mRNA_P-wetherbeei_contig10322.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10322.1.1
Unique NamemRNA_P-wetherbeei_contig10322.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: D8LTR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR3_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.230e-20
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  158 FGAVASIGMRMGIKHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGIMTPRQRERAAL 433
             G + + G+RM  K+++K+ RKR+P+  K     +YKG    KEG + S+GRF+ DPE+RLEI+APDL GFKL PYV+  +  PR+  +A L
Sbjct:    4 IGNIVTGGLRMS-KYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVWKPRRGGQALL 94          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A1Z5J9Q3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9Q3_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 3.450e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGI-MTPRQRER 424
            K+++KA +KR+ L  KRA  G+YKGN   KEGRLTSKG+F+ DP RRLE+V PDLTGFKL PY+A  +   P +++R
Sbjct:   31 KYLSKAAKKRLVLTTKRAHKGFYKGNGATKEGRLTSKGKFIVDPLRRLELVVPDLTGFKLKPYIARSVPRVPPEQQR 107          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A7S4A9E0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.050e-20
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVA 391
            K+++K+ RKR+PL  KRA  GYYKGN   KEGRLTSKG+F++DP+++LE++APDL GF L PY+A
Sbjct:   54 KYISKSARKRLPLTTKRAGKGYYKGNGSTKEGRLTSKGKFVSDPKKKLELMAPDLEGFNLKPYIA 118          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A448ZFN2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFN2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.630e-19
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVA 391
            K+++K+ RKR+PL  KRA  GYYKG    KEGRLTSKG+F+ DP+++LE++ PDL GF L PY+A
Sbjct:   19 KYISKSARKRMPLTTKRAGKGYYKGKGATKEGRLTSKGKFIPDPKKKLELIVPDLEGFNLKPYIA 83          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: B5YMJ4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMJ4_THAPS)

HSP 1 Score: 87.0 bits (214), Expect = 1.000e-18
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGI--MTPRQR 418
            K+++K+  KR+PL  KRA  GYYKG  C  EGRLTSKG+F+A+P ++L+++ PDL GFKL PY+A  I  + P QR
Sbjct:   82 KYLSKSATKRLPLDTKRAKKGYYKGKGCTSEGRLTSKGKFIANPLKKLQLIVPDLEGFKLKPYIAKSISKVPPEQR 157          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A7S2KAW4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAW4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.960e-18
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGI--MTPRQR 418
            K++TKA  KR+PL  K+   GYYKGN    EGR+TSKG+F+ADP ++L++V PDL GFKL PY+A  +  + P QR
Sbjct:   67 KYLTKAATKRLPLTNKKVKKGYYKGNGATVEGRITSKGKFIADPMKKLQLVVPDLEGFKLKPYIASAVSKLPPEQR 142          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A7S3L6Q4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6Q4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.540e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  158 FGAVASIG-MRMGIKHVTKAGRKRVPLHVKRAPIG-YYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGIMT-PRQRER 424
            F A  ++G +R   K+++K+ RKR PL  KRA  G +YKG    KEGRLTSKG+F+ DP +RLE++ PDLTGFKL PY+A  +   P +++R
Sbjct:   15 FTASLNLGQVRFMSKYMSKSARKRQPLTTKRASRGGFYKGKGGTKEGRLTSKGKFIVDPLKRLELIVPDLTGFKLKPYIAASVPKHPPEKQR 106          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A7S1D0Q8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0Q8_CYCTE)

HSP 1 Score: 81.3 bits (199), Expect = 3.990e-17
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  158 FGAVASIGMRMGIKHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVA 391
            F +  S  +R   K ++K+  KR+PL  KRA  G+YKG    K+GRLTSKG+F+ DP +RLE+V PDL GFKL PY+A
Sbjct:   10 FLSPVSSSVRHMSKFLSKSATKRLPLGTKRARKGFYKGKGGTKDGRLTSKGKFIVDPAKRLELVVPDLQGFKLKPYIA 87          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: K0SRM2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SRM2_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 5.540e-17
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  197 KHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVA 391
            K+++K+  KR+PL+ KRA  GYYKG  C  EGRLTSKG+F+ADP ++L ++ PDL GF L PY+A
Sbjct:  141 KYLSKSATKRLPLNTKRAKKGYYKGKGCTSEGRLTSKGKFIADPLKKLNLIVPDLEGFTLKPYIA 205          
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Match: A0A7S2RFS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFS1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.090e-17
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  182 MRMGIKHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRLTSKGRFLADPERRLEIVAPDLTGFKLLPYVA 391
            +R+  K+   A RKR+PL  KRA  GYYKGN CR EGR TSKG F+ D  R LE+V PDL GFKL PYV+
Sbjct:   29 LRLFSKYYGNALRKRLPLSPKRARKGYYKGNGCRSEGRHTSKGGFVVDKNRLLELVVPDLQGFKLKPYVS 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10322.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR3_ECTSI3.230e-2046.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5J9Q3_FISSO3.450e-2057.14Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4A9E0_9STRA9.050e-2061.54Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZFN2_9STRA5.630e-1958.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B5YMJ4_THAPS1.000e-1853.95Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2KAW4_9STRA2.960e-1853.95Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3L6Q4_9STRA8.540e-1850.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1D0Q8_CYCTE3.990e-1752.56Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
K0SRM2_THAOC5.540e-1756.92Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2RFS1_9STRA6.090e-1760.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10322contigP-wetherbeei_contig10322:1710..2343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps6810
PFAMsMRP-L27
Model size470
Max annot lvl2836|Bacillariophyta
KEGG koko:K17422
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.71e-20
EggNOG OGs2CWIG@1|root,2RUN7@2759|Eukaryota,2XGUV@2836|Bacillariophyta
Ec32 ortholog descriptionRibosomal protein L27/L41, mitochondrial
Ec32 orthologEc-28_003130.1
DescriptionMitochondrial ribosomal protein L27
Cds size300
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.7666552-UTR-P-wetherbeei_contig10322:1709..17311683185863.7666552-UTR-P-wetherbeei_contig10322:1709..1731Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10322 1710..1731 -
1683185863.7959838-UTR-P-wetherbeei_contig10322:2195..23431683185863.7959838-UTR-P-wetherbeei_contig10322:2195..2343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10322 2196..2343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.7750356-CDS-P-wetherbeei_contig10322:1731..18711683185863.7750356-CDS-P-wetherbeei_contig10322:1731..1871Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10322 1732..1871 -
1683185863.78475-CDS-P-wetherbeei_contig10322:2035..21951683185863.78475-CDS-P-wetherbeei_contig10322:2035..2195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10322 2036..2195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10322.1.1prot_P-wetherbeei_contig10322.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10322 1732..2195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10322.1.1

>prot_P-wetherbeei_contig10322.1.1 ID=prot_P-wetherbeei_contig10322.1.1|Name=mRNA_P-wetherbeei_contig10322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MLGFGAVASIGMRMGIKHVTKAGRKRVPLHVKRAPIGYYKGNQCRKEGRL
TSKGRFLADPERRLEIVAPDLTGFKLLPYVAPGIMTPRQRERAALALNE*
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mRNA from alignment at P-wetherbeei_contig10322:1710..2343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10322.1.1 ID=mRNA_P-wetherbeei_contig10322.1.1|Name=mRNA_P-wetherbeei_contig10322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=634bp|location=Sequence derived from alignment at P-wetherbeei_contig10322:1710..2343- (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGTTTGGGGTTTAAAAGAGAAAGGAGCGTGTGTGGCGTCCATCAGG GCTTGTGCGACAGGTGTTTGCGTGCTCAGCCCTCTGTGCGCCGCCCCGAA GCGCCCGTTTTCACAGCACGTCGAAAAGGAGAAGCGAAAGGACGGAGGAT GCTCGGGTTCGGCGCCGTGGCGTCCATCGGCATGCGCATGGGCATAAAAC ACGTCACCAAGGCTGGCCGCAAGCGCGTGCCGCTGCACGTGAAGCGCGCA CCGATTGGCTACTACAAGGGGAACCAATGCCGCAAGGAAGGGCGATTGAC AAGCAAAGGTGAGAGAGATTGTTGTGTTCTGCCGTGATGAAACTCAGTTC ACCGAAACTCCGCGTCATTCTCAGAAAAGAGAGGACTACCTTGCATAAAC TCTGTCTCTCCTTTCAACATCTCTTGCGCTGCTCTGTTTCCTCGAACCAT TTATTGGCGAAAATCAACGCAGGGCGGTTCCTTGCTGATCCCGAGCGGCG ACTAGAAATCGTAGCGCCAGATCTGACGGGCTTCAAGCTGCTGCCATATG TCGCGCCGGGCATCATGACGCCCCGACAACGCGAGAGAGCGGCTTTGGCA TTGAACGAATAAAGAAACGAGTGATAGTATATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10322:1710..2343-

>mRNA_P-wetherbeei_contig10322.1.1 ID=mRNA_P-wetherbeei_contig10322.1.1|Name=mRNA_P-wetherbeei_contig10322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig10322:1710..2343- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGTTCGGCGCCGTGGCGTCCATCGGCATGCGCATGGGCATAAA
ACACGTCACCAAGGCTGGCCGCAAGCGCGTGCCGCTGCACGTGAAGCGCG
CACCGATTGGCTACTACAAGGGGAACCAATGCCGCAAGGAAGGGCGATTG
ACAAGCAAAGGGCGGTTCCTTGCTGATCCCGAGCGGCGACTAGAAATCGT
AGCGCCAGATCTGACGGGCTTCAAGCTGCTGCCATATGTCGCGCCGGGCA
TCATGACGCCCCGACAACGCGAGAGAGCGGCTTTGGCATTGAACGAATAA
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