mRNA_P-wetherbeei_contig13962.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13962.1.1
Unique NamemRNA_P-wetherbeei_contig13962.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13962contigP-wetherbeei_contig13962:654..1686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size456
Hectar predicted targeting categoryother localisation
Exons4
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.5028524-CDS-P-wetherbeei_contig13962:653..7011683186003.5028524-CDS-P-wetherbeei_contig13962:653..701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13962 654..701 +
1683186003.512775-CDS-P-wetherbeei_contig13962:952..12461683186003.512775-CDS-P-wetherbeei_contig13962:952..1246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13962 953..1246 +
1683186003.522168-CDS-P-wetherbeei_contig13962:1454..15021683186003.522168-CDS-P-wetherbeei_contig13962:1454..1502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13962 1455..1502 +
1683186003.5311284-CDS-P-wetherbeei_contig13962:1621..16841683186003.5311284-CDS-P-wetherbeei_contig13962:1621..1684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13962 1622..1684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13962.1.1prot_P-wetherbeei_contig13962.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13962 654..1684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13962.1.1

>prot_P-wetherbeei_contig13962.1.1 ID=prot_P-wetherbeei_contig13962.1.1|Name=mRNA_P-wetherbeei_contig13962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
VNGDHRKFQQLVREAQAKYLDRSDAAGSGTTAASVAAAASDSRRLSPLLQ
SHQRALDRDMHELERTRGIVDKHRTDTEEALVRRHGVERKRLETFVASVT
HRYQFAMGPTARQEVLGRIWAFFFGDPFYTMIFGGTQYVSPLDGAADTLV
Q
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mRNA from alignment at P-wetherbeei_contig13962:654..1686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13962.1.1 ID=mRNA_P-wetherbeei_contig13962.1.1|Name=mRNA_P-wetherbeei_contig13962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1033bp|location=Sequence derived from alignment at P-wetherbeei_contig13962:654..1686+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAACGGCGACCACCGCAAGTTCCAACAACTCGTCCGCGAGGCGCAGGT
CAGTGGGTCTGGTTCGGTGGGAAGAGCGGGGGCAGAAACAAGGGCTTTGT
CGGCAGCGCTAACGGTTGGCGGGCAAACGTTTCCTTTCCCAGCGGTAGAA
CGGAAGGATTGGTTTACTCTTCCTTCCTCCTGTCGACTTTCACCTCTAAG
CGTCGCTAGTCGCTCACGCTGGTCCAAACTAGAAATCAAGCACCAAGAAC
CGCCTTCTAAAACCGCTCCTTGAAACTGTTTTCTGGAACGCGAGCGAAGG
CGAAGTATCTTGACCGGAGCGATGCAGCCGGCAGCGGCACCACGGCGGCG
TCGGTCGCCGCCGCCGCCAGCGACAGCCGCCGCCTCTCGCCGCTGCTGCA
AAGCCACCAGCGCGCCCTCGACCGCGATATGCACGAGCTGGAACGGACGC
GTGGTATCGTAGATAAGCACCGGACGGACACGGAGGAGGCCCTGGTGCGG
CGGCACGGTGTGGAGCGGAAGCGGCTGGAGACGTTCGTGGCTAGCGTCAC
CCACCGCTACCAGTTTGCGATGGGCCCCACCGCCCGCCAGGAGGTAAGCG
ATTCTGGGATTTGTGACGTTTGCTGCTTTCTGCGCAGTAATTCTTCCTGC
TGTCTGTGGAGTCGATATTTACTGCCTACCTCGGCATGACGATTTATTTA
CTTTTACTTTCACCCTCCTTGTGATTGCTTCCTGCTGCAGCTGCCATCCG
CCGTCGCCGCTGTCTTAACCCCCGCCGCTGCTGGCACTTGTCTCGCCGCA
GGTCCTAGGACGCATCTGGGCATTTTTTTTCGGAGATCCCTTTTACACGG
TGAGTGGTCCGGCGACTCCATCTAATGTCCATTCCCTATCGAGAAGGCAT
CGAAGGATCGCTGGAGACGATGCCTTAATGATTTATTCCGATGAAACCTA
TCGCTTTCCACCGTCCAGATGATTTTTGGGGGCACGCAATACGTATCGCC
GCTCGACGGAGCCGCCGACACGCTGGTACAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13962:654..1686+

>mRNA_P-wetherbeei_contig13962.1.1 ID=mRNA_P-wetherbeei_contig13962.1.1|Name=mRNA_P-wetherbeei_contig13962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig13962:654..1686+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAACGGCGACCACCGCAAGTTCCAACAACTCGTCCGCGAGGCGCAGGC
GAAGTATCTTGACCGGAGCGATGCAGCCGGCAGCGGCACCACGGCGGCGT
CGGTCGCCGCCGCCGCCAGCGACAGCCGCCGCCTCTCGCCGCTGCTGCAA
AGCCACCAGCGCGCCCTCGACCGCGATATGCACGAGCTGGAACGGACGCG
TGGTATCGTAGATAAGCACCGGACGGACACGGAGGAGGCCCTGGTGCGGC
GGCACGGTGTGGAGCGGAAGCGGCTGGAGACGTTCGTGGCTAGCGTCACC
CACCGCTACCAGTTTGCGATGGGCCCCACCGCCCGCCAGGAGGTCCTAGG
ACGCATCTGGGCATTTTTTTTCGGAGATCCCTTTTACACGATGATTTTTG
GGGGCACGCAATACGTATCGCCGCTCGACGGAGCCGCCGACACGCTGGTA
CAG
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