mRNA_P-wetherbeei_contig10327.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10327.1.1
Unique NamemRNA_P-wetherbeei_contig10327.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.890e-32
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGV-RTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHS-EAGISTARAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            ++YC+L+  AYHE+PWL++M      TSGCM    + RTY LSS++ V+E NPDEFM P G ++HETRCGSTL ANM+AAVP+NIVH    G+      ++ R V R M P   GHT +FFK Q
Sbjct:  140 VAYCQLDMVAYHESPWLFAMGAFHQRTSGCMDDPSLTRTYRLSSLKRVLEENPDEFMDPTGFIYHETRCGSTLSANMIAAVPSNIVHRCPDGLRE----ELVRTVFRLMGPVQDGHTDLFFKFQ 259          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.580e-21
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGIST-----------ARAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            I++C +    Y E PW Y M+    + SGC     +R++ LS +R  +  +P+EF+ P G V+HETR GSTLVANMLA VP+N+V SE+ ++             + + + R +M  +     GH H+FFK Q
Sbjct:   53 ITFCLMRMAEYQETPWKYPMAVMLQKKSGCSKAENLRSFHLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSESNMAEDPVRRCSHCTEMQKVTLLREIMTLLGNGRNGHKHLFFKFQ 185          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.540e-20
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGIS---TARAIDVTRL----VMRAMAPRLG----GHTHVFFKLQ 366
            I++C +    Y E PW Y M+    + S C     +R++ LS +R  +  +P+EF+ P G V+HETR GSTLVANMLA VP+N+V SE  ++     R  D T +    ++R +   LG    GH H+FFK Q
Sbjct:  177 ITFCLMRMAEYQETPWKYPMAVMLQKKSECSKAENLRSFRLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSENNMAEDPVRRCSDCTEMQKVALLREIMTLLGNGRNGHEHLFFKFQ 309          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A836CJX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.680e-17
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGI---------STARAIDVTRLVMRAMAPRLGGHTHVFFKL 363
            +S+C +N   Y   PW   M +     S C  R   R Y+L+ + A  + NP+ +++P+G + HETRCGSTLVANM+A +PT ++ SE+ +         S    +   R + RA+      H   FFKL
Sbjct:   73 VSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKL 202          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A7S2SP01_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP01_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-15
Identity = 52/126 (41.27%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSE----AGISTARAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            ++ C+LN   Y   P    M +  +  S C G    RT  LS+++  +EA+PD  + P G VFHETRCGSTLVA+MLA+ P ++V SE    A ++      V R VM  M  R   HT  FFK Q
Sbjct:  135 VTLCKLNYDKYWREPSSLPMFKHLVGASNCRG-SNYRTERLSTLKKEMEADPDGTLQPTGFVFHETRCGSTLVADMLASHPHHLVFSESSPPASVAATGRASVLRDVMLLMC-RSHYHTRCFFKFQ 258          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 78.6 bits (192), Expect = 1.610e-14
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGISTARAI----------DVTRLVMRAMAPRLGGHTHVFFKLQ 366
            +  CRLN  AY   P+ Y M +  L  S C  +G   T TL+ +R  I     E + PAG VFHE+R GSTL+AN+LAA P N+V SE+    A A+          ++ R+++RAM+  +  H  +FFK Q
Sbjct:   84 VELCRLNIEAYTAEPYKYPMFKDLLRVSNC--KGNTMTVTLNDLRFGIP----ETLDPAGFVFHESRVGSTLIANILAADPDNLVFSESAPPPAIALHCPAPLPEKAEMMRVLLRAMSNSVR-HKRLFFKFQ 208          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.110e-14
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGC--MGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAG-----------ISTARAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            +  C++N  +Y  APWL  M       SGC  + R  V+   +S+++ ++E +      P G +FHETRCGSTLVANMLA+V TN++ SE+                + +   R++M AM  R   H H +FK Q
Sbjct:  215 VKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTLKRLLEESTVPIPPPTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCPKCHKEQIVPWLRVIMDAMT-RSARHKHFYFKFQ 348          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A6H5JFB5_9PHAE (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFB5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.670e-14
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   10 CRLNATAYHEAPWLYSMSRQWLETSG-CMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEA-------------GISTARAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            C L+   Y   P+ Y M +  ++ SG C G     T ++S ++  I+ANP+ ++ P G VFH +RCGSTL AN++ + P NIV+SE+             G +  + +   R V+ AM  +   H H+FFK Q
Sbjct:   99 CSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTAT-SISKLQDEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMG-KTSFHKHMFFKFQ 229          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A7S2GE74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE74_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.930e-13
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGISTA------RAIDVTRLVMRAMAPRLGGHTHVFFKLQ 366
            ++ C+L+   Y   P    M R  +  S C G+  V+   LS ++A +EA+PD  + P G VFHE+RCGSTLVA+ML +   ++  SE+    A      R + + R VM  M  R   HT  FFK Q
Sbjct:  121 VTLCKLDYDTYWRNPDKLPMFRDLVAASKCRGKN-VKEEKLSVLKAEMEADPDGTLQPTGFVFHESRCGSTLVADMLGSQAHHLTFSESSPPAAIAGKGERHVGILRTVMLLMC-RSSYHTRCFFKFQ 246          
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.120e-12
Identity = 53/134 (39.55%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEANPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAG-----------ISTARAIDVTRLVMRAM-APRLGGHTHVFFKLQ 366
            +S C+L    Y   P    M R     S C GRG  R  TL+++   +     + + P+G VFHE+R GSTLVANMLAAVPTNIV+SE+             S  R  D+ + ++  M A     HTH+FFK Q
Sbjct:  124 VSLCKLAFDTYWRDPSKTPMFRDLASASRC-GRG--RAGTLNTLYEDMRKKNIKPVKPSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHCRSCSKQRKTDILQKLIALMGASPTNYHTHLFFKFQ 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Z3_ECTSI3.890e-3252.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7C8_ECTSI4.580e-2137.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3E4_9PHAE3.540e-2039.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJX0_9STRA4.680e-1734.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SP01_9STRA1.680e-1541.27Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F2UI36_SALR51.610e-1439.39JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
A0A6H5KRY1_9PHAE2.110e-1435.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFB5_9PHAE7.670e-1434.59JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2GE74_9STRA5.930e-1337.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZKE9_9STRA2.120e-1239.55Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10327contigP-wetherbeei_contig10327:99..918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004991157.1
PFAMsCupin_8
Model size366
Max annot lvl2759|Eukaryota
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.64e-15
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_009540.1
EC1.14.11.27
DescriptiontRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
Cds size366
COG categoryIQ
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.879952-CDS-P-wetherbeei_contig10327:98..1971683185863.879952-CDS-P-wetherbeei_contig10327:98..197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10327 99..197 -
1683185863.898762-CDS-P-wetherbeei_contig10327:651..9181683185863.898762-CDS-P-wetherbeei_contig10327:651..918Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10327 652..918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10327.1.1prot_P-wetherbeei_contig10327.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10327 99..918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10327.1.1

>prot_P-wetherbeei_contig10327.1.1 ID=prot_P-wetherbeei_contig10327.1.1|Name=mRNA_P-wetherbeei_contig10327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
ISYCRLNATAYHEAPWLYSMSRQWLETSGCMGRGGVRTYTLSSVRAVIEA
NPDEFMAPAGLVFHETRCGSTLVANMLAAVPTNIVHSEAGISTARAIDVT
RLVMRAMAPRLGGHTHVFFKLQ
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mRNA from alignment at P-wetherbeei_contig10327:99..918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10327.1.1 ID=mRNA_P-wetherbeei_contig10327.1.1|Name=mRNA_P-wetherbeei_contig10327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=820bp|location=Sequence derived from alignment at P-wetherbeei_contig10327:99..918- (Phaeothamnion wetherbeei SAG_119_79)
ATCTCCTACTGCCGCCTCAACGCGACGGCCTACCACGAGGCGCCCTGGCT TTACTCCATGTCGCGGCAGTGGCTCGAGACATCGGGCTGCATGGGCCGCG GTGGCGTACGCACCTACACGCTGTCCTCCGTCCGCGCCGTCATCGAGGCC AACCCCGACGAGTTCATGGCCCCCGCCGGGCTTGTGTTCCACGAGACGCG CTGCGGATCGACGCTGGTGGCCAACATGCTGGCGGCAGTGCCGACCAACA TTGTGCACAGTGAGGCCGTCGCGACGATCCAGGTGCGGCTCTACGGGATT TTCTGCAGAGAAGAGGGAAGCAATCCGGGAAGCAATCCGTTCTAGAGACA CTTTGCAATACCTTCCCTGTCTTCTTCTTCTCTGGTTTGCGGAGGGCAAA TTATCGTTGCGGCCTGCCTTTCGTCATGATGACCTAACATAGCTTGTCCT CTGTTCTTATGCTTGGAATGCTGCACTCATGCAATGCGATCGCTCCTGCC GTCGCCGCCTCTGGCCCTTTTTCGCACAGCCGAAGGCACCCGTGCTGATT TGCTGTTTCCATCTAATGCTCCCTTCTTGCGCTCATCTCCGGTAATCGCC GCCATCGCCACCATAACCGTTCTTATGATAAGAAGCAGCAATATCATAAC CGCCAGAATAACCGAAATTCCTTTTGCCAAAAACGAAACGGTTGAAACTT GAACAGGGGCTGGCGGCGCAGGGCATCTCTACTGCGCGGGCGATCGACGT GACACGGCTCGTGATGCGGGCGATGGCGCCGCGTCTCGGCGGCCACACTC ACGTCTTTTTCAAGCTGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10327:99..918-

>mRNA_P-wetherbeei_contig10327.1.1 ID=mRNA_P-wetherbeei_contig10327.1.1|Name=mRNA_P-wetherbeei_contig10327.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig10327:99..918- (Phaeothamnion wetherbeei SAG_119_79)
ATCTCCTACTGCCGCCTCAACGCGACGGCCTACCACGAGGCGCCCTGGCT
TTACTCCATGTCGCGGCAGTGGCTCGAGACATCGGGCTGCATGGGCCGCG
GTGGCGTACGCACCTACACGCTGTCCTCCGTCCGCGCCGTCATCGAGGCC
AACCCCGACGAGTTCATGGCCCCCGCCGGGCTTGTGTTCCACGAGACGCG
CTGCGGATCGACGCTGGTGGCCAACATGCTGGCGGCAGTGCCGACCAACA
TTGTGCACAGTGAGGCCGGCATCTCTACTGCGCGGGCGATCGACGTGACA
CGGCTCGTGATGCGGGCGATGGCGCCGCGTCTCGGCGGCCACACTCACGT
CTTTTTCAAGCTGCAG
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