mRNA_P-wetherbeei_contig14.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14.9.1
Unique NamemRNA_P-wetherbeei_contig14.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14contigP-wetherbeei_contig14:19753..20418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size666
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.7230144-UTR-P-wetherbeei_contig14:19752..197951683186004.7230144-UTR-P-wetherbeei_contig14:19752..19795Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14 19753..19795 +
1683186004.7455535-UTR-P-wetherbeei_contig14:20158..204181683186004.7455535-UTR-P-wetherbeei_contig14:20158..20418Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14 20159..20418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.7347708-CDS-P-wetherbeei_contig14:19795..201581683186004.7347708-CDS-P-wetherbeei_contig14:19795..20158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 19796..20158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14.9.1prot_P-wetherbeei_contig14.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14 19796..20158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14.9.1

>prot_P-wetherbeei_contig14.9.1 ID=prot_P-wetherbeei_contig14.9.1|Name=mRNA_P-wetherbeei_contig14.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MSESSTESSSSPVAMSDTASSQSSPIPATKLRRLNRDPPKDCPICHDFTL
YRVASHKGEVFKCRTCPGLTRRDASVRRTLPSFVISSLNDNRISRPRTHR
AMPARAMQRHSIEETDLQVN*
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mRNA from alignment at P-wetherbeei_contig14:19753..20418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14.9.1 ID=mRNA_P-wetherbeei_contig14.9.1|Name=mRNA_P-wetherbeei_contig14.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig14:19753..20418+ (Phaeothamnion wetherbeei SAG_119_79)
GACAGTTCCTCATCTACAAACTACGTACTCCCAGCACATCGTCATGAGCG
AGTCTTCCACTGAATCGTCATCGTCCCCCGTCGCCATGAGCGATACCGCT
TCGTCCCAATCCTCACCGATCCCAGCGACGAAATTGCGCCGATTGAATCG
CGACCCGCCCAAGGACTGCCCAATCTGCCATGATTTCACACTCTACAGGG
TCGCGAGCCACAAGGGCGAGGTGTTCAAGTGCCGCACCTGCCCCGGCCTC
ACCAGAAGGGATGCTTCCGTCAGGCGCACGCTGCCTTCCTTCGTCATCTC
TTCGCTAAACGACAACAGGATCTCGAGGCCAAGAACGCACCGAGCAATGC
CAGCACGAGCGATGCAGCGCCACAGCATCGAAGAGACCGATCTCCAGGTG
AATTGACCAGCATTCGCGTTCTATCGGCGACACATCTTTCCAATTTTTTT
CACGTCTTTTTCCCACTGAAGATGCGGCGTAAGCTTTTGCTTTTCTTGCT
GGACATTCCTTCGCACTCTCAATATCAAAATTTCATGTCGCACCCCTCTC
CTTCGTGCCTCCGCTTCTTTACTTGCCACAGGATCCTCCTTCCTCCGCCG
CCACGCACGTTCCCTGCTGCCCCTTCCAGTGCATACTACGAACCACCACA
CATCCAGCCACGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14:19753..20418+

>mRNA_P-wetherbeei_contig14.9.1 ID=mRNA_P-wetherbeei_contig14.9.1|Name=mRNA_P-wetherbeei_contig14.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14:19753..20418+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAGTCTTCCACTGAATCGTCATCGTCCCCCGTCGCCATGAGCGA
TACCGCTTCGTCCCAATCCTCACCGATCCCAGCGACGAAATTGCGCCGAT
TGAATCGCGACCCGCCCAAGGACTGCCCAATCTGCCATGATTTCACACTC
TACAGGGTCGCGAGCCACAAGGGCGAGGTGTTCAAGTGCCGCACCTGCCC
CGGCCTCACCAGAAGGGATGCTTCCGTCAGGCGCACGCTGCCTTCCTTCG
TCATCTCTTCGCTAAACGACAACAGGATCTCGAGGCCAAGAACGCACCGA
GCAATGCCAGCACGAGCGATGCAGCGCCACAGCATCGAAGAGACCGATCT
CCAGGTGAATTGA
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