mRNA_P-wetherbeei_contig14.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig14.4.1
Unique Name	mRNA_P-wetherbeei_contig14.4.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835YVU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.580e-37
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1

Query:    1 MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +R  +GR + ARMG RT+VI D+P VHQL E+FVSK F++ Y F S++VHG S  DHFVHRFTHRV RG L+AVGRPDGR+C+L KTE TVLLA+KQA F++N G
Sbjct: 1058 LRMAQGRPAWARMGARTIVIVDMPMVHQLTESFVSKLFSMGYSFVSVDVHGASGADHFVHRFTHRVVRGLLLAVGRPDGRLCALTKTEATVLLAVKQAVFIDNWG 1162

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835Y6D4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y6D4_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 2.420e-34
Identity = 66/105 (62.86%), Postives = 80/105 (76.19%), Query Frame = 1

Query:    1 MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +R  +GR    RMGKRT+V+ADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1738 LRALQGRPLWHRMGKRTIVVADVPYVHQILETFVSKMYALSYGIASVEVHGANPLDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1842

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1Y1HXS6_KLENI (Putative Glutamine amidotransferase type II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXS6_KLENI)

HSP 1 Score: 133 bits (334), Expect = 6.080e-34
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 1

Query:   13 EGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +GR+  AR+GKRTLVI DVPYVHQLLE +VSK FALSY   SI+VHG++P DH VHRFTHRV RG L+A+GRPDGR+C+  K+E  VL+A+ Q   + N G
Sbjct: 1005 QGRQLLARLGKRTLVIGDVPYVHQLLEVYVSKLFALSYSIASIDVHGSNPLDHLVHRFTHRVVRGVLLAIGRPDGRLCTQTKSESWVLMALLQCKSIINGG 1105

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IZH8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Pleodorina californica TaxID=47285 RepID=A0A1W5IZH8_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 6.100e-34
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1

Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:   85 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 178

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IU17_PANMO (Uncharacterized protein (Fragment) n=1 Tax=Pandorina morum TaxID=33099 RepID=A0A1W5IU17_PANMO)

HSP 1 Score: 132 bits (333), Expect = 7.660e-34
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 1

Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+VIADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  329 RMGKRTIVIADVPYVHQILETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 422

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IZ57_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Platydorina caudata TaxID=51709 RepID=A0A1W5IZ57_9CHLO)

HSP 1 Score: 132 bits (332), Expect = 1.090e-33
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1

Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  423 RMGKRTIVVADVPYVHQILETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 516

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W6R6N1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Yamagishiella unicocca TaxID=51707 RepID=A0A1W6R6N1_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 1.500e-33
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1

Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  406 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPADHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 499

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A150H4P4_GONPE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4P4_GONPE)

HSP 1 Score: 131 bits (330), Expect = 2.120e-33
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1

Query:   13 EGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +GR    RMGKRT+V+ADVPYVHQ++E FVSK +AL+YG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1499 QGRPIWHRMGKRTIVVADVPYVHQIIETFVSKMYALAYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1599

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835VV21_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VV21_CHLIN)

HSP 1 Score: 131 bits (330), Expect = 2.120e-33
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1

Query:    7 RWEGRRS-GARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RW  RR    RMGKRT+V+ADVPYVHQ++E +VSK +AL+YG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + N G
Sbjct: 1747 RWLQRRPIWHRMGKRTIVVADVPYVHQIIETYVSKMYALAYGIASVEVHGANPLDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITNWG 1850

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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A8J4EV38_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EV38_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 2.130e-33
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1

Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1767 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1860

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YVU8_9STRA	2.580e-37	64.76	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Y6D4_9CHLO	2.420e-34	62.86	Uncharacterized protein n=1 Tax=Edaphochlamys deba...	[more]
A0A1Y1HXS6_KLENI	6.080e-34	63.37	Putative Glutamine amidotransferase type II n=1 Ta...	[more]
A0A1W5IZH8_9CHLO	6.100e-34	65.96	Uncharacterized protein (Fragment) n=1 Tax=Pleodor...	[more]
A0A1W5IU17_PANMO	7.660e-34	68.09	Uncharacterized protein (Fragment) n=1 Tax=Pandori...	[more]
A0A1W5IZ57_9CHLO	1.090e-33	67.02	Uncharacterized protein (Fragment) n=1 Tax=Platydo...	[more]
A0A1W6R6N1_9CHLO	1.500e-33	65.96	Uncharacterized protein (Fragment) n=1 Tax=Yamagis...	[more]
A0A150H4P4_GONPE	2.120e-33	62.38	Glutamine amidotransferase type-2 domain-containin...	[more]
A0A835VV21_CHLIN	2.120e-33	62.50	Uncharacterized protein n=1 Tax=Chlamydomonas ince...	[more]
A0A8J4EV38_9CHLO	2.130e-33	65.96	Uncharacterized protein n=2 Tax=Volvox africanus T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig14	contig	P-wetherbeei_contig14:11679..12833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	3067.XP_002951461.1
PFAMs	EF-hand_7
Model size	315
Max annot lvl	3041\|Chlorophyta
Hectar predicted targeting category	other localisation
Exons	3
Evalue	1.64e-33
EggNOG OGs	29176@1\|root,2R831@2759\|Eukaryota,37UWH@33090\|Viridiplantae,34HWI@3041\|Chlorophyta
Cds size	315

