCGGCAAGGAGAGTGACAACGACGGC
GACGGTGACAGCGCGACAGAGTGCATCATGGAATGTCCCGCAGGAGCAGG
GTTGGACAGAGGCGTGCTGCAACTTCGGTGATTGGCATTTCATGGGCGCA
GCGCTACGCGACGAGTGGCATGGAGCCGCATTGTCGGCGGCGTTTGAATC
CGGTGGTCCAGGCCCGCACCACATCCCGGCGCTGTCGGATCTCGGAGCGG
TTATCCGATTGCGCCACGGCCTTACCACTTACGCTTCTTTTTGAACATTC
TTTAAACAGTAATTAGACTGGAGGCGCGCAGATGGCTCTTTAACAAATCC
ATTACTGTTTACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig141:4407..6021+

>mRNA_P-wetherbeei_contig141.2.1 ID=mRNA_P-wetherbeei_contig141.2.1|Name=mRNA_P-wetherbeei_contig141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig141:4407..6021+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTTTTCTGTGCTTCACCCGCTTCGGCCGTTCAACTTTTTGCAGCC
CCATGCAAAGTTCCGTGGGCAAACCATGCACCTGGTATTTGGCGCCGAGC
ACCACACGGGCGACGAGCACGCCGCCGACCTCGAGGTGACCATATCCTTT
CGCGACGCCCCGGATGGCGATCCGCGCCCTGCCATCACGGTGTACGAGGG
CCCGCCCGACCCATCCTATCAAGAGGCGTGCCGCATCGAGGTCCCTTACG
CAAGCTTTCTGTTGATTTACGCGGGAAAGGCGAAGGCGCGCGACATCCTG
CAGCTGATCAGGGAGCACACATTGAAGGTCGTGGGCTGGTCCTCCATGAT
GTTGTTTGCCCGCAGCTTTGAGTACCGCAAGGACACCTGGGACCGCTTCT
ACGAGGCCAAGGCGCGCGGCGAAGGCGTCGCCTTGCCGTTCATCGACGCC
GGTGGTCGAAAGGTGCTTTGCACCAGCGCCGCATTTCGCCGTGCTGAGGA
TCCCGTAAGGGAAGAAAGGGACGATGGCGCAGCCGGCGATGCCGCTGCTG
CCAAAACGGCCGTGGCGGCGCTTACAGCGGCTGCGACGGCCGGCGGCGGA
TTGGCGACCTCGACGACCGGGACGATTGCCACGTGGGACGCAAATGCTTA
TTGCCTCCTGTGTGGACACGGCACCTCGCTTTGCAGACCGCCGTCGTCAC
CGCCGTCACCGATGTCACCGTCAGAGTTGTCTGGACGGAGCGGCACAATG
GACTGCGTAAGGTCGTCGCTGTTGGTAGCGCTGGAGGGCTTGCCACACGC
GCCGCGTGGTTTGCTGCATGTGCCGGCGAAGTCACTACTGCAGCTTTCTC
CATCTTGGCTCCATCCATGGACGGCTACGGCTGCCAGATGCTTCCATGGG
TTGCTCCGCCCACGGTCAACTGCACCCTGTGCCTCACCGGGTCACTTTCC
CTTCATCGTCACACTTCGAGATCCGTCAGTGAAAACAGCAGCGGGAGCGG
CGGCGGTAGCAGCGGGGGCGGCAGCGACGGCGGCGGCGACGGCTGCAGCG
ATGGTAGCGGCGGCGGCGGCGGCGGCAAGGAGAGTGACAACGACGGCGAC
GGTGACAGCGCGACAGAGTGCATCATGGAATGTCCCGCAGGAGCAGGGTT
GGACAGAGGCGTGCTGCAACTTCGGTGATTGGCATTTCATGGGCGCAGCG
CTACGCGACGAGTGGCATGGAGCCGCATTGTCGGCGGCGTTTGAATCCGG
TGGTCCAGGCCCGCACCACATCCCGGCGCTGTCGGATCTCGGAGCGGTTA
TCCGATTGCGCCACGGCCTTACCACTTACGCTTCTTTTTGA
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