mRNA_P-wetherbeei_contig13989.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13989.1.1
Unique NamemRNA_P-wetherbeei_contig13989.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13989contigP-wetherbeei_contig13989:577..1315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size739
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.3088372-UTR-P-wetherbeei_contig13989:576..6711683186004.3088372-UTR-P-wetherbeei_contig13989:576..671Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13989 577..671 -
1683186004.3275034-UTR-P-wetherbeei_contig13989:1229..13151683186004.3275034-UTR-P-wetherbeei_contig13989:1229..1315Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13989 1230..1315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.3183641-CDS-P-wetherbeei_contig13989:671..12291683186004.3183641-CDS-P-wetherbeei_contig13989:671..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13989 672..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13989.1.1prot_P-wetherbeei_contig13989.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13989 672..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13989.1.1

>prot_P-wetherbeei_contig13989.1.1 ID=prot_P-wetherbeei_contig13989.1.1|Name=mRNA_P-wetherbeei_contig13989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MGDDDGWNGGSVRADDAAADAAAAGGVGGGGGVGMIDAGSGGGGYCHGDA
GGGGGSGGGNVGTSAAADASRMEVDSFAEPASAVPDAVPLAASTAEPEAA
SGGGATNGPVPPYGCKGSGDDAAGYRERDRLHLSGCSSAGGGGGGLPSAG
GGMAVEEEQGKTGEEEVGGDGYITSLLDGATGAVQ*
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mRNA from alignment at P-wetherbeei_contig13989:577..1315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13989.1.1 ID=mRNA_P-wetherbeei_contig13989.1.1|Name=mRNA_P-wetherbeei_contig13989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=739bp|location=Sequence derived from alignment at P-wetherbeei_contig13989:577..1315- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCAGCGGGCGGTCCTCCCGCCGCCGGTCTCTCTCTCGCCGACGGCG
CAGGAGCCGGCAAACGTTGCGCCGGACCGTGACCACATGGGAGACGACGA
TGGTTGGAACGGTGGCAGCGTGAGGGCGGACGATGCCGCCGCAGACGCTG
CAGCCGCTGGCGGCGTCGGCGGTGGTGGCGGCGTCGGTATGATTGATGCT
GGGAGCGGCGGTGGCGGGTATTGCCATGGCGACGCTGGCGGCGGCGGCGG
CAGCGGCGGTGGCAACGTCGGCACCAGTGCCGCCGCGGACGCGAGCCGAA
TGGAAGTCGATTCTTTTGCCGAGCCGGCATCCGCCGTGCCGGACGCTGTG
CCTTTGGCAGCTAGCACCGCCGAGCCAGAAGCGGCCAGCGGGGGGGGCGC
GACGAACGGCCCGGTGCCTCCGTATGGCTGCAAAGGCAGCGGTGATGACG
CTGCGGGCTACAGGGAGCGAGACAGGCTTCACCTCTCCGGTTGCAGTAGT
GCCGGTGGCGGCGGTGGCGGCTTACCCTCCGCTGGCGGCGGGATGGCGGT
TGAAGAAGAGCAGGGGAAGACGGGGGAGGAGGAGGTTGGTGGGGACGGCT
ATATAACGTCGCTTCTCGACGGGGCTACCGGGGCTGTTCAGTGACCGATG
CCGCCGCTGTGGAGCTGCAGTGGGGCGGTTGGATCGGGGTCAGGCTTGGC
GGCCGGCATTGGCCGGTAGATAGATAGGTTGACTCGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13989:577..1315-

>mRNA_P-wetherbeei_contig13989.1.1 ID=mRNA_P-wetherbeei_contig13989.1.1|Name=mRNA_P-wetherbeei_contig13989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig13989:577..1315- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGACGACGATGGTTGGAACGGTGGCAGCGTGAGGGCGGACGATGC
CGCCGCAGACGCTGCAGCCGCTGGCGGCGTCGGCGGTGGTGGCGGCGTCG
GTATGATTGATGCTGGGAGCGGCGGTGGCGGGTATTGCCATGGCGACGCT
GGCGGCGGCGGCGGCAGCGGCGGTGGCAACGTCGGCACCAGTGCCGCCGC
GGACGCGAGCCGAATGGAAGTCGATTCTTTTGCCGAGCCGGCATCCGCCG
TGCCGGACGCTGTGCCTTTGGCAGCTAGCACCGCCGAGCCAGAAGCGGCC
AGCGGGGGGGGCGCGACGAACGGCCCGGTGCCTCCGTATGGCTGCAAAGG
CAGCGGTGATGACGCTGCGGGCTACAGGGAGCGAGACAGGCTTCACCTCT
CCGGTTGCAGTAGTGCCGGTGGCGGCGGTGGCGGCTTACCCTCCGCTGGC
GGCGGGATGGCGGTTGAAGAAGAGCAGGGGAAGACGGGGGAGGAGGAGGT
TGGTGGGGACGGCTATATAACGTCGCTTCTCGACGGGGCTACCGGGGCTG
TTCAGTGA
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