mRNA_P-wetherbeei_contig1397.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1397.2.1
Unique NamemRNA_P-wetherbeei_contig1397.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1397.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1397contigP-wetherbeei_contig1397:1845..4405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1968
Hectar predicted targeting categoryother localisation
Exons3
Cds size1968
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.6327486-CDS-P-wetherbeei_contig1397:1844..34581683186003.6327486-CDS-P-wetherbeei_contig1397:1844..3458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 1845..3458 -
1683186003.6409142-CDS-P-wetherbeei_contig1397:3913..41961683186003.6409142-CDS-P-wetherbeei_contig1397:3913..4196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 3914..4196 -
1683186003.655672-CDS-P-wetherbeei_contig1397:4334..44051683186003.655672-CDS-P-wetherbeei_contig1397:4334..4405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 4335..4405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1397.2.1prot_P-wetherbeei_contig1397.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1397 1845..4405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1397.2.1

>prot_P-wetherbeei_contig1397.2.1 ID=prot_P-wetherbeei_contig1397.2.1|Name=mRNA_P-wetherbeei_contig1397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=656bp
PPPAKSRKAATSTMFKLDHPLLHRVPSTASGLSIVFAFRDSSGGSAVSNS
GGGGGGSDDGAATRRLFEEFEALSDRLYATRGSLYGIRLGCTGDVGAPGS
FAAARGLSFPVYDDPTDQLMLQLTAILGLDWSRVASSDVPRTPPLVPRSP
HGATDFAAAVVYDGRVVYQWSPEDSSAAASAAAATAASALDIPVTAPAAT
AAAADIFYDVPAAAVAAAAPISGCSLDAAAFAATCAVPAGFDLRSGFNTS
SWGRLGPGGSGCHSACSVHNDDYSIDEDGCRRGRAGNDNGGVDGGSEAGS
HESGAWRDTWTAGAGIGLPQEKAGAEDDAVAGGCCDDDVSGVDIGSEAGN
AHDGFGENSEDDNIFSSDDKEEDADWTAPASPAEEADNGDAAIFAAAAAT
AAAAAATTTIAAASAAADARAAAAAVAAVANVPSPTPATAPVLASTPVGP
TAAAPLSYRTGVLWAAVRMVIATTTKDGRFSGGAGDGPLPPLKTSAKESK
LQPAAAIKKTPTAIRKGNSAGMRKVGGGLSQKDISLGNSLGSKASAGGSH
GAVGGKGHHHRPAHSGFGGGCDGYAGVDAAQDRTYDGDVEEAETTWEDSN
HRGAFRACGRTGSSGNRDRSGNGLFGGARGRSSSSGGLMGGGGGAVGSGG
ARGRSS
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mRNA from alignment at P-wetherbeei_contig1397:1845..4405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1397.2.1 ID=mRNA_P-wetherbeei_contig1397.2.1|Name=mRNA_P-wetherbeei_contig1397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2561bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:1845..4405- (Phaeothamnion wetherbeei SAG_119_79)
CCGCCACCGGCGAAGAGCCGCAAGGCAGCCACCTCCACCATGTTCAAACT
GGATCACCCCCTTCTCCACCGGTAAGAGGACGATTGGGGGGTTTTAAGTA
TCCCTCAGCACTCTCTGTACTCTCCAAATGTATCCTCACTCCGCTCCTTG
ACACATCATTTTTTGTTTCCTTTCCTTTCCATGGCCTATTCGTCCGGTCC
GGTGCGCAGGGTGCCCTCCACGGCCAGCGGCCTGTCCATCGTCTTCGCCT
TCCGCGACAGCTCCGGCGGCAGCGCCGTATCCAACAGCGGCGGCGGTGGC
GGCGGCAGCGACGACGGCGCCGCCACCCGCCGCCTGTTTGAGGAGTTTGA
GGCGCTGAGCGACCGCCTTTACGCCACCCGCGGCAGCCTCTACGGGATTC
GCCTCGGCTGCACGGGTGACGTCGGCGCGCCCGGCAGCTTTGCGGCGGCG
CGCGGCCTCAGCTTCCCCGTATATGACGACCCCACTGACCAGGTACTTCG
CATATATACATGTATTCATAATGCCAGCATAGCGCCATGTATCTTGGAGC
TCGAGCAGTAAAGCTGACGAAAAGGGTTTGTGAAGGATGAACTGGCCGGT
TGGGTGTTCGTTCGGTCCTCAATGCTCTTTGGTTATAAGAATAACCTTAA
TCTTACCTCGTATACCCGCGGCGCTTCTCGCTGCCAGCCCGCTCCTCAAC
TTTACCTGCTTAGCTCAACTCTCAAAGGCAATCCATTGCCTTCTCTTTCC
GGCCCGCTTGCTTTCTGCTACCCTCCTTACCTGACTTGACCTGCTCGCCC
ATCCGATGGCGCGCTGCATCCCCATGCGAACCCTCCGCCCCGCTGTCTCA
TTGCCTGTCTCTCCCTTTCTCTTCCCGCATCTCTCTATTTGTCCCTTCCT
GCGACTGCGGCTCCTCCCTCCTTCTTCTCATCACACCAAAAACGCAGCTC
ATGCTCCAGCTGACGGCCATCCTCGGCCTAGACTGGTCGCGAGTCGCATC
GTCAGACGTGCCGCGGACGCCGCCGCTCGTGCCCCGCTCCCCGCACGGCG
CCACCGACTTCGCCGCCGCCGTCGTGTACGACGGCAGGGTCGTCTACCAG
TGGTCCCCCGAGGACTCCTCCGCCGCCGCCAGTGCTGCTGCCGCCACTGC
CGCGTCGGCCCTCGACATTCCGGTTACCGCCCCTGCCGCAACTGCCGCCG
CCGCCGACATTTTCTACGATGTCCCGGCGGCGGCGGTGGCGGCGGCAGCG
CCGATCTCCGGCTGCAGTCTCGATGCTGCTGCCTTTGCTGCCACTTGCGC
CGTCCCCGCCGGGTTTGACCTTCGCAGCGGTTTCAACACAAGCAGCTGGG
GCAGGCTGGGACCCGGCGGCAGCGGCTGCCACTCCGCTTGCAGCGTCCAC
AACGACGACTACAGCATTGATGAGGACGGCTGCCGCCGCGGCCGCGCTGG
AAATGACAACGGCGGCGTCGACGGAGGCAGCGAGGCAGGCAGCCACGAGA
GCGGCGCGTGGCGTGACACCTGGACGGCCGGCGCCGGCATTGGGCTCCCG
CAGGAAAAGGCGGGCGCTGAAGACGACGCTGTTGCCGGCGGCTGCTGCGA
TGACGACGTCTCCGGCGTCGACATCGGTAGCGAAGCCGGCAACGCCCACG
ATGGTTTCGGCGAAAACAGCGAAGACGATAATATTTTCAGCAGCGACGAC
AAGGAGGAAGACGCCGACTGGACGGCACCGGCGTCGCCGGCGGAAGAAGC
GGACAACGGCGACGCCGCGATCTTCGCGGCAGCAGCCGCGACGGCCGCGG
CCGCCGCCGCCACCACTACCATCGCAGCCGCCTCGGCCGCCGCCGATGCA
AGAGCGGCCGCCGCTGCGGTTGCGGCCGTTGCGAACGTCCCCAGCCCCAC
TCCGGCTACCGCGCCCGTGCTGGCTTCGACCCCGGTGGGTCCGACCGCCG
CCGCGCCGCTGTCGTACCGCACCGGCGTGCTCTGGGCGGCCGTTCGGATG
GTGATAGCGACGACGACCAAGGACGGCAGATTCAGCGGCGGGGCGGGTGA
CGGGCCGCTGCCGCCGCTGAAGACGTCCGCAAAGGAGTCGAAGCTCCAGC
CGGCGGCAGCCATCAAGAAGACACCAACGGCGATCAGGAAGGGTAATAGT
GCTGGTATGCGCAAAGTTGGCGGCGGGCTGTCGCAGAAGGACATCAGCCT
AGGAAACAGCCTCGGCAGCAAAGCCAGCGCCGGCGGCAGTCACGGCGCGG
TCGGCGGCAAGGGGCATCACCACCGACCAGCGCACAGCGGCTTCGGCGGC
GGTTGCGACGGTTACGCTGGCGTCGATGCGGCCCAGGACCGCACGTATGA
TGGGGATGTCGAAGAGGCGGAAACGACATGGGAGGACAGCAACCACCGCG
GCGCATTCCGTGCCTGCGGCCGCACCGGCAGCAGCGGTAACCGTGACCGT
AGCGGCAACGGCCTTTTCGGCGGCGCCCGCGGCCGCAGCAGCAGCAGTGG
CGGCCTAATGGGCGGTGGCGGCGGCGCCGTGGGCAGCGGCGGCGCCCGTG
GCCGCAGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1397:1845..4405-

>mRNA_P-wetherbeei_contig1397.2.1 ID=mRNA_P-wetherbeei_contig1397.2.1|Name=mRNA_P-wetherbeei_contig1397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1968bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:1845..4405- (Phaeothamnion wetherbeei SAG_119_79)
CCGCCACCGGCGAAGAGCCGCAAGGCAGCCACCTCCACCATGTTCAAACT
GGATCACCCCCTTCTCCACCGGGTGCCCTCCACGGCCAGCGGCCTGTCCA
TCGTCTTCGCCTTCCGCGACAGCTCCGGCGGCAGCGCCGTATCCAACAGC
GGCGGCGGTGGCGGCGGCAGCGACGACGGCGCCGCCACCCGCCGCCTGTT
TGAGGAGTTTGAGGCGCTGAGCGACCGCCTTTACGCCACCCGCGGCAGCC
TCTACGGGATTCGCCTCGGCTGCACGGGTGACGTCGGCGCGCCCGGCAGC
TTTGCGGCGGCGCGCGGCCTCAGCTTCCCCGTATATGACGACCCCACTGA
CCAGCTCATGCTCCAGCTGACGGCCATCCTCGGCCTAGACTGGTCGCGAG
TCGCATCGTCAGACGTGCCGCGGACGCCGCCGCTCGTGCCCCGCTCCCCG
CACGGCGCCACCGACTTCGCCGCCGCCGTCGTGTACGACGGCAGGGTCGT
CTACCAGTGGTCCCCCGAGGACTCCTCCGCCGCCGCCAGTGCTGCTGCCG
CCACTGCCGCGTCGGCCCTCGACATTCCGGTTACCGCCCCTGCCGCAACT
GCCGCCGCCGCCGACATTTTCTACGATGTCCCGGCGGCGGCGGTGGCGGC
GGCAGCGCCGATCTCCGGCTGCAGTCTCGATGCTGCTGCCTTTGCTGCCA
CTTGCGCCGTCCCCGCCGGGTTTGACCTTCGCAGCGGTTTCAACACAAGC
AGCTGGGGCAGGCTGGGACCCGGCGGCAGCGGCTGCCACTCCGCTTGCAG
CGTCCACAACGACGACTACAGCATTGATGAGGACGGCTGCCGCCGCGGCC
GCGCTGGAAATGACAACGGCGGCGTCGACGGAGGCAGCGAGGCAGGCAGC
CACGAGAGCGGCGCGTGGCGTGACACCTGGACGGCCGGCGCCGGCATTGG
GCTCCCGCAGGAAAAGGCGGGCGCTGAAGACGACGCTGTTGCCGGCGGCT
GCTGCGATGACGACGTCTCCGGCGTCGACATCGGTAGCGAAGCCGGCAAC
GCCCACGATGGTTTCGGCGAAAACAGCGAAGACGATAATATTTTCAGCAG
CGACGACAAGGAGGAAGACGCCGACTGGACGGCACCGGCGTCGCCGGCGG
AAGAAGCGGACAACGGCGACGCCGCGATCTTCGCGGCAGCAGCCGCGACG
GCCGCGGCCGCCGCCGCCACCACTACCATCGCAGCCGCCTCGGCCGCCGC
CGATGCAAGAGCGGCCGCCGCTGCGGTTGCGGCCGTTGCGAACGTCCCCA
GCCCCACTCCGGCTACCGCGCCCGTGCTGGCTTCGACCCCGGTGGGTCCG
ACCGCCGCCGCGCCGCTGTCGTACCGCACCGGCGTGCTCTGGGCGGCCGT
TCGGATGGTGATAGCGACGACGACCAAGGACGGCAGATTCAGCGGCGGGG
CGGGTGACGGGCCGCTGCCGCCGCTGAAGACGTCCGCAAAGGAGTCGAAG
CTCCAGCCGGCGGCAGCCATCAAGAAGACACCAACGGCGATCAGGAAGGG
TAATAGTGCTGGTATGCGCAAAGTTGGCGGCGGGCTGTCGCAGAAGGACA
TCAGCCTAGGAAACAGCCTCGGCAGCAAAGCCAGCGCCGGCGGCAGTCAC
GGCGCGGTCGGCGGCAAGGGGCATCACCACCGACCAGCGCACAGCGGCTT
CGGCGGCGGTTGCGACGGTTACGCTGGCGTCGATGCGGCCCAGGACCGCA
CGTATGATGGGGATGTCGAAGAGGCGGAAACGACATGGGAGGACAGCAAC
CACCGCGGCGCATTCCGTGCCTGCGGCCGCACCGGCAGCAGCGGTAACCG
TGACCGTAGCGGCAACGGCCTTTTCGGCGGCGCCCGCGGCCGCAGCAGCA
GCAGTGGCGGCCTAATGGGCGGTGGCGGCGGCGCCGTGGGCAGCGGCGGC
GCCCGTGGCCGCAGCAGC
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