mRNA_P-wetherbeei_contig10325.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10325.1.1
Unique NamemRNA_P-wetherbeei_contig10325.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10325.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10325contigP-wetherbeei_contig10325:365..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1322
Hectar predicted targeting categoryother localisation
Exons1
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.832256-CDS-P-wetherbeei_contig10325:364..10451683185863.832256-CDS-P-wetherbeei_contig10325:364..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10325 365..1045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.8450007-UTR-P-wetherbeei_contig10325:1045..16861683185863.8450007-UTR-P-wetherbeei_contig10325:1045..1686Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10325 1046..1686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10325.1.1prot_P-wetherbeei_contig10325.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10325 365..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10325.1.1

>prot_P-wetherbeei_contig10325.1.1 ID=prot_P-wetherbeei_contig10325.1.1|Name=mRNA_P-wetherbeei_contig10325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MVRASLAAHIAFFTDDTKPSRLVCHFPRGVWAIRPSLDATTSFRAAAGSA
ASRLTGVSPLSSARWTSTPSCPQHRPRARAPRTLPCQAASAAAAAAAMVA
TSYVLAAAATTCLRWRSHFDSCHHHRRSQRRACRSAPPFARRRRRRAWLE
SLGTRPTRTSHVSAHLMASFPTGRGLATPAASAAAAAAAAGRACVAMQGA
SRVAQKPATPALAATADPDGRAGTAGA
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mRNA from alignment at P-wetherbeei_contig10325:365..1686-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10325.1.1 ID=mRNA_P-wetherbeei_contig10325.1.1|Name=mRNA_P-wetherbeei_contig10325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1322bp|location=Sequence derived from alignment at P-wetherbeei_contig10325:365..1686- (Phaeothamnion wetherbeei SAG_119_79)
TGAGGCGGGCGATGCGACGGCGGCGGGATCTGGCAGTAGCGGCGGCTGAG
GAGGAAGAGCTTGATCGGCACGTTTTGGGATAGGACGTTGTCCAGAAGCC
TGCGGTGGCTGGCGAGACGGTTGCGGACCTGCTGCGTCTCGACGGCTAGA
TGGCGGCATCAGTTTCTGCACTCGACCCTCACGTAAAACGCTCAACCAGG
AGCTGTAAACCCCCCCCAAAACGACACACATAACCCCAAAAAAGATCACA
CGCTGAAGATTGACAAGCGGGTATTCTTTTTTTCGTCTTTCGTGTGTGTA
TGCAATCACACATCAGAAAAACATGGGCGTTAGGGAGGGGGGCAATCGAA
GGGTTATCTCCTTCGCCTACCAAATTCCTTTCATGCACCTTCAGAGCTTC
CGGCGGTTACCGGCCCTAACTTTTGTTGTTTTTCAAGAAGCCCGTTCCTT
CTAGACCACTGTCATGGCAAACGAAAATGGGAGTAGGAGGCGCCAAAGAA
AAAGAACAAAGAGGAACCAAGTTATCAGTCCTTGGATGCAGGTGTTCGTT
GACCGACGTCTTCCTGTCGAGAGTGAGCTCTAAACGAGACACGGAGCGTT
CGCCCCTCTTGTATTGCTGACATTGAGCTGTCCAGCTGTCCATGGTACGG
GCTAGCCTGGCGGCCCACATTGCCTTTTTCACGGACGATACAAAACCATC
CAGGTTGGTTTGCCACTTTCCTCGAGGCGTTTGGGCGATTCGTCCCTCTC
TCGACGCAACCACCTCGTTTCGCGCCGCAGCGGGAAGCGCGGCATCGCGG
CTTACGGGCGTGTCTCCCTTGAGTAGCGCCAGATGGACATCAACGCCCTC
CTGTCCACAGCATCGTCCCCGAGCAAGGGCGCCCCGCACGCTTCCTTGCC
AGGCAGCTTCGGCGGCGGCGGCGGCGGCGGCGATGGTGGCGACGAGCTAT
GTTTTGGCGGCGGCAGCGACGACGTGCCTGCGATGGAGGAGCCATTTCGA
TTCCTGCCACCACCACCGACGCTCCCAACGCCGCGCCTGCCGCTCCGCGC
CACCCTTTGCCCGCCGCCGCCGCCGGCGAGCCTGGCTGGAATCATTGGGT
ACGCGGCCGACGCGGACGTCGCATGTCTCGGCCCACTTGATGGCCTCCTT
TCCAACAGGCAGGGGCCTGGCAACACCAGCGGCTTCGGCGGCGGCGGCGG
CTGCGGCAGCGGGGAGGGCGTGCGTGGCGATGCAGGGAGCGAGTCGAGTG
GCGCAGAAGCCAGCGACTCCGGCTCTGGCAGCGACCGCCGATCCGGACGG
CAGGGCAGGAACAGCAGGAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10325:365..1686-

>mRNA_P-wetherbeei_contig10325.1.1 ID=mRNA_P-wetherbeei_contig10325.1.1|Name=mRNA_P-wetherbeei_contig10325.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig10325:365..1686- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTACGGGCTAGCCTGGCGGCCCACATTGCCTTTTTCACGGACGATAC
AAAACCATCCAGGTTGGTTTGCCACTTTCCTCGAGGCGTTTGGGCGATTC
GTCCCTCTCTCGACGCAACCACCTCGTTTCGCGCCGCAGCGGGAAGCGCG
GCATCGCGGCTTACGGGCGTGTCTCCCTTGAGTAGCGCCAGATGGACATC
AACGCCCTCCTGTCCACAGCATCGTCCCCGAGCAAGGGCGCCCCGCACGC
TTCCTTGCCAGGCAGCTTCGGCGGCGGCGGCGGCGGCGGCGATGGTGGCG
ACGAGCTATGTTTTGGCGGCGGCAGCGACGACGTGCCTGCGATGGAGGAG
CCATTTCGATTCCTGCCACCACCACCGACGCTCCCAACGCCGCGCCTGCC
GCTCCGCGCCACCCTTTGCCCGCCGCCGCCGCCGGCGAGCCTGGCTGGAA
TCATTGGGTACGCGGCCGACGCGGACGTCGCATGTCTCGGCCCACTTGAT
GGCCTCCTTTCCAACAGGCAGGGGCCTGGCAACACCAGCGGCTTCGGCGG
CGGCGGCGGCTGCGGCAGCGGGGAGGGCGTGCGTGGCGATGCAGGGAGCG
AGTCGAGTGGCGCAGAAGCCAGCGACTCCGGCTCTGGCAGCGACCGCCGA
TCCGGACGGCAGGGCAGGAACAGCAGGAGCA
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