mRNA_P-wetherbeei_contig1393.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1393.4.1
Unique NamemRNA_P-wetherbeei_contig1393.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.320e-17
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 2 
Query: 1037 EKAAREAVTRLLKPLVDAALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTTFDTLRRSFEVHARLVTVEALKALMEKHCMKRLREELQL 1345
            E  AR A+  LL+PLV   LVG +  D CLFAWDQ +IAGF V+LPR+AAM+  A  + L +C TF  +  +   HA LV+   L+ LME HCM  +R+E+++
Sbjct:  534 ESQARVALWALLEPLVTVGLVGHLGADACLFAWDQAVIAGFGVMLPRVAAMVVAAAADKLGACLTFAVMSEALFSHAHLVSTSQLQELMEAHCMPSIRKEMRV 636
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BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.560e-17
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 2 
Query: 1037 EKAAREAVTRLLKPLVDAALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTTFDTLRRSFEVHARLVTVEALKALMEKHCMKRLREELQL 1345
            E  AR A+  LL+PLV   LVG +  D CLFAWDQ +IAGF V+LPR+AAM+  A  + L +C TF  +  +   HA LV+   L+ LME HCM  +R+E+++
Sbjct:  606 ESQARVALWALLEPLVTMGLVGHLGADACLFAWDQAVIAGFGVMLPRVAAMVVAAAADKLEACLTFAVMSEALLSHAHLVSTPQLQELMEAHCMPLIRKEMRV 708
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BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Match: A0A7S3W126_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W126_EMIHU)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-11
Identity = 107/444 (24.10%), Postives = 171/444 (38.51%), Query Frame = 2 
Query:  122 DAPNFAELQSAEQMALVDAAAEAMMLDGDEAYGIFERRFGRVVDEAVATEAK----RRGKRLPFIDLVLEVAAEGAVSALRRLPA------EHRSLLRLAINTPLPADCRSGIWRLLLTDAPARADYLEAVKHGPAGAMSSSDMELTHRCRAIIDSGS-VVGGPAGQDNAVFVVKSALSFCQRRGKDASQDSL------------------------ILLMVPLALVFAPRVWRWQEDEDDDPARASSTDWGATKDSAKLPEASRRLAEGAAAEQETVAEVVEAFEALRTTAFGLWRLRSVASLGHACKAWGQLALGVLKEAGFSELLDHLAALSLAQHGEKAAREAVTRLLKPLVDAALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTTFDTLRRSFEVHARLVTVEALKALMEKHCMKRLREELQLP 1348
            D P  AEL + EQ A V  A + ++    E YG  +    R VD A+  E++    +  + L  ++  +++A  GA   L R P       EH +L  L +N  LP   R  +WR+ L    AR  +       P   +S  D  +  +C+  +  G   +     +  A    + +L    R  ++ ++                           +  ++PL  VF          E+ DP                                    E+VE + AL +    L ++ +              A   L +   ++L  HL A+        AA+ A+  LLK       VG +S D  LF WD CLIAG+  V   +A+ L + L++ L++CT    L   F +H R +TVE L+A +E+H M  LR  L +P
Sbjct:  103 DVPPLAELTAEEQTARVREARDGLLQT--EVYGRCKEAAWRAVDAALDAESEEVLLKAPRPLGKVETAIDIAGHGASQLLSRWPLHTELRWEHAALAWL-VNAHLPPSLRRALWRVKLRAPAARTRFEAKAAESPLALISPRDAIILRQCQTALQQGDPTLLSSLPRMRACASYRDSLDSIGRSLEERAEXXXXXXXXXXXXXXXXXXXXXXXXXRAVFWLLPLLRVFG---------EEADPG-----------------------------------ELVERYHALISA---LEQMPAAPQPSSTASGXXXAAAMDLLKGQDAKLAAHLEAVMGG-----AAKSAL--LLKAPCARLGVGLLSPDATLFVWDLCLIAGWTQVGAAIASALLL-LRDGLLACTAPAHLADYFLLHTRQLTVEQLRAALERHFMPELRARLGVP 488
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BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Match: A0A7S1C4T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4T7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.520e-7
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 2 
Query: 1055 AVTRLLKPLVDAALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTTFDTLRRSFEVHARLVTVEALKALMEKHCMKRLREEL 1339
            A+  L  P  + ALVG +  D  LFAWDQC++ GFDV +PR+ A +   L+ +++  T+ + + R F+  A  V  + L+  M    M  LR  L
Sbjct:   79 ALAALFAPHFNRALVGTLPMDALLFAWDQCVMVGFDVAVPRVLACVLHLLRREVLDATSVEGVMRVFKERAPHVPADELRGAMHALFMPGLRRRL 173
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BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Match: A0A7S1C5M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5M5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.340e-5
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 2 
Query: 1091 ALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTTFDTLRRSFEVHARLVTVEALKALMEKHCMKRLREEL 1339
            A VG +  D  LFAWDQC++ GFDV +PR+ A +   L+ +++  T+ + + R F+  A  V  + L+  M    M  LR  L
Sbjct:    3 ARVGTLPMDALLFAWDQCVMVGFDVAVPRVLACVLHLLRREVLDATSVEGVMRVFKERAPHVPADELRGAMHALFMPGLRRRL 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1393.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVV0_ECTSI4.320e-1747.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX11_9PHAE7.560e-1747.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3W126_EMIHU1.200e-1124.10Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S1C4T7_9STRA5.520e-735.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1C5M5_9STRA1.340e-536.14Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1393contigP-wetherbeei_contig1393:3190..5334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008621428.1
Model size2145
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-26
EggNOG OGs2CN9E@1|root,2QUN2@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002240.1
Cds size2043
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.3575344-UTR-P-wetherbeei_contig1393:3189..32201683186002.3575344-UTR-P-wetherbeei_contig1393:3189..3220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 3190..3220 +
1683186002.3814855-UTR-P-wetherbeei_contig1393:5263..53341683186002.3814855-UTR-P-wetherbeei_contig1393:5263..5334Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 5264..5334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.3713562-CDS-P-wetherbeei_contig1393:3220..52631683186002.3713562-CDS-P-wetherbeei_contig1393:3220..5263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1393 3221..5263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1393.4.1prot_P-wetherbeei_contig1393.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1393 3221..5263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1393.4.1

>prot_P-wetherbeei_contig1393.4.1 ID=prot_P-wetherbeei_contig1393.4.1|Name=mRNA_P-wetherbeei_contig1393.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=681bp
MEAPWLTEAEQSIAEFKEWDVLCESLLSRLDAPNFAELQSAEQMALVDAA
AEAMMLDGDEAYGIFERRFGRVVDEAVATEAKRRGKRLPFIDLVLEVAAE
GAVSALRRLPAEHRSLLRLAINTPLPADCRSGIWRLLLTDAPARADYLEA
VKHGPAGAMSSSDMELTHRCRAIIDSGSVVGGPAGQDNAVFVVKSALSFC
QRRGKDASQDSLILLMVPLALVFAPRVWRWQEDEDDDPARASSTDWGATK
DSAKLPEASRRLAEGAAAEQETVAEVVEAFEALRTTAFGLWRLRSVASLG
HACKAWGQLALGVLKEAGFSELLDHLAALSLAQHGEKAAREAVTRLLKPL
VDAALVGFVSRDVCLFAWDQCLIAGFDVVLPRLAAMLAVALQEDLMSCTT
FDTLRRSFEVHARLVTVEALKALMEKHCMKRLREELQLPPVPQPARSPAG
AARALSVPGRASAPAATRSSLMQLGLPLETTALDGGGVPPDTLSGSVTAG
TLKEWSTGGSSGSPGRAPARALATPAAAPAPTSGSGAKREYVARAPPGQQ
PAPAAAAANKPEAAKEVARGQPAKAGARKGSGETAQAPEQASAQPPTAQA
GRDAAEEKPKLAATGKPAAPVSSPKAAANTKPNGVAAEKSAAPAPSPEAA
AKAASPKDMVKPASPSRRWPWSPKRPKDKG*
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mRNA from alignment at P-wetherbeei_contig1393:3190..5334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1393.4.1 ID=mRNA_P-wetherbeei_contig1393.4.1|Name=mRNA_P-wetherbeei_contig1393.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2145bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:3190..5334+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATCCAAACTACTCGCCACCTTTTCCCATATGGAAGCTCCATGGCTGA
CGGAGGCCGAACAAAGCATTGCCGAGTTCAAAGAATGGGATGTGCTCTGC
GAATCCCTCCTCTCGCGCCTCGACGCTCCCAACTTCGCCGAGCTGCAGTC
CGCAGAACAGATGGCGTTGGTGGACGCGGCAGCTGAAGCGATGATGCTGG
ACGGAGACGAGGCGTACGGCATCTTTGAACGGCGCTTCGGTCGCGTTGTG
GACGAGGCGGTCGCGACAGAGGCAAAGCGCCGCGGAAAGCGGCTTCCTTT
CATCGACCTTGTCTTGGAAGTGGCCGCTGAGGGAGCCGTTTCGGCCCTCC
GCCGTCTTCCTGCCGAGCATCGCTCTCTCCTACGCTTGGCCATCAACACC
CCGCTCCCAGCCGACTGCCGCTCCGGGATTTGGCGCCTCCTGCTGACTGA
TGCTCCCGCACGGGCCGATTATCTGGAAGCTGTCAAGCACGGCCCGGCCG
GCGCGATGTCCAGTTCCGACATGGAACTGACGCACCGCTGCCGCGCCATC
ATCGACTCCGGCTCCGTCGTTGGCGGACCGGCAGGACAAGACAACGCAGT
CTTCGTTGTCAAAAGCGCCCTGTCCTTCTGCCAACGACGCGGCAAAGACG
CCTCGCAGGACTCGCTGATCCTGCTGATGGTGCCGCTGGCGCTGGTCTTC
GCCCCTCGAGTATGGCGATGGCAGGAGGATGAGGACGACGACCCCGCTAG
AGCGAGCAGCACAGACTGGGGCGCGACAAAGGATTCTGCCAAGCTGCCGG
AGGCCAGCCGTCGTTTGGCAGAGGGCGCGGCCGCGGAGCAGGAGACCGTC
GCCGAAGTCGTCGAGGCGTTCGAGGCGCTGCGGACGACCGCTTTTGGCCT
CTGGCGGCTCCGTAGCGTAGCGTCCCTCGGCCACGCCTGCAAGGCGTGGG
GCCAGCTGGCGCTCGGAGTCCTGAAGGAGGCGGGCTTCTCGGAGCTCCTC
GACCACCTCGCCGCCCTCTCGCTCGCCCAGCACGGCGAAAAGGCCGCCCG
TGAGGCCGTCACGCGACTGCTGAAGCCGCTGGTGGACGCGGCGCTGGTCG
GGTTCGTCTCCCGCGACGTCTGCCTCTTCGCCTGGGACCAGTGCCTGATC
GCCGGCTTCGACGTCGTGCTGCCACGCCTGGCGGCGATGCTAGCGGTGGC
GCTGCAGGAGGATTTAATGTCGTGCACGACGTTCGACACCCTTCGCCGCA
GCTTCGAGGTGCATGCCCGCCTCGTCACCGTCGAGGCCCTCAAGGCGCTC
ATGGAAAAGCACTGCATGAAGCGGCTGCGGGAGGAGCTCCAGCTGCCGCC
GGTACCGCAACCGGCCCGGAGCCCAGCCGGCGCCGCCCGGGCACTTTCAG
TGCCCGGCAGGGCGAGCGCGCCAGCCGCGACGCGGAGCTCGCTGATGCAG
CTCGGCCTGCCGCTGGAGACGACGGCGCTGGACGGGGGCGGTGTTCCTCC
CGACACGCTGAGCGGCAGCGTGACGGCCGGGACACTGAAAGAATGGAGTA
CGGGCGGCAGCAGCGGTTCGCCCGGACGAGCGCCCGCACGGGCCTTGGCG
ACGCCAGCAGCAGCACCGGCGCCTACCAGCGGCAGCGGAGCAAAGAGAGA
ATATGTGGCTCGTGCACCGCCGGGCCAGCAGCCGGCGCCTGCCGCCGCCG
CCGCGAATAAGCCGGAGGCAGCGAAGGAGGTAGCCCGTGGCCAACCTGCC
AAAGCCGGCGCTCGAAAAGGGAGCGGAGAAACGGCACAGGCGCCTGAGCA
GGCATCGGCGCAGCCTCCAACGGCCCAGGCAGGCCGTGACGCCGCAGAGG
AAAAGCCAAAACTTGCGGCGACAGGTAAGCCTGCTGCCCCGGTGTCATCT
CCAAAGGCGGCAGCCAATACAAAGCCAAATGGGGTGGCAGCAGAGAAGTC
TGCTGCTCCAGCGCCATