mRNA_P-wetherbeei_contig10332.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10332.1.1
Unique NamemRNA_P-wetherbeei_contig10332.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A3C0TTM2_9PROT (UPF0260 protein DCO82_04430 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTM2_9PROT)

HSP 1 Score: 249 bits (637), Expect = 3.910e-83
Identity = 109/148 (73.65%), Postives = 126/148 (85.14%), Query Frame = 1
Query:    4 VMSTEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWP 447
            +M+ + FW+ KRL +M+ +EWEALCDGC KCCLVKLEDED G++HYT+VACALLDAG CRC DY NRQKRVSDCV LTPENI RVK+WMPS+CAYRLLA+G+PLPQWH+L CGD  AVH  G SV GRCV+ETGI IDDLP +IV WP
Sbjct:    1 MMAQDDFWKRKRLSQMTAQEWEALCDGCAKCCLVKLEDEDDGRVHYTNVACALLDAGICRCSDYENRQKRVSDCVILTPENIHRVKEWMPSTCAYRLLAEGRPLPQWHHLVCGDRDAVHHTGISVQGRCVSETGIAIDDLPDYIVGWP 148          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A352KF98_9PROT (UPF0260 protein DCO73_13965 n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KF98_9PROT)

HSP 1 Score: 209 bits (533), Expect = 3.560e-67
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 1
Query:   19 PFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIV 438
            PFW +K L  +S +EWEALCDGCGKCCLVKLEDED G IHYTDV CALLD   CRC DY+NR +R+ DCV LTPENI  VK WMP SCAYRL+A+GKPLP WH+L CGD   VHR GKSV+G    E+ +   +LP HI+
Sbjct:   13 PFWESKSLDALSRDEWEALCDGCGKCCLVKLEDEDDGTIHYTDVGCALLDIAACRCSDYTNRAERMPDCVILTPENIGEVKHWMPQSCAYRLIAEGKPLPAWHHLVCGDRQMVHRRGKSVIGIAAIESEVPEAELPAHII 152          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A2Z4UG55_9HYPH (UPF0260 protein RHODOSMS8_00490 n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UG55_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 3.520e-62
Identity = 86/150 (57.33%), Postives = 112/150 (74.67%), Query Frame = 1
Query:    1 EVMSTEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWPR 450
            E ++ +PFW+ K++ EMS EEWE+LCDGC KCCL+KLEDEDTG++ YTD++C+LLD   C+C DY NR  +V DCVTLTPEN+ ++  WMPS+CAYRLLA+G+ LP WH L  G+  +VH  G SV GR V+E  ++  DL G IV WP 
Sbjct:    3 EKLTEQPFWQTKKMTEMSREEWESLCDGCAKCCLIKLEDEDTGELEYTDISCSLLDCETCQCGDYPNRSVKVPDCVTLTPENVQQLN-WMPSTCAYRLLANGEDLPWWHPLVSGEQESVHLAGMSVRGRTVSEDDVDPTDLEGRIVTWPE 151          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: Y898_PARL1 (UPF0260 protein Plav_0898 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=Y898_PARL1)

HSP 1 Score: 195 bits (495), Expect = 1.970e-61
Identity = 89/144 (61.81%), Postives = 107/144 (74.31%), Query Frame = 1
Query:   16 EPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWP 447
            EPFWR KRL +M+  EWE+LCDGC KCCLVKLEDEDTG++ YTD+AC LLDA  CRC DY+NR +RV DCVTLTP+N++ +  WMP SCAYRLL +GK LP WH L  G+  AV   G SV GR + E   +++DL G IV WP
Sbjct:    6 EPFWRAKRLEQMTRAEWESLCDGCAKCCLVKLEDEDTGELEYTDIACRLLDAETCRCSDYANRSERVPDCVTLTPKNLEDI-DWMPPSCAYRLLKEGKDLPWWHPLVSGEYEAVRLAGMSVHGRFLFEDEADMEDLEGRIVSWP 148          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A2E1EKR1_9HYPH (UPF0260 protein CMI62_16210 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E1EKR1_9HYPH)

HSP 1 Score: 192 bits (489), Expect = 1.610e-60
Identity = 90/146 (61.64%), Postives = 105/146 (71.92%), Query Frame = 1
Query:   10 STEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWP 447
            S EPFWR KRL EM+ EEWE+LCDGC KCCLVKLEDEDTG+I YTD+AC LLDA  CRC DY NR  RV DCVTLT EN++ +  WMP SCAY+L+ +GK LP WH L  G+  AV   G SV GR + E   +++DL   IV WP
Sbjct:    4 SPEPFWRVKRLDEMTREEWESLCDGCAKCCLVKLEDEDTGEIEYTDIACRLLDAETCRCSDYPNRSTRVPDCVTLTVENLEDI-DWMPPSCAYKLIKEGKDLPWWHPLVSGEYEAVRLAGMSVYGRFLYEDEADMEDLEERIVDWP 148          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A085FPK6_9HYPH (UPF0260 protein FG93_01769 n=2 Tax=unclassified Bosea TaxID=2653178 RepID=A0A085FPK6_9HYPH)

HSP 1 Score: 190 bits (483), Expect = 1.940e-59
Identity = 87/145 (60.00%), Postives = 103/145 (71.03%), Query Frame = 1
Query:   16 EPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRC-VNETGIEIDDLPGHIVRWP 447
            EPFWR+K L EM+P+EWE+LCDGCG+CCLVKLEDEDTG+IH TD+ C L DAG CRC DYSNR   V DCVTLTP+ + R   W+P +CAYRL+ +G+ LP WH L  GD   V   G SV GR   +E  +  DDLP  IV WP
Sbjct:    9 EPFWRSKTLDEMTPQEWESLCDGCGRCCLVKLEDEDTGRIHATDIGCRLFDAGACRCKDYSNRSTIVPDCVTLTPDEV-RTLPWLPPTCAYRLVGEGRDLPWWHPLVSGDPATVVAAGVSVRGRVFASEDDVHEDDLPERIVNWP 152          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A6G6WX36_9HYPH (UPF0260 protein G5V57_19075 n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WX36_9HYPH)

HSP 1 Score: 189 bits (480), Expect = 3.770e-59
Identity = 86/146 (58.90%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   13 TEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWPR 450
            +EPFW+ K L EM+PEEWE+LCDGCG+CCLVKLEDEDTGKIH+T++AC LLD   CRC DY+NR  RV DCV LTPEN+  +  W+P SCAYR LA G+PL  WH L  G    V   G SV GR  +E G+  +DL  H+ + PR
Sbjct:    2 SEPFWKTKTLAEMTPEEWESLCDGCGRCCLVKLEDEDTGKIHFTNLACKLLDRKSCRCSDYTNRSARVPDCVRLTPENVGTLN-WLPDSCAYRRLAKGQPLAWWHPLVSGRKATVMEAGISVSGRIRSEEGVAEEDLEDHLWKLPR 146          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A059FP21_9PROT (UPF0260 protein HJO_10039 n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059FP21_9PROT)

HSP 1 Score: 188 bits (478), Expect = 8.630e-59
Identity = 84/144 (58.33%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   13 TEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRW 444
            TEPFW+   L +M  E+WE+LCDGC KCCL+KLEDEDTG+I YT + C LLDAG C+C DY+NR+++V DCV LTP  I+ +  WMPS+CAYRL+ +GKPLP WH+L CGD   VH  G SV GR V+E  +  DD+   IV W
Sbjct:    8 TEPFWKTIPLDKMDSEQWESLCDGCAKCCLLKLEDEDTGEIAYTKLHCTLLDAGTCQCSDYANRKQKVPDCVKLTPAGIEELP-WMPSTCAYRLIHEGKPLPDWHHLVCGDRERVHTEGHSVRGRTVSEDTVFEDDMEDFIVDW 150          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A2E7IPT0_9GAMM (UPF0260 protein CMN85_12545 n=1 Tax=Spongiibacteraceae bacterium TaxID=2026793 RepID=A0A2E7IPT0_9GAMM)

HSP 1 Score: 187 bits (476), Expect = 1.180e-58
Identity = 83/141 (58.87%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   22 FWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRW 444
            FW NK L  MS +EWE LCDGCGKCCL KLEDED GKI+YT VAC LLD   CRC  Y+ R      CV LTP+++D + QW+P SC+YR + DG+ LPQWH+L CGD   VHR G S++GRCV+E  +  DDL  HIV+W
Sbjct:    4 FWENKTLSSMSDKEWELLCDGCGKCCLHKLEDEDDGKIYYTGVACQLLDVESCRCSHYAERLSLEPTCVKLTPDDVDNL-QWLPGSCSYRRVQDGRGLPQWHHLICGDREEVHRGGHSIMGRCVSERHVHPDDLVEHIVQW 143          
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Match: A0A062U859_9PROT (UPF0260 protein HY2_08985 n=3 Tax=Hyphomonas TaxID=85 RepID=A0A062U859_9PROT)

HSP 1 Score: 187 bits (476), Expect = 1.630e-58
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 1
Query:   13 TEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVACALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADGKPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRW 444
            TEPFW+ K L +M+ +EWE+LCDGCGKCCL+KLEDEDTG+I YT + C L D+G C+C DY NR+K V DCV LTP+ ++ ++ WMP +CAYRL+ +GK LP WHYL CGD   +H  G S+ GR V+E  +  +D    IV W
Sbjct:    8 TEPFWKTKTLDQMNRQEWESLCDGCGKCCLLKLEDEDTGEIAYTRLHCRLFDSGTCQCADYENRKKIVEDCVILTPQKVEEIR-WMPKTCAYRLIHEGKDLPSWHYLVCGDRERIHEEGHSIRGRTVSEDTVFEEDTEDWIVDW 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10332.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTM2_9PROT3.910e-8373.65UPF0260 protein DCO82_04430 n=1 Tax=Alphaproteobac... [more]
A0A352KF98_9PROT3.560e-6765.71UPF0260 protein DCO73_13965 n=3 Tax=Alphaproteobac... [more]
A0A2Z4UG55_9HYPH3.520e-6257.33UPF0260 protein RHODOSMS8_00490 n=2 Tax=Hyphomicro... [more]
Y898_PARL11.970e-6161.81UPF0260 protein Plav_0898 n=1 Tax=Parvibaculum lav... [more]
A0A2E1EKR1_9HYPH1.610e-6061.64UPF0260 protein CMI62_16210 n=6 Tax=Alphaproteobac... [more]
A0A085FPK6_9HYPH1.940e-5960.00UPF0260 protein FG93_01769 n=2 Tax=unclassified Bo... [more]
A0A6G6WX36_9HYPH3.770e-5958.90UPF0260 protein G5V57_19075 n=2 Tax=Hyphomicrobial... [more]
A0A059FP21_9PROT8.630e-5958.33UPF0260 protein HJO_10039 n=2 Tax=Hyphomonas TaxID... [more]
A0A2E7IPT0_9GAMM1.180e-5858.87UPF0260 protein CMN85_12545 n=1 Tax=Spongiibactera... [more]
A0A062U859_9PROT1.630e-5855.56UPF0260 protein HY2_08985 n=3 Tax=Hyphomonas TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10332contigP-wetherbeei_contig10332:146..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_0898
Preferred nameMA20_15575
PFAMsCxxCxxCC
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09160
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.04e-62
EggNOG OGsCOG2983@1|root,COG2983@2|Bacteria,1RHMX@1224|Proteobacteria,2U99S@28211|Alphaproteobacteria,1JP4K@119043|Rhodobiaceae
DescriptionPutative zinc- or iron-chelating domain
Cds size447
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.074064-CDS-P-wetherbeei_contig10332:145..5921683185864.074064-CDS-P-wetherbeei_contig10332:145..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10332 146..592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.0847373-UTR-P-wetherbeei_contig10332:592..5981683185864.0847373-UTR-P-wetherbeei_contig10332:592..598Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10332 593..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10332.1.1prot_P-wetherbeei_contig10332.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10332 146..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10332.1.1

>prot_P-wetherbeei_contig10332.1.1 ID=prot_P-wetherbeei_contig10332.1.1|Name=mRNA_P-wetherbeei_contig10332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MSTEPFWRNKRLGEMSPEEWEALCDGCGKCCLVKLEDEDTGKIHYTDVAC
ALLDAGKCRCIDYSNRQKRVSDCVTLTPENIDRVKQWMPSSCAYRLLADG
KPLPQWHYLECGDLGAVHRLGKSVLGRCVNETGIEIDDLPGHIVRWPR*
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mRNA from alignment at P-wetherbeei_contig10332:146..598-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10332.1.1 ID=mRNA_P-wetherbeei_contig10332.1.1|Name=mRNA_P-wetherbeei_contig10332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10332:146..598- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCATGAGCACTGAGCCATTTTGGCGGAACAAGCGCCTCGGGGAAAT GTCCCCTGAAGAATGGGAGGCGCTGTGCGATGGCTGTGGCAAATGCTGCC TGGTCAAGCTGGAAGACGAGGATACCGGTAAAATTCATTACACGGATGTC GCCTGTGCCCTGCTGGATGCAGGAAAATGCAGGTGCATTGATTATTCCAA CCGGCAAAAACGTGTGTCCGATTGCGTCACGCTGACGCCTGAAAACATAG ATCGCGTCAAACAATGGATGCCATCAAGCTGCGCCTACCGCCTGCTTGCA GATGGCAAGCCGTTGCCGCAATGGCACTATCTGGAATGCGGGGATCTCGG GGCCGTGCACCGCCTGGGAAAGTCAGTGCTTGGGCGGTGCGTAAACGAAA CCGGAATAGAAATTGATGATCTGCCCGGCCACATCGTTCGCTGGCCCCGC TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10332:146..598-

>mRNA_P-wetherbeei_contig10332.1.1 ID=mRNA_P-wetherbeei_contig10332.1.1|Name=mRNA_P-wetherbeei_contig10332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig10332:146..598- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACTGAGCCATTTTGGCGGAACAAGCGCCTCGGGGAAATGTCCCC
TGAAGAATGGGAGGCGCTGTGCGATGGCTGTGGCAAATGCTGCCTGGTCA
AGCTGGAAGACGAGGATACCGGTAAAATTCATTACACGGATGTCGCCTGT
GCCCTGCTGGATGCAGGAAAATGCAGGTGCATTGATTATTCCAACCGGCA
AAAACGTGTGTCCGATTGCGTCACGCTGACGCCTGAAAACATAGATCGCG
TCAAACAATGGATGCCATCAAGCTGCGCCTACCGCCTGCTTGCAGATGGC
AAGCCGTTGCCGCAATGGCACTATCTGGAATGCGGGGATCTCGGGGCCGT
GCACCGCCTGGGAAAGTCAGTGCTTGGGCGGTGCGTAAACGAAACCGGAA
TAGAAATTGATGATCTGCCCGGCCACATCGTTCGCTGGCCCCGCTAA
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