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186004.8160994-CDS-P-wetherbeei_contig14:11678..11762	1683186004.8160994-CDS-P-wetherbeei_contig14:11678..11762	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig14 11679..11762 +
1683186004.8267918-CDS-P-wetherbeei_contig14:12038..12096	1683186004.8267918-CDS-P-wetherbeei_contig14:12038..12096	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig14 12039..12096 +
1683186004.8354514-CDS-P-wetherbeei_contig14:12660..12833	1683186004.8354514-CDS-P-wetherbeei_contig14:12660..12833	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig14 12661..12833 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig14.4.1	prot_P-wetherbeei_contig14.4.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig14 11679..12833 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig14:11679..12833+
coding sequence from alignment at P-wetherbeei_contig14:11679..12833+

protein sequence of mRNA_P-wetherbeei_contig14.4.1

>prot_P-wetherbeei_contig14.4.1 ID=prot_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVH
GTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAF
VENRG

mRNA from alignment at P-wetherbeei_contig14:11679..12833+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig14.4.1 ID=mRNA_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig14:11679..12833+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGGTGGGAAGGGCGGCGGTCAGGGGCACGGATGGGCAAGCGGAC
ACTCGTCATCGCCGACGTGCCGTACGTCCACCAGGTGATGCACGGGAACG
AGAAGTGGCGGCCGCCTCGGAGGAGAACGCGTCACCTGCCTGCAGTAACC
CTTTTCTTCTCGGCTGCGTGGGGCTGCATGAGGCGACACACCGCCGTGCT
TCCGCATATCTCTTCCTGCTTCTCGATTCAGCGCAAATAGACTAAAGGTC
ATACGACAATGACGACTTCCTGTAGCCACGTGCTTAATCTTTCATGCCTC
TGGCGCCTGGCCAAATCTAAACCCACCTTTCAATTTTCTTATTCTTCTCC
TTCGTTTCAGCTCCTGGAAAACTTCGTCTCCAAGTGCTTTGCGCTCAGCT
ATGGCTTTCAATCCATCGGTGAGTCGGATTGCAGCTGTCAATTGAGTTGG
GGCGTACATAGCTCGTTTCCCTTCGCTGTTTAAAGACAGCAAAGGGAAGT
GGTTCCAGGCGAAAGTGCGGTGACGGTGGTGGCGGCGGCATGGCACCCGA
GCGGGCCAGCCGTGAAGCCGGTGGTTATGGTACCAGTGGCAGGCCAGCCC
CGCGCTTAGTGGAATCAGAACACGCATAGCACCCCATTTGACGCACCTTT
CCTTTGGCGCGCCCACCCTTCCGGCTCACCCTAAACGCCTTCCATTCTGA
CCGCTGCACGCCGTTGCGATCTTCCACTCCCAATCCCTCCACTGCCATCT
GCCGCGTACCGCCTGCCTCCATCTGCCACCGCCACCGCCGCCGCCATTGT
CGCCGCCGTCATTGTCGCCGTTGCCCCCGCCACCGTCGCCTGTCGCCCGC
TGCCGCCACCACCGCCACCACCACCTCTGCCGCCCGCCGCCGTCGGCCAC
CGCCCGCCCGCCTGACCCGCCTCTTTTCCTCCGGCCACCGCCACCGGCAA
CCCGCTCTCTCCATCCTGCTCCCGCCCCGCAGAGGTCCACGGCACGTCTC
CCAACGACCACTTTGTGCACCGCTTCACACACCGCGTCGCCCGTGGCACA
CTTATCGCCGTGGGGCGTCCAGACGGTCGCATCTGCTCGCTGCTCAAGAC
GGAAAAGACGGTGTTGCTCGCGATGAAGCAAGCGGCGTTCGTCGAGAACC
GCGGG

Coding sequence (CDS) from alignment at P-wetherbeei_contig14:11679..12833+

>mRNA_P-wetherbeei_contig14.4.1 ID=mRNA_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig14:11679..12833+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGGTGGGAAGGGCGGCGGTCAGGGGCACGGATGGGCAAGCGGAC
ACTCGTCATCGCCGACGTGCCGTACGTCCACCAGCTCCTGGAAAACTTCG
TCTCCAAGTGCTTTGCGCTCAGCTATGGCTTTCAATCCATCGAGGTCCAC
GGCACGTCTCCCAACGACCACTTTGTGCACCGCTTCACACACCGCGTCGC
CCGTGGCACACTTATCGCCGTGGGGCGTCCAGACGGTCGCATCTGCTCGC
TGCTCAAGACGGAAAAGACGGTGTTGCTCGCGATGAAGCAAGCGGCGTTC
GTCGAGAACCGCGGG