mRNA_P-wetherbeei_contig14.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14.3.1
Unique NamemRNA_P-wetherbeei_contig14.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A835Y6D4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y6D4_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-20
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFF---DALAATARAHRGCFGS-----VDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCG--FSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A+DL  +PR++ RI   W+   S N  TA   +   D LA  A    G   +     VDLLV GVE+SLW++EQW GD++  FP LNV   SANK++ +       +   G  F R +   L+    + ++VSQSGQTF T+HA  +L +++P
Sbjct: 1382 ADDLADVPRVLARIRESWTDPLSLNRQTAEELYGMIDKLAEFALRKGGSCAAEERPGVDLLVTGVEASLWLAEQWAGDLKLVFPQLNVQAVSANKIISTLGNARGRIPPTGSTFCRNSSRFLAEHHTLCIAVSQSGQTFPTIHAARILHQLLP 1534          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A835VV21_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VV21_CHLIN)

HSP 1 Score: 93.6 bits (231), Expect = 2.020e-19
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFFD--------ALAATARAHRGCFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCG--FSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A+DL  IP  ++RI   W+   S N  +A   FD        AL+  + A R     VDLL+ GVE+SLW++EQW GD++  FP LNV+  SANKV+         +   G  F R + + ++    + ++VSQSGQTF T+HA  +L +++P
Sbjct: 1393 ADDLSDIPHTLSRIRDSWTDPASLNRQSAEELFDHLDTLAEFALSNPSAADRP---GVDLLLTGVEASLWLAEQWAGDLKLVFPQLNVLALSANKVISVLGNARGRIPPTGSTFCRSSANMIADHHTLCIAVSQSGQTFPTIHACRILNQLLP 1542          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A8J5X648_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X648_DIALT)

HSP 1 Score: 92.8 bits (229), Expect = 3.670e-19
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALAATARAHRGC-FGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCGFSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A DLR  P +++ I+ +W+   S +   A+A  D L       R     ++DLL+ GVE SLW+++Q+  D+R  FP L V   S NK+LG S  + R   F G  RI+   + +D  V+L VSQSGQTF +LHA  LL  + P
Sbjct:  511 ALDLRETPAVLHAIDQDWADPASPSREAASALGDYLLQRMEVRRAARLDTIDLLIGGVEVSLWLAQQFASDMRAVFPSLTVKCVSTNKLLGISGFSPRRTFFAGNERISATQI-KDAAVLL-VSQSGQTFPSLHATRLLASLAP 652          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A8J4C7G7_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C7G7_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 9.540e-19
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFFDAL------AATARAHRGCFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCG--FSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A+DL+ +PR+++ +   W+   S N  TA   F  +      A T  A       VD+L+ GVESSLWI+EQW GD++  FP L+V   SANK++         +   G  F R +   L+    + +SVSQSGQTF T+HA  +L +++P
Sbjct: 1416 ADDLKDVPRVLSLLRDTWTDPNSLNRQTAEDLFQMIDKLVQFAMTGGASASERPGVDVLITGVESSLWIAEQWAGDLKLIFPQLSVKAVSANKIISVLGNARGRIPPTGSTFCRSSASFLADHHTLCISVSQSGQTFPTIHASRILNQLLP 1566          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A1Y1I6K7_KLENI (Putative type II Glutamine amidotransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6K7_KLENI)

HSP 1 Score: 90.1 bits (222), Expect = 3.220e-18
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    4 EDLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALAATA----RAHRGCFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCGFSRITRDDLSR--DRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            +D+  IP +++ I  +W+   S N  TA AFFDAL        R H+     +D+++ G ESSLWI+EQ+  D+   FP L V   S+NKV+    +    +   GF+      L++  D  VVL +SQSGQTF TLHA  +LL+  P
Sbjct:  759 QDIADIPAVISEIRAQWADKLSLNRRTAAAFFDALKGRVLEYHREHKREM-VIDVVITGCESSLWIAEQFASDLMNMFPQLYVAAISSNKVIQILGSNKGRISAAGFAF---GSLAQYLDTAVVLCISQSGQTFPTLHATRILLKQCP 902          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A482T860_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T860_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 7.960e-18
Identity = 58/144 (40.28%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALA-ATARAHRGCFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCGFSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            AEDLR  P +++ I+  WS   S       A    L  A  R       ++DLL+ GVE SLW++EQ+  D+R+ FP LNV  ASANK+LG       +V F     I    +  +  V+L VSQSGQTF TLHA   + + VP
Sbjct:  418 AEDLRITPAVLSAIDRAWSNAASMERQAGEALATCLVNAMYRRATNPKDTIDLLIGGVEVSLWLAEQFAADLRRIFPHLNVATASANKLLGMGEDNPSKVFFPVSDDIPSRKIDSNTCVLL-VSQSGQTFATLHATRKMAKFVP 560          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A1W5IZ57_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Platydorina caudata TaxID=51709 RepID=A0A1W5IZ57_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 1.450e-17
Identity = 57/153 (37.25%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFF---DALAATARA-HRGCFGS----VDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCG--FSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A+DL  + R+++RI   W+   S N  TA   +   D L   A + + G   S    +DLL+ GVE+SLW++EQW GD++  FP LNV   SANKV+         +   G  F R +   L+    + ++VSQSGQTF T+HA  +L +++P
Sbjct:   56 ADDLADLSRVLSRIRESWTDPLSLNRQTAEDLYQHLDRLVEFAMSSYTGSSPSERPGIDLLITGVEASLWLAEQWAGDLKLVFPQLNVQAVSANKVISVLGNARGRIPPTGSTFCRSSSAYLADHHTLCIAVSQSGQTFPTIHAARILNQLLP 208          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A8J4EV38_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EV38_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-17
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFF---DAL---AATARAHRGCFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCG--FSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP 429
            A+DL+ +PR+++ +   W+   S N  TA   F   D L   A T  A       VD+L+ GVE SLWI+EQW GD++  FP L+V   SANK++         +   G  F R +   L+    + ++VSQSGQTF T+HA  +L +++P
Sbjct: 1402 ADDLKDVPRVLSLVRDTWTDPNSLNRQTAEDLFVMIDKLVQFAMTGGASASERPGVDVLITGVEMSLWIAEQWAGDLKLVFPQLSVKAVSANKIISVLGNARGRIPPTGSTFCRSSASFLADHHTLCIAVSQSGQTFPTIHASRILNQLLP 1552          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A8J5XLW0_DIALT (Uncharacterized protein n=5 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLW0_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 2.850e-17
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query:    7 DLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALAATARAHRG-CFGSVDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCGFSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIV 426
            DL  IP+ +  I+ +W+     N  +A A    L +  R  R     ++DLL+ G+E+SLW++EQ+  D+ +  P L V   SANK+LG    T+  VHF G  RIT + ++     +L VS SGQTF  L A E L  +V
Sbjct:  662 DLGEIPQTIRAIDADWARRDGRNARSADALAALLLSAMRNRRAHTLQTIDLLIGGIEASLWLAEQFAVDLARICPWLTVRCVSANKLLGVLTATSNRVHFSGEERITPEQVAD--AAILLVSHSGQTFPALRATEYLERLV 800          
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Match: A0A1Y1HXS6_KLENI (Putative Glutamine amidotransferase type II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXS6_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 5.260e-17
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    7 DLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALAATARAHRGCFGS------VDLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVHFCGFSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELL 414
            D++ IPR++  I  EW+ + S N  TA A    L   A       G       +D+LV GVESSLW+ EQ+  D++   P L VV  S+NKV+G       ++   GFS   R   S    +V+++SQSGQTF TLHA  +L
Sbjct:  655 DIQDIPRVLATIRREWTTVGSLNQQTAGALLALLQEKAAMIGDAPGDGSTRKEIDVLVTGVESSLWVGEQFAADLQNFLPQLRVVPISSNKVIGVLGNARGKISTAGFS-FCRLTSSLRSTIVIAISQSGQTFPTLHATRIL 795          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Y6D4_9CHLO4.300e-2038.56Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835VV21_CHLIN2.020e-1937.91Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A8J5X648_DIALT3.670e-1939.58Uncharacterized protein n=4 Tax=Diacronema lutheri... [more]
A0A8J4C7G7_9CHLO9.540e-1937.09Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A1Y1I6K7_KLENI3.220e-1838.51Putative type II Glutamine amidotransferase n=1 Ta... [more]
A0A482T860_9ARCH7.960e-1840.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1W5IZ57_9CHLO1.450e-1737.25Uncharacterized protein (Fragment) n=1 Tax=Platydo... [more]
A0A8J4EV38_9CHLO1.550e-1737.09Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A8J5XLW0_DIALT2.850e-1737.59Uncharacterized protein n=5 Tax=Diacronema lutheri... [more]
A0A1Y1HXS6_KLENI5.260e-1738.73Putative Glutamine amidotransferase type II n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14contigP-wetherbeei_contig14:9209..10448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX36351
Model size430
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.38e-16
EggNOG OGs29176@1|root,2R831@2759|Eukaryota
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.7730467-CDS-P-wetherbeei_contig14:9208..92591683186004.7730467-CDS-P-wetherbeei_contig14:9208..9259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 9209..9259 +
1683186004.7818651-CDS-P-wetherbeei_contig14:9635..98781683186004.7818651-CDS-P-wetherbeei_contig14:9635..9878Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 9636..9878 +
1683186004.7905924-CDS-P-wetherbeei_contig14:10313..104481683186004.7905924-CDS-P-wetherbeei_contig14:10313..10448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 10314..10448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14.3.1prot_P-wetherbeei_contig14.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14 9209..10448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14.3.1

>prot_P-wetherbeei_contig14.3.1 ID=prot_P-wetherbeei_contig14.3.1|Name=mRNA_P-wetherbeei_contig14.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
AEDLRSIPRLVNRINLEWSMLCSTNCLTATAFFDALAATARAHRGCFGSV
DLLVMGVESSLWISEQWGGDVRKAFPGLNVVVASANKVLGSSATTTREVH
FCGFSRITRDDLSRDRPVVLSVSQSGQTFGTLHAVELLLEIVP
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mRNA from alignment at P-wetherbeei_contig14:9209..10448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14.3.1 ID=mRNA_P-wetherbeei_contig14.3.1|Name=mRNA_P-wetherbeei_contig14.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1240bp|location=Sequence derived from alignment at P-wetherbeei_contig14:9209..10448+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAAGACCTGAGGAGCATCCCGCGGCTCGTCAACCGGATCAACTTGGA GGTTTGCGTGCATTTTTCTGTTGCTTTGACTTTTCGTGCATCTTCCGGTT GGAAGGGCTTTGGTACTATAACGAAGCGACACGCAAGATAGCGAAAGAAA TCGCGGGAAAGAGAATTATAGGTGGTGGCGGCGGCAGGCGATGAGTGACA GCTGCTGGCTGAAGTTGGCTCCGACTGGCGGCGGCTTGCGGCGGCTGGCA GAGGATGGTGGTGACTGACGGTAGCCAGCGCACCCCTTTCGCCAACAAGC TGCTGCCTTATTCCCACGGTGTCCCGTTCGCAATGTTTTTTACATCTCTT CTCCCCCGCCTCCAACTTCCCCCCTCCCCCTCCTTCCCGCCACTCTCCTA TCGCCCGCCGCCCAACGCCCCCTGCAGTGGTCGATGCTGTGCTCCACCAA CTGCCTCACCGCAACCGCCTTCTTCGACGCGCTAGCGGCCACCGCCCGTG CGCATCGGGGTTGCTTCGGCTCCGTCGACCTTCTGGTCATGGGGGTCGAG TCTAGTCTGTGGATCAGCGAGCAGTGGGGCGGCGACGTCCGAAAGGCGTT TCCGGGGCTGAATGTGGTGGTGGCATCCGCCAACAAGGTGCTGGGCAGCT CCGCCACCACGACGCGGGAGGTAAACGGGGGTGGGCGTGGCGCGATGCGG CGCTTTTTCTGTTTTACGATTTTCTGTTGTACGATTTCTGCTTTTGGTTT CTGTTTATGTGTTTCCATTTTCGATTTCTCTTTTATGCTTCTGTTTGCCG TCTTGTTGATCATTACCATTCTTGGATGTTAGCGAGATAGCGTGGGGAGA TATGCGGGCAGTTCGGTAGGCGGACGCTGTTTTGCTGTGTCAGTGAGTCT TTCTCTCTTCCTATTTGGCCAGGCGCTCCTGTATTCCGTGAAGACCGAAA GCAAAAGCTGTACGCACTGCACTTCCACTGACCCCGAGCTTCCTTTTCCC GCGGTGTTCTCACTGCCATGCCTCTTTCCTCTCTGGTGAAAACCTGCCGA CCTATTTGGGAAACCTCCGATCTCTTTTCTTGAATCCTTCCGAGAGCCTT CGCAGGTGCACTTCTGCGGCTTCTCCCGCATCACGCGCGACGACCTCAGC CGCGACCGCCCGGTTGTCCTTTCCGTCTCCCAATCGGGGCAGACCTTCGG CACTTTGCACGCCGTCGAGTTGCTTCTCGAAATTGTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14:9209..10448+

>mRNA_P-wetherbeei_contig14.3.1 ID=mRNA_P-wetherbeei_contig14.3.1|Name=mRNA_P-wetherbeei_contig14.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig14:9209..10448+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAAGACCTGAGGAGCATCCCGCGGCTCGTCAACCGGATCAACTTGGA
GTGGTCGATGCTGTGCTCCACCAACTGCCTCACCGCAACCGCCTTCTTCG
ACGCGCTAGCGGCCACCGCCCGTGCGCATCGGGGTTGCTTCGGCTCCGTC
GACCTTCTGGTCATGGGGGTCGAGTCTAGTCTGTGGATCAGCGAGCAGTG
GGGCGGCGACGTCCGAAAGGCGTTTCCGGGGCTGAATGTGGTGGTGGCAT
CCGCCAACAAGGTGCTGGGCAGCTCCGCCACCACGACGCGGGAGGTGCAC
TTCTGCGGCTTCTCCCGCATCACGCGCGACGACCTCAGCCGCGACCGCCC
GGTTGTCCTTTCCGTCTCCCAATCGGGGCAGACCTTCGGCACTTTGCACG
CCGTCGAGTTGCTTCTCGAAATTGTGCCG
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