mRNA_P-wetherbeei_contig1398.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1398.1.2
Unique NamemRNA_P-wetherbeei_contig1398.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1398.1.2 vs. uniprot
Match: D7FZF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF3_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.620e-38
Identity = 80/138 (57.97%), Postives = 95/138 (68.84%), Query Frame = 3 
Query:  288 WNPPSLRALPRGGEGFASAWTHFGPLDRFELVKSANRSSNGHGQRLSDTELEWAVLCVEEAEELLQSLRFAEAAAVLERLLERCPSFTLAYAKLALAVLAARGPAAADDAVALLRRAAFLEP-DNEHLRGATELALRL 698
            W PP+LR LPRGGEGF S WTH G  +RFELVKSANRS    G+ LSD ELEWAVLC+EEAEE + ++ F+ AA +LE +L RCP  TLAY +LAL VLAARG   +  A  LL  A  LE  +N HL    +L LR+
Sbjct:   62 WRPPALRPLPRGGEGFFSGWTHLGQSERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMYFSTAAGILEGVLGRCPGLTLAYYRLALCVLAARGEHGSSQAKLLLDCAMSLEGVENRHLSAGVDLVLRI 199
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BLAST of mRNA_P-wetherbeei_contig1398.1.2 vs. uniprot
Match: A0A6H5KA32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA32_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.850e-36
Identity = 83/150 (55.33%), Postives = 100/150 (66.67%), Query Frame = 3 
Query:  258 SLSDRL--MDSVWNPPSLRALPRGGEGFASAWTHFGPLDRFELVKSANRSSNGHGQRLSDTELEWAVLCVEEAEELLQSLRFAEAAAVLERLLERCPSFTLAYAKLALAVLAARGPAAADDAVALLRRAAFLE-PDNEHLRGATELALRL 698
            +L DRL    + W PP LR LPRGGEGF S WTH G  +RFELVKSANRS    G+ LSD ELEWAVLC+EEAEE + ++ F+ AA +LE +L RCP  TLAY +LAL +LAARG   +  A  LL  A  LE  +N HL    +L LR+
Sbjct:  249 TLEDRLGRWGAGWRPPPLRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDPELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGRCPGLTLAYYRLALCILAARGEHGSRQAKLLLDCAMSLEGAENRHLSAGVDLVLRI 398
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BLAST of mRNA_P-wetherbeei_contig1398.1.2 vs. uniprot
Match: A0A7S2GJR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJR6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.170e-11
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  189 RIRELDV--AIVTAVEPLNRSVAEPSLSDRLMDSVWNPPSLRALPRGGEGFASAWTHFGPLDRFELVKSANRSSNGHGQRLSDTELEWAVLCVEEAEELL 482
            R+R++++   +V     + ++   P L DRL DS++ PP L  L    + ++S W+  G LDRFELVKS+ RS N  G R +++E+EW V+  E AEEL+
Sbjct:   55 RLRQIELLRGVVIREASVGKTPLVPPLDDRLEDSMFQPPPLLPL-HCADKYSSQWSWVGELDRFELVKSSQRSRNIFGHRQTESEIEWIVMSHELAEELM 153
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BLAST of mRNA_P-wetherbeei_contig1398.1.2 vs. uniprot
Match: A0A5A8C6S4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C6S4_CAFRO)

HSP 1 Score: 67.4 bits (163), Expect = 1.310e-9
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 3 
Query:  417 QRLSDTELEWAVLCVEEAEELLQSLRFAEAAAVLERLLERCPSFTLA---YAKLALAVLAARGPAAAD--------DAVALLRRAAFLEPDNEHLRGATELALRLAAQASVPEELLS-ESFPRSMGDLQALDALAR 788
            ++L+  E++ AV  +E+A++  ++  FA A A L R+L  CP+  LA   +  L L   AAR P AA         DA    + A  LEP+NE LR A +L +R+AA A  P+ L    +FP+S GDL  L  LAR
Sbjct:   18 RKLTHDEIDTAVRALEDADKAAEAFDFARARAQLRRVLGICPNLPLALYRWGALELLREAARSPKAASGLAAQRAPDATRAFQAAVKLEPENEALRAAIQLCIRVAAGAPCPDRLFDLAAFPKSPGDLSVLLELAR 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1398.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZF3_ECTSI1.620e-3857.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA32_9PHAE3.850e-3655.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJR6_9STRA2.170e-1140.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A5A8C6S4_CAFRO1.310e-938.97Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1398contigP-wetherbeei_contig1398:2..1547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1106
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003100.1
Cds size1074
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.0953007-UTR-P-wetherbeei_contig1398:1..161683186004.0953007-UTR-P-wetherbeei_contig1398:1..16Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1398 2..16 -
1683186004.124857-UTR-P-wetherbeei_contig1398:1530..15471683186004.124857-UTR-P-wetherbeei_contig1398:1530..1547Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1398 1531..1547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.1031222-CDS-P-wetherbeei_contig1398:16..5721683186004.1031222-CDS-P-wetherbeei_contig1398:16..572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1398 17..572 -
1683186004.1103504-CDS-P-wetherbeei_contig1398:846..9841683186004.1103504-CDS-P-wetherbeei_contig1398:846..984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1398 847..984 -
1683186004.1175985-CDS-P-wetherbeei_contig1398:1150..15301683186004.1175985-CDS-P-wetherbeei_contig1398:1150..1530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1398 1151..1530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1398.1.2prot_P-wetherbeei_contig1398.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1398 17..1530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1398.1.2

>prot_P-wetherbeei_contig1398.1.2 ID=prot_P-wetherbeei_contig1398.1.2|Name=mRNA_P-wetherbeei_contig1398.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
MQRSHEAAVVRIETAVEPLRLRASDDVPTARRRESSGRVLQDATDAMLFL
DSADRRRRIRELDVAIVTAVEPLNRSVAEPSLSDRLMDSVWNPPSLRALP
RGGEGFASAWTHFGPLDRFELVKSANRSSNGHGQRLSDTELEWAVLCVEE
AEELLQSLRFAEAAAVLERLLERCPSFTLAYAKLALAVLAARGPAAADDA
VALLRRAAFLEPDNEHLRGATELALRLAAQASVPEELLSESFPRSMGDLQ
ALDALARLAAVPPSTAAAAAGIGQAAAAVASVAAAAAAAAAAAAAAAAAA
AAAAAAGAAAEARQAAAATQDAPEPVAAPVKVAAATRSEAAATRPPEGAE
PVKGATT*
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mRNA from alignment at P-wetherbeei_contig1398:2..1547-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1398.1.2 ID=mRNA_P-wetherbeei_contig1398.1.2|Name=mRNA_P-wetherbeei_contig1398.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1546bp|location=Sequence derived from alignment at P-wetherbeei_contig1398:2..1547- (Phaeothamnion wetherbeei SAG_119_79)
AAACAAAGACATGCAGCATGCAGCGTTCTCATGAGGCCGCCGTCGTCCGC
ATTGAGACGGCCGTCGAACCGTTGAGACTGCGAGCGAGCGATGACGTGCC
AACCGCTCGAAGAAGAGAAAGCAGTGGGCGCGTGCTTCAGGATGCCACAG
ACGCGATGCTCTTCCTTGACTCCGCGGACCGCCGGCGGCGAATCCGCGAG
CTTGATGTGGCAATCGTTACTGCCGTGGAGCCGCTGAATCGCTCTGTTGC
CGAACCTTCATTGTCCGATCGTCTGATGGACTCGGTTTGGAACCCACCTT
CGCTGCGCGCCCTCCCAAGGGGCGGCGAGGGCTTCGCCTCGGCGTGGACG
CATTTCGGCCCGCTTGACCGATTCGAGCTTGTCAAATCGGCCAATAGGTG
GGCAGCGTCTCCCTCGCTTCCTTCTCTTGCTTGCTTCTGTTTTCCTTCTT
TATCTTCTGCGCCCACCGCACTGGCTTAATTCAAATGTTGCTCCCGCCCT
TTCTGCGTATTCGCTGCTACCGGCGGCCCCGCTGCGACGACGCCGTTTCT
CACGTTAGTCCAGGTCGTCCAACGGACACGGGCAGCGGCTGTCGGACACC
GAGCTGGAATGGGCGGTGCTGTGCGTGGAGGAAGCCGAAGAGCTGCTGCA
GTCGCTGCGCTTCGCCGAAGCCGCCGCAGTCCTGGAGCGTCTGTTGGAGA
GGTGGCAGTTTTTTACGACACAACACATTTTTCCCCTTCCAATTGGAGTG
TGGCCGTCCTAACTCGTCCAAAAACGGCTGATTTGTTTGAGCGAAACTGC
GTGGCGGCGAAACCCTTGTTCCTTTCTCTCTGTCAGTTGCTGGCGGGGCG
CAGATGCAAATTCATGCTTAACGTTTAAACCTCCTTCCCTGTTTACCCTT
CCCTCCTGTCCGTCCCTCTTTCTTTTCCCTTTGAAAACGCAACAACTGCC
GGCGGCATGCGGCACGCCCCACCAGGTGCCCAAGCTTCACGCTGGCTTAC
GCTAAGCTCGCGCTGGCAGTCCTTGCGGCGCGCGGGCCGGCCGCGGCGGA
CGACGCGGTGGCACTGCTGCGGCGGGCGGCGTTCCTGGAGCCGGACAACG
AGCACCTACGGGGCGCGACGGAGCTGGCGCTGCGACTGGCGGCACAGGCG
TCCGTTCCGGAAGAGCTCCTGTCCGAATCCTTTCCAAGATCGATGGGGGA
CCTCCAGGCACTGGACGCGCTGGCGCGGCTCGCGGCGGTGCCGCCTTCGA
CGGCGGCGGCGGCGGCGGGAATCGGACAGGCGGCGGCGGCGGTGGCCTCG
GTGGCAGCTGCGGCAGCGGCAGCAGCAGCTGCGGCAGCGGCAGCAGCAGC
TGCGGCAGCGGCAGCAGCAGCTGCGGGGGCAGCAGCAGAGGCAAGACAGG
CGGCAGCAGCGACACAAGATGCGCCGGAACCGGTTGCAGCACCAGTTAAA
GTCGCAGCAGCGACAAGGTCAGAAGCCGCAGCGACAAGGCCGCCGGAGGG
AGCAGAACCAGTGAAAGGAGCTACTACCTGAACGGCATCGCCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1398:2..1547-

>mRNA_P-wetherbeei_contig1398.1.2 ID=mRNA_P-wetherbeei_contig1398.1.2|Name=mRNA_P-wetherbeei_contig1398.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig1398:2..1547- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGTTCTCATGAGGCCGCCGTCGTCCGCATTGAGACGGCCGTCGA
ACCGTTGAGACTGCGAGCGAGCGATGACGTGCCAACCGCTCGAAGAAGAG
AAAGCAGTGGGCGCGTGCTTCAGGATGCCACAGACGCGATGCTCTTCCTT
GACTCCGCGGACCGCCGGCGGCGAATCCGCGAGCTTGATGTGGCAATCGT
TACTGCCGTGGAGCCGCTGAATCGCTCTGTTGCCGAACCTTCATTGTCCG
ATCGTCTGATGGACTCGGTTTGGAACCCACCTTCGCTGCGCGCCCTCCCA
AGGGGCGGCGAGGGCTTCGCCTCGGCGTGGACGCATTTCGGCCCGCTTGA
CCGATTCGAGCTTGTCAAATCGGCCAATAGGTCGTCCAACGGACACGGGC
AGCGGCTGTCGGACACCGAGCTGGAATGGGCGGTGCTGTGCGTGGAGGAA
GCCGAAGAGCTGCTGCAGTCGCTGCGCTTCGCCGAAGCCGCCGCAGTCCT
GGAGCGTCTGTTGGAGAGGTGCCCAAGCTTCACGCTGGCTTACGCTAAGC
TCGCGCTGGCAGTCCTTGCGGCGCGCGGGCCGGCCGCGGCGGACGACGCG
GTGGCACTGCTGCGGCGGGCGGCGTTCCTGGAGCCGGACAACGAGCACCT
ACGGGGCGCGACGGAGCTGGCGCTGCGACTGGCGGCACAGGCGTCCGTTC
CGGAAGAGCTCCTGTCCGAATCCTTTCCAAGATCGATGGGGGACCTCCAG
GCACTGGACGCGCTGGCGCGGCTCGCGGCGGTGCCGCCTTCGACGGCGGC
GGCGGCGGCGGGAATCGGACAGGCGGCGGCGGCGGTGGCCTCGGTGGCAG
CTGCGGCAGCGGCAGCAGCAGCTGCGGCAGCGGCAGCAGCAGCTGCGGCA
GCGGCAGCAGCAGCTGCGGGGGCAGCAGCAGAGGCAAGACAGGCGGCAGC
AGCGACACAAGATGCGCCGGAACCGGTTGCAGCACCAGTTAAAGTCGCAG
CAGCGACAAGGTCAGAAGCCGCAGCGACAAGGCCGCCGGAGGGAGCAGAA
CCAGTGAAAGGAGCTACTACCTGA
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