mRNA_P-wetherbeei_contig14090.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14090.1.1
Unique NamemRNA_P-wetherbeei_contig14090.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14090.1.1 vs. uniprot
Match: A0A836CAA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.420e-23
Identity = 60/140 (42.86%), Postives = 86/140 (61.43%), Query Frame = 1 
Query:   19 EVPPELDGKVLSVMDPVSQKTLDCYAERVAKIGKEKFLVCYPKDDAVAIAMSEEGDISPISVDDPLMDVIFPIIEEHLK--GGDLTLMQGVAGEGVNG--EYDEEEEGDXXXXXXEYDGD-EDVELITEFDVNDETFLLV 423
            E+P E   +V    DP +   +DCYAE  A+I   +++V +P DDAVAIAM ++GDI P+ VDD LMD +FP++++ L+  G +L L +      ++G   YD+E+  D        D D EDVELI+E D+N E FLLV
Sbjct:   59 EIPEERLSEVFRFFDPETSTVIDCYAENFAEIDGARYVVGFPVDDAVAIAMEQDGDIMPVPVDDELMDTLFPVLQKDLEEAGAELVLKRTPVTLTLSGLEAYDDEDREDLTGDDEGGDADNEDVELISELDINGEKFLLV 198
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BLAST of mRNA_P-wetherbeei_contig14090.1.1 vs. uniprot
Match: D8LN63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN63_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.070e-18
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    7 DSFEEVPPELDGKVLSVMDPVSQKTLDCYAERVAKIGKEKFLVCYPKDDAVAIAMSEEGDISPISVDDPLMDVIFPIIEEHLK--GGDLTLMQ 279
            DS EEV  EL  K +++  P + K L CYAER+A +G E++LV +PKD AVAIA  E G++SP+  DDP+MD +FP+ E  +   G  +TL++
Sbjct:    9 DSLEEVSDELASKPVALGCPKTGKELVCYAERIAVVGGERYLVAFPKDPAVAIAFDENGEVSPVPNDDPIMDELFPLAEACVADLGPGVTLLR 101
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BLAST of mRNA_P-wetherbeei_contig14090.1.1 vs. uniprot
Match: A0A7S2V6D6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.850e-9
Identity = 30/104 (28.85%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:   13 FEEVPPELDGKVLSVMDPVSQKTLDCYAERVAKIGKEKFLVCYPKDDAVAIAMSEE-GDISPISVDDPLMDVIFPIIEEHLKGGDLTLMQGVAGEGVNGEYDEE 321
             E++  +   +++ + +P +Q+ ++ Y    A +  +++++ YP D AVA+A   E GD+  + +D PLMD +FP +E+HL+  D+ L +      + GE+ +E
Sbjct:   60 IEDISEKKRNEIVILQEPETQRCIEAYINVKAFVDDQEYIIAYPCDWAVAMAAENEAGDLELVELDSPLMDELFPFLEQHLEQDDIHLFRTPVTLTLQGEFMDE 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CAA3_9STRA2.420e-2342.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LN63_ECTSI2.070e-1847.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V6D6_9STRA8.850e-928.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14090contigP-wetherbeei_contig14090:170..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN63
PFAMsDUF3727
Model size423
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.39e-19
EggNOG OGs2B3Q5@1|root,2SC6V@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF3727
Ec32 orthologEc-05_003660.1
DescriptionProtein of unknown function (DUF3727)
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.463461-CDS-P-wetherbeei_contig14090:169..3151683186008.463461-CDS-P-wetherbeei_contig14090:169..315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14090 170..315 -
1683186008.4723747-CDS-P-wetherbeei_contig14090:631..9081683186008.4723747-CDS-P-wetherbeei_contig14090:631..908Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14090 632..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14090.1.1prot_P-wetherbeei_contig14090.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14090 170..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14090.1.1

>prot_P-wetherbeei_contig14090.1.1 ID=prot_P-wetherbeei_contig14090.1.1|Name=mRNA_P-wetherbeei_contig14090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MVDSFEEVPPELDGKVLSVMDPVSQKTLDCYAERVAKIGKEKFLVCYPKD
DAVAIAMSEEGDISPISVDDPLMDVIFPIIEEHLKGGDLTLMQGVAGEGV
NGEYDEEEEGDDEEDEGEYDGDEDVELITEFDVNDETFLLV
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mRNA from alignment at P-wetherbeei_contig14090:170..908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14090.1.1 ID=mRNA_P-wetherbeei_contig14090.1.1|Name=mRNA_P-wetherbeei_contig14090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=739bp|location=Sequence derived from alignment at P-wetherbeei_contig14090:170..908- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGATTCGTTTGAGGAGGTGCCACCAGAGCTCGACGGCAAGGTGCT
TTCCGTGATGGACCCGGTGTCTCAAAAGACGCTAGACTGCTACGCCGAAC
GCGTCGCCAAGATTGGGAAGGAAAAGTTTCTTGTATGCTATCCCAAGGAC
GACGCTGTTGCCATCGCCATGAGCGAGGAGGGAGATATCTCGCCAATCTC
TGTTGACGACCCGCTTATGGATGTCATCTTCCCCATCATCGAAGAGCACT
TGAAAGGCGGTGACCTCACACTAATGCGTAAGTCGCTCTGGACGCAAACC
TCTTTCTGGTCACCCATCGTATCTGTCAAAGGTTCTTCCGCCCTGCTGCG
TGTTGGAGTGCTTTTTCGTAGCGATATGTTTTTATCCTCGTGCCCTCTTC
CGCAATGCTTCGTTTTGATCGCTTTCGCTTATACGCGATACCTTTATATG
CAGGCACTGCACGACCCTTTGACCAAACTCGAACCTCACGCGATCTCTTT
CAGGCACGCCCGTGATGCTGACGCTCCGCGGGCTCGACGACATTGAGGAG
GGCGACGCAGATGCCTTCGACGATGAGGAGGCGGGGGGCGTAGAGGGCGT
CGCCGGCGAGGGCGTCAATGGCGAATACGATGAGGAAGAAGAGGGGGACG
ACGAGGAGGATGAGGGGGAGTATGACGGTGACGAGGATGTGGAGCTCATT
ACGGAGTTCGACGTCAACGACGAGACCTTCCTGCTGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14090:170..908-

>mRNA_P-wetherbeei_contig14090.1.1 ID=mRNA_P-wetherbeei_contig14090.1.1|Name=mRNA_P-wetherbeei_contig14090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig14090:170..908- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGATTCGTTTGAGGAGGTGCCACCAGAGCTCGACGGCAAGGTGCT
TTCCGTGATGGACCCGGTGTCTCAAAAGACGCTAGACTGCTACGCCGAAC
GCGTCGCCAAGATTGGGAAGGAAAAGTTTCTTGTATGCTATCCCAAGGAC
GACGCTGTTGCCATCGCCATGAGCGAGGAGGGAGATATCTCGCCAATCTC
TGTTGACGACCCGCTTATGGATGTCATCTTCCCCATCATCGAAGAGCACT
TGAAAGGCGGTGACCTCACACTAATGCAGGGCGTCGCCGGCGAGGGCGTC
AATGGCGAATACGATGAGGAAGAAGAGGGGGACGACGAGGAGGATGAGGG
GGAGTATGACGGTGACGAGGATGTGGAGCTCATTACGGAGTTCGACGTCA
ACGACGAGACCTTCCTGCTGGTA
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