mRNA_P-wetherbeei_contig140.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig140.5.1
Unique NamemRNA_P-wetherbeei_contig140.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig140.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig140contigP-wetherbeei_contig140:10796..11960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1166
Hectar predicted targeting categoryother localisation
Exons1
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.893754-CDS-P-wetherbeei_contig140:10795..115601683186004.893754-CDS-P-wetherbeei_contig140:10795..11560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig140 10796..11560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.9013784-UTR-P-wetherbeei_contig140:11560..119601683186004.9013784-UTR-P-wetherbeei_contig140:11560..11960Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig140 11561..11960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig140.5.1prot_P-wetherbeei_contig140.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig140 10796..11560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig140.5.1

>prot_P-wetherbeei_contig140.5.1 ID=prot_P-wetherbeei_contig140.5.1|Name=mRNA_P-wetherbeei_contig140.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MEDAPIPRKKKHGAVDDEQEPNSTKQGHSPREHCGRDHSIDRGRHDRSSS
RERDRDRKRKSRDRDGGHGGTSRNGRSATDRSHSRRSESREGHSRSRGSR
RDRSNSRSRSRESRDNSHGGNGGIRGRHRRQKGRSGGSRSRSRSRSRSRS
HSRSRSRSRSSRSPFRSRRHDDSGRRCNDKHSASPPAAGSRGAGAKEQRP
RDEPSTPREGGLASAFPPPPPAVAGIPNPAEAPIPRKKKIVIENHAERQP
SVSTP
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mRNA from alignment at P-wetherbeei_contig140:10796..11960-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig140.5.1 ID=mRNA_P-wetherbeei_contig140.5.1|Name=mRNA_P-wetherbeei_contig140.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1165bp|location=Sequence derived from alignment at P-wetherbeei_contig140:10796..11960- (Phaeothamnion wetherbeei SAG_119_79)
GCGTGCAAAGGGAGACAAGATACGGCATTCCCAATGAATTCAGGGTGGCG
GTAATCCGCGTTTATTCTGTTGCTTAAGGACGAGCGCGCTCTCCGGAAGG
GAAGATCCAGCGTGAGGAACCTTTTCGACCCCCGAATAAGAGGCAAGAAG
TGGAAAAAGTGTAGCGGCGAGGATATCATCAACAAAGGCTTTCCTTCCGT
CCCACGAGCCTGGAAACGTTCACCCGAAGCTCTCGCTCGGATACCTTCGA
GACTGAGCGGCTGCAGGTGACGCGCTGGTCGTTGAGTTCGGGTGTCCTGT
CGAGGTCGAGGTGGCCTAGACGAGAGATCGGGGCATTTTTTTCGTCTAGA
CGACCTTCACCGTGATCGTGCACCGCGACTGGTGAGGAAAGGGGTGCAAC
ATGGAGGATGCGCCAATCCCACGGAAGAAGAAACACGGCGCGGTGGACGA
CGAACAAGAGCCCAACTCAACAAAACAGGGACACAGCCCCCGTGAACACT
GCGGAAGAGACCACAGCATCGACCGAGGCCGCCACGACCGCAGCTCCAGC
CGCGAGCGCGACAGGGACCGGAAGCGCAAGTCTCGGGACCGGGATGGCGG
TCACGGCGGCACGAGCAGGAACGGCAGGTCTGCTACAGATCGGAGCCATT
CTCGGCGCAGCGAAAGCCGCGAAGGGCATTCTCGCAGCCGTGGGAGCCGG
CGGGACCGTTCCAATTCGCGGTCGCGAAGCAGGGAGAGCAGGGACAACAG
CCATGGCGGCAACGGTGGCATCCGCGGCCGCCATCGGCGACAGAAGGGCC
GTTCCGGCGGCTCCCGGTCGCGCTCGCGCTCGCGCTCCCGCTCCCGTTCG
CACTCTCGGTCGCGCTCCCGCTCTCGATCTTCGCGCTCGCCGTTCCGGTC
GCGGCGGCATGACGACAGCGGCCGGCGCTGCAATGACAAGCATTCTGCCT
CGCCGCCGGCCGCCGGCAGCCGCGGTGCCGGCGCCAAGGAGCAGCGGCCG
CGCGACGAGCCCTCCACGCCGAGGGAGGGCGGGCTCGCCAGCGCATTCCC
CCCGCCGCCGCCGGCGGTGGCTGGCATCCCCAATCCTGCCGAGGCCCCGA
TCCCCCGCAAGAAGAAGATCGTAATCGAGAACCATGCGGAGAGGCAGCCC
AGCGTCTCGACCCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig140:10796..11960-

>mRNA_P-wetherbeei_contig140.5.1 ID=mRNA_P-wetherbeei_contig140.5.1|Name=mRNA_P-wetherbeei_contig140.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig140:10796..11960- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATGCGCCAATCCCACGGAAGAAGAAACACGGCGCGGTGGACGA
CGAACAAGAGCCCAACTCAACAAAACAGGGACACAGCCCCCGTGAACACT
GCGGAAGAGACCACAGCATCGACCGAGGCCGCCACGACCGCAGCTCCAGC
CGCGAGCGCGACAGGGACCGGAAGCGCAAGTCTCGGGACCGGGATGGCGG
TCACGGCGGCACGAGCAGGAACGGCAGGTCTGCTACAGATCGGAGCCATT
CTCGGCGCAGCGAAAGCCGCGAAGGGCATTCTCGCAGCCGTGGGAGCCGG
CGGGACCGTTCCAATTCGCGGTCGCGAAGCAGGGAGAGCAGGGACAACAG
CCATGGCGGCAACGGTGGCATCCGCGGCCGCCATCGGCGACAGAAGGGCC
GTTCCGGCGGCTCCCGGTCGCGCTCGCGCTCGCGCTCCCGCTCCCGTTCG
CACTCTCGGTCGCGCTCCCGCTCTCGATCTTCGCGCTCGCCGTTCCGGTC
GCGGCGGCATGACGACAGCGGCCGGCGCTGCAATGACAAGCATTCTGCCT
CGCCGCCGGCCGCCGGCAGCCGCGGTGCCGGCGCCAAGGAGCAGCGGCCG
CGCGACGAGCCCTCCACGCCGAGGGAGGGCGGGCTCGCCAGCGCATTCCC
CCCGCCGCCGCCGGCGGTGGCTGGCATCCCCAATCCTGCCGAGGCCCCGA
TCCCCCGCAAGAAGAAGATCGTAATCGAGAACCATGCGGAGAGGCAGCCC
AGCGTCTCGACCCCA
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