mRNA_P-wetherbeei_contig1408.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1408.1.1
Unique NamemRNA_P-wetherbeei_contig1408.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 6.830e-64
Identity = 121/241 (50.21%), Postives = 175/241 (72.61%), Query Frame = 1
Query:   10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIM--TYVSPGG-----GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
            II NT+ LA+D +P+ E+ +  +D  NLVFT  FALEMA+ L A+G R Y ++ FN+FDG++VLSSL++L +    +  GG     GGG+SALR+FR+LR+ KLAR W S++ +L  + +T+L IGNFA+LL LF++IY LIG++FFAN LHF    G  + I ++GY +A+VPR+NFD +L A TTVF+VL+ +NWN  ++   +AVG ++  YF+SL++ G  IVM+ FLAILLS+F +
Sbjct:  233 IILNTLTLALDHHPMDEEFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPDILTGGDGEDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHF-AEDGRVIGIGEEGYYDAEVPRSNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVFYFVSLIIVGMMIVMSLFLAILLSHFAT 472          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.290e-63
Identity = 121/241 (50.21%), Postives = 174/241 (72.20%), Query Frame = 1
Query:   10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIM--TYVSPGG-----GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
            II NT+ LA+D +P+ +  +  +D  NLVFT  FALEMA+ L A+G R Y ++ FN+FDG++VLSSL++L +    +  GG     GGG+SALR+FR+LR+ KLAR W S++ +L  + +T+L IGNFA+LL LF++IY LIG++FFAN LHF    G  + I ++GY +A VPR+NFD +L A TTVF+VL+ +NWN  ++   +AVG ++ +YF+SL+V G  IVM+ FLAILLS+F +
Sbjct:  619 IILNTLTLALDHHPMDDDFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPNILTGGEGEDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHF-AEDGRVIGIGEEGYYDAKVPRSNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVIYFVSLIVVGMMIVMSLFLAILLSHFAT 858          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A7S2PB29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB29_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.770e-63
Identity = 109/240 (45.42%), Postives = 161/240 (67.08%), Query Frame = 1
Query:    1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGG--GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
            M  I  NT++LA D Y I ++ +  ++  N+V T +F LEM ++LA +G R Y  N F++FD  IV++SL++L + + +      GG+SALR          A+ W+S+  +L  M  TVL++GNF +LL L +YIYAL+GM+FFAN +HFD  TG  + I + GYE AD+PR+NFD ++W+ TTVFQ+LT +NWN ++++  +A    A +YF+SL+VFG FIVMN FLAIL+ NF+  
Sbjct:  473 MVCIFINTIILACDHYGITDEFSAFLEIVNIVLTFIFFLEMCLSLAGLGMRMYLSNPFSIFDAFIVITSLVELGLVFSASDRKEAGGLSALRXXXXXXXXXXAKNWKSIHALLETMYETVLEVGNFTLLLLLMMYIYALVGMQFFANRMHFDSGTGAAIQIGESGYENADIPRSNFDSLVWSMTTVFQILTGENWNSVMYDGRRATSGAAVLYFLSLVVFGVFIVMNLFLAILIGNFQDN 712          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN)

HSP 1 Score: 214 bits (546), Expect = 2.950e-60
Identity = 114/243 (46.91%), Postives = 164/243 (67.49%), Query Frame = 1
Query:    1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMT---YVSPGGG---GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
            M  I ANT+VLA+D YP+P     +++  N   + VF LEM + L  +G + Y ++ FN+FD  IV   +++ + T   ++S       GGVSALR+FRL RVFKLAR W SL+ +L  + R V  IGNFA+LL++FIYIYALIG++FFAN L FD   G P++  D  + +  VPRNNFD +LWA  TVFQV++ +NWN ++++  +  G  A +YFISL++FG F++M+ FLA+LL NF++
Sbjct:  445 MVVITANTIVLALDHYPMPPALDNDLEIINFGLSCVFLLEMVLKLFGLGLKQYARDQFNIFDAFIVTMGVLETVATPPSFLSSSNTTKRGGVSALRSFRLFRVFKLARNWSSLRELLALIVRAVASIGNFAVLLSIFIYIYALIGLQFFANTLRFDK-DGYPINNKDPTFWQGTVPRNNFDSLLWAVQTVFQVISGENWNNIMYDGIRGNGFAASLYFISLVMFGDFVLMSLFLALLLDNFDT 686          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A8K1CR88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR88_PYTOL)

HSP 1 Score: 211 bits (538), Expect = 3.540e-59
Identity = 111/244 (45.49%), Postives = 160/244 (65.57%), Query Frame = 1
Query:    1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGGG------GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
            M  I+ANT +LA+D YP+P     +++  N   + VF LEM + L  +G R Y ++ FNVFD  +V++ L++ I T  S          G VSALR+FRL RVFKLAR WRSL+ +L+ + R V  I NF +LL LFIYIYALIG++ F N + FD   G  + +    + E ++PRNNFD +LW+  TVFQV+T +NWN ++++  ++ G I  +YF+SL++ G+FI+MN FLA+LL NF +E
Sbjct:  704 MLAIVANTTILALDHYPMPPGLDSDLEIVNFGLSCVFMLEMVLKLIGLGLRQYARDKFNVFDAFVVITGLLETIATPPSFMSSNVKKKKGAVSALRSFRLSRVFKLARNWRSLRELLQLIARAVASIANFGVLLFLFIYIYALIGLQIFGNTMRFDDE-GYAIPMDSPTFWEGELPRNNFDTLLWSMITVFQVITGENWNSIMYDVLRSNGMIGALYFVSLIILGNFILMNLFLALLLDNFSTE 946          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A5D6XXB3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.640e-58
Identity = 111/243 (45.68%), Postives = 159/243 (65.43%), Query Frame = 1
Query:    1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVS-----PGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
            M  I+ANTVVLA+D +P+P    E+++  N   + +F +EM + L  +G R Y ++  N+FD  IVLS +++LI T  S     P   G VSALRT R     KLAR W+S + +L  +   V  I NFA+L+ LFIYIYALIG++FFAN + +D + G P +  D  + E +VPRNNFD +LW+  TVFQV+T +NWN ++++  +  G  A VYFISL++FG+F++MN FLA+LL NF  +
Sbjct:  480 MGAILANTVVLALDHHPMPPTLDEDLEIINFGLSCIFIIEMVLKLFGLGLRQYARDRMNLFDAFIVLSGVLELITTPPSFLSDNPPKKGAVSALRTLRXXXXXKLARNWKSFRDLLAMISDAVASIANFAVLMFLFIYIYALIGIQFFANTMRYD-SNGFPTAKHDISFWEGEVPRNNFDTLLWSGVTVFQVITGENWNNIMYDTIRGNGMAACVYFISLVIFGNFVLMNLFLALLLDNFSID 721          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A812PGF5_9DINO (CACNA1I protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGF5_9DINO)

HSP 1 Score: 207 bits (526), Expect = 8.450e-58
Identity = 111/246 (45.12%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVG-WRAYWQNAFNVFDGVIVLSSLIDLIM---------TYVSPGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLS-ITDDGYEEA--DVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
            I+ NT +LA D YP+    +  ++ A  V T +F  EM V +A +G WR + +  FNVFD +IV++SL++L++         T      GGG+SALRT RL R+F LA++WRSL+ ++  M RT+  +  FA+LL LF++I++LIGM+FFAN L FDP TG+P       G   A  + PR +FD I WA   VFQVL+ +NWN ++++CW+AVG  A +YF++L+V G+F+++N FLAI+L NFE
Sbjct:  685 IVVNTCILAADHYPMDPDVSGALELAGFVLTLIFTAEMCVKVAGLGPWR-FIKAPFNVFDAIIVIASLVELVLAPPAFLTATTEDVASAGGGISALRTLRLFRLFALAKQWRSLRVLIDTMLRTLKDVAYFAVLLLLFLFIFSLIGMQFFANQLCFDPGTGLPSEEFQGSGSCPAPFERPRAHFDNIFWAFLAVFQVLSEENWNAIMYDCWRAVGWPATIYFVALVVVGNFVLLNLFLAIVLGNFE 929          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A6A3UMN1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UMN1_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.410e-57
Identity = 111/245 (45.31%), Postives = 166/245 (67.76%), Query Frame = 1
Query:    4 AFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGG--GGGVSA-------LRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPL-SITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
            A I+ NTV+L++D+YP+ E+ T  +D  N V T +F LE  V +  +G++ + ++ +N+FD ++V+  +++ I   VSP     G V A       LR+ R+ R+FKLAR W SLQ ++R +   V ++GNF++ L LF+Y+YAL+GM+ F N   FD + G+PL S   D   E  VPR NFD +LW+  TVFQVLT +NWN +LF+ W++ G++A +YFISL++FG+FIV+N FLAILLS+FE
Sbjct:  284 ALILLNTVLLSLDQYPVDEELTSIVDVINFVLTQIFLLEALVKVFGLGFQRWAEDRYNLFDALVVVLGIVEAI---VSPPQFLSGSVHAKSQSFAGLRSMRIFRLFKLARSWPSLQKLIRLIANAVSEVGNFSVFLLLFMYVYALLGMQIFGNRFRFD-SNGIPLTSPAADMDSEIYVPRANFDSLLWSGVTVFQVLTGENWNNVLFDGWRSTGSVALLYFISLVIFGNFIVLNLFLAILLSHFE 524          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A5A8D9W3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9W3_CAFRO)

HSP 1 Score: 207 bits (526), Expect = 1.480e-57
Identity = 111/246 (45.12%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVG-WRAYWQNAFNVFDGVIVLSSLIDLIM---------TYVSPGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLS-ITDDGYEEA--DVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
            I+ NT +LA D YP+    +  ++ A  V T +F  EM V +A +G WR + +  FNVFD +IV++SL++L++         T      GGG+SALRT RL R+F LA++WRSL+ ++  M RT+  +  FA+LL LF++I++LIGM+FFAN L FDP TG+P       G   A  + PR +FD I WA   VFQVL+ +NWN ++++CW+AVG  A +YF++L+V G+F+++N FLAI+L NFE
Sbjct: 1303 IVVNTCILAADHYPMDPDVSGALELAGFVLTLIFTAEMCVKVAGLGPWR-FIKAPFNVFDAIIVIASLVELVLAPPAFLTATTEDVASAGGGISALRTLRLFRLFALAKQWRSLRVLIDTMLRTLKDVAYFAVLLLLFLFIFSLIGMQFFANQLCFDPGTGLPSEEFQGSGSCPAPFERPRAHFDNIFWAFLAVFQVLSEENWNAIMYDCWRAVGWPATIYFVALVVVGNFVLLNLFLAIVLGNFE 1547          
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A833TFH4_PHYIN (Ion transport protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TFH4_PHYIN)

HSP 1 Score: 203 bits (516), Expect = 1.770e-56
Identity = 108/243 (44.44%), Postives = 158/243 (65.02%), Query Frame = 1
Query:    1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMT---YVSPGGG--GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
            M  I ANT VL+MD YP+ +    +++  N   T VF  EM + +A +G   Y ++ FN+FD  +VL  L+++ ++   ++S      G V++LR+FRLLRVFKLAR W+SL+ +L  +GR +  I NF +LL +FIYIYAL+GM+FF N + FD + G P       Y    VPR +FD  LW++ TVF+++T DNWNE ++   ++ G  A +Y ISL+VFG+FI+MN FLA+LL NF S+
Sbjct:   84 MCAIFANTAVLSMDHYPMSDTMDADLEIINFALTCVFVAEMIMKVAGLGIHLYTRDKFNLFDAFVVLMGLLEMALSPPSFMSENQPKKGSVASLRSFRLLRVFKLARSWKSLRELLEMVGRALASIANFGVLLFIFIYIYALVGMQFFGNTMRFD-SNGYPTPYNIYDYWSGTVPRLHFDTFLWSAITVFKIITTDNWNEDMYNVIRSSGMFAALYTISLIVFGNFIMMNLFLALLLDNFSSD 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI93_ECTSI6.830e-6450.21Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE1.290e-6350.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PB29_9STRA1.770e-6345.42Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2D4C0A0_PYTIN2.950e-6046.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CR88_PYTOL3.540e-5945.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXB3_9STRA5.640e-5845.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A812PGF5_9DINO8.450e-5845.12CACNA1I protein (Fragment) n=1 Tax=Symbiodinium sp... [more]
A0A6A3UMN1_9STRA1.410e-5745.31Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A5A8D9W3_CAFRO1.480e-5745.12Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A833TFH4_PHYIN1.770e-5644.44Ion transport protein n=1 Tax=Phytophthora infesta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1408contigP-wetherbeei_contig1408:2430..4168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LI93
PFAMsGPHH,Ion_trans
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.12e-64
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota
Descriptionmembrane depolarization during action potential
Cds size714
COG categoryU
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.910733-CDS-P-wetherbeei_contig1408:2429..25851683186007.910733-CDS-P-wetherbeei_contig1408:2429..2585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1408 2430..2585 -
1683186007.931344-CDS-P-wetherbeei_contig1408:2843..29781683186007.931344-CDS-P-wetherbeei_contig1408:2843..2978Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1408 2844..2978 -
1683186007.9416509-CDS-P-wetherbeei_contig1408:3356..37351683186007.9416509-CDS-P-wetherbeei_contig1408:3356..3735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1408 3357..3735 -
1683186007.951228-CDS-P-wetherbeei_contig1408:4124..41681683186007.951228-CDS-P-wetherbeei_contig1408:4124..4168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1408 4125..4168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1408.1.1prot_P-wetherbeei_contig1408.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1408 2430..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1408.1.1

>prot_P-wetherbeei_contig1408.1.1 ID=prot_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGW
RAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGGGGGVSALRTFRLLRVFKL
ARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFD
PATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFEC
WKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE
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mRNA from alignment at P-wetherbeei_contig1408:2430..4168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1408.1.1 ID=mRNA_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1739bp|location=Sequence derived from alignment at P-wetherbeei_contig1408:2430..4168- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTCATCATCGCCAACACGGTCGTTTTGGCCATGGACAGGTGCGT TGGAACGGTTGTCTTCCCGGCATGTGACGATGGGGTTGGAGCGAAGCCGC ATTGCTGGAGGTGTGTTTGTCATGGAAGGAGAATGCCTCCTGTAATTAGG AGAGATTGCTGTTCGAAAATCATTGTTGCTTCTGCTGCCGCACCCATCTT GCACGGCTGTTGGCTTGGTTGCTGGCGTCGCTGCCATGCCGTTCAAAGCT CTTCGCCTTTCGGCCATTCAATTGCTCTTCAGCTTTTTTGCGTATAACGC CCTAGTTAAGCAACTTTCTTCGGAGCTTCCGACGCTTGCGCTTCAGGCGT ACTTTCATTCTTCCTCTTGATCACATGACGACAATTAAGAATCGGCAACG GGAATGAACGACGCCTCTGCCCGCACCTGGCAGGTACCCAATCCCGGAGC AGCAGACGGAAAACATGGATCGCGCCAACCTCGTCTTTACCGCCGTTTTC GCGCTGGAAATGGCGGTCACCCTCGCCGCCGTCGGCTGGCGCGCCTACTG GCAGAACGCCTTCAACGTGTTCGACGGCGTCATCGTCCTGTCATCGCTCA TCGACCTGATCATGACGTATGTGTCGCCCGGCGGCGGCGGCGGCGTGTCG GCATTGCGCACCTTCCGGCTGCTCCGGGTGTTTAAACTGGCGCGGCGGTG GCGAAGCCTGCAGACCGTGCTGCGGGCGATGGGGCGGACAGTCCTGCAGA TCGGAAACTTCGCCATGCTGCTGGCACTCTTCATCTACATCTACGCCCTC ATCGGCATGGAGGTGCGCTCTCCCTCCTTCCTTGTTGTTTCTCCTTTGCG CCTTGGTTTCAGGGATCGTTTCCATTGCCTGCTGCCCAGAGAAACTGCTG AATCAGCTAACTGATAGAGGCGTCAAAAGGTCTATTGCGATCAGCGCGAT CGAAGTTATTTTCTCTGCTTCCTTCCCGCTACTCCCCCCTTTCTCATCGT TGAAACTCCTCAAAAAGGACTGAAAAGGTACCGATTAATATTAGCGTCTG TAGTGGTGCGGGTAAAGTATAGCCGCTTCTCACACAGCTCTTTGAACGGA GGCTTCTGATTGATTGAAAGACCCGAACCTTATGCTGATGCTGCCATCCA CCTTGCTTTCTTGCCCGTCGTTTCGCTGCCTGCTGCGCAGTTCTTCGCCA ACCACCTGCACTTTGACCCGGCGACAGGGGTGCCGCTCAGCATCACCGAC GACGGCTACGAGGAGGCGGACGTGCCCCGCAACAACTTCGACGGCATACT CTGGGCTTCCACCACCGTATTCCAGGTAAGCGATTTTAATACAAGGGTAC CGGCGTCGTCAAGCAGTGGCTGATGGCCAGGCGCGATGGCCTCTGCCTCT GCCGCTCTTTCTTCTGGCGCCGTCCTTGTATCGTCTTCGGTCTGCGACGC CCTTGCTCGCCACCTAGTACATTCCTTTCTAACCTTCCGTGTCCGCCACC CGCCACCACTCATTCTTCATTTTTCCTTCTTTCCTGGCCTCTCTTTTCGA GTTTTCGTTACGTAACGAAACGGTGGCCGCAAGGTCTTAACCCGCGATAA CTGGAACGAGCTTCTCTTCGAGTGCTGGAAGGCCGTCGGCGCCATCGCTC CCGTGTACTTCATTTCTCTGATGGTGTTTGGCAGTTTCATCGTCATGAAT ACATTCCTGGCCATTCTGCTCTCCAACTTTGAGTCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1408:2430..4168-

>mRNA_P-wetherbeei_contig1408.1.1 ID=mRNA_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig1408:2430..4168- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTCATCATCGCCAACACGGTCGTTTTGGCCATGGACAGGTACCC
AATCCCGGAGCAGCAGACGGAAAACATGGATCGCGCCAACCTCGTCTTTA
CCGCCGTTTTCGCGCTGGAAATGGCGGTCACCCTCGCCGCCGTCGGCTGG
CGCGCCTACTGGCAGAACGCCTTCAACGTGTTCGACGGCGTCATCGTCCT
GTCATCGCTCATCGACCTGATCATGACGTATGTGTCGCCCGGCGGCGGCG
GCGGCGTGTCGGCATTGCGCACCTTCCGGCTGCTCCGGGTGTTTAAACTG
GCGCGGCGGTGGCGAAGCCTGCAGACCGTGCTGCGGGCGATGGGGCGGAC
AGTCCTGCAGATCGGAAACTTCGCCATGCTGCTGGCACTCTTCATCTACA
TCTACGCCCTCATCGGCATGGAGTTCTTCGCCAACCACCTGCACTTTGAC
CCGGCGACAGGGGTGCCGCTCAGCATCACCGACGACGGCTACGAGGAGGC
GGACGTGCCCCGCAACAACTTCGACGGCATACTCTGGGCTTCCACCACCG
TATTCCAGGTCTTAACCCGCGATAACTGGAACGAGCTTCTCTTCGAGTGC
TGGAAGGCCGTCGGCGCCATCGCTCCCGTGTACTTCATTTCTCTGATGGT
GTTTGGCAGTTTCATCGTCATGAATACATTCCTGGCCATTCTGCTCTCCA
ACTTTGAGTCGGAG
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