mRNA_P-wetherbeei_contig1397.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1397.3.1
Unique NamemRNA_P-wetherbeei_contig1397.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1397.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1397contigP-wetherbeei_contig1397:4487..5015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.6857276-CDS-P-wetherbeei_contig1397:4486..48281683186003.6857276-CDS-P-wetherbeei_contig1397:4486..4828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 4487..4828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.696784-UTR-P-wetherbeei_contig1397:4828..50151683186003.696784-UTR-P-wetherbeei_contig1397:4828..5015Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1397 4829..5015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1397.3.1prot_P-wetherbeei_contig1397.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1397 4487..4828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1397.3.1

>prot_P-wetherbeei_contig1397.3.1 ID=prot_P-wetherbeei_contig1397.3.1|Name=mRNA_P-wetherbeei_contig1397.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MGPRAVCVDVPVRRKSSKIVLRTPIVTSPQPFFFAADDCGSRPVNGASSL
MPLSPSLAAKYRIARKEEVLPGCGVSPGSAPGQHLKRAISSLFRPRGNPE
PSTCEPTRTSSLRQ
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mRNA from alignment at P-wetherbeei_contig1397:4487..5015-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1397.3.1 ID=mRNA_P-wetherbeei_contig1397.3.1|Name=mRNA_P-wetherbeei_contig1397.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=529bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:4487..5015- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGATCGCGGAGGATACACATTTCAATTTCTCGCAAAAAGGGTGCAA
TCACTCCGAAAGTGCCGTTGCAGCAGTTGCGCACGCAAGGCAGTTTAGAG
TTATTTAACTCCCAGCTTTTTCGAGCGAGAAATAGACTCATTTTCACCAA
GACCTGCTAAGAAGGAAAATACAAGCTCGTGGACGCCATGGGGCCTCGCG
CTGTGTGCGTCGATGTCCCAGTCAGGCGCAAGTCGTCCAAGATCGTTCTT
CGGACTCCAATCGTGACATCGCCGCAACCCTTCTTCTTTGCGGCCGACGA
CTGTGGCAGCAGGCCCGTAAACGGTGCGAGCAGCCTCATGCCGCTCTCTC
CTTCACTCGCCGCCAAGTATCGCATCGCTCGGAAAGAGGAGGTTCTGCCC
GGGTGCGGCGTCTCTCCTGGGAGCGCGCCGGGGCAGCATCTGAAGCGCGC
CATCTCCTCCCTCTTCCGTCCGCGCGGCAATCCCGAGCCTTCAACGTGCG
AGCCGACGCGGACATCCTCGCTCCGTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1397:4487..5015-

>mRNA_P-wetherbeei_contig1397.3.1 ID=mRNA_P-wetherbeei_contig1397.3.1|Name=mRNA_P-wetherbeei_contig1397.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:4487..5015- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCTCGCGCTGTGTGCGTCGATGTCCCAGTCAGGCGCAAGTCGTC
CAAGATCGTTCTTCGGACTCCAATCGTGACATCGCCGCAACCCTTCTTCT
TTGCGGCCGACGACTGTGGCAGCAGGCCCGTAAACGGTGCGAGCAGCCTC
ATGCCGCTCTCTCCTTCACTCGCCGCCAAGTATCGCATCGCTCGGAAAGA
GGAGGTTCTGCCCGGGTGCGGCGTCTCTCCTGGGAGCGCGCCGGGGCAGC
ATCTGAAGCGCGCCATCTCCTCCCTCTTCCGTCCGCGCGGCAATCCCGAG
CCTTCAACGTGCGAGCCGACGCGGACATCCTCGCTCCGTCAG
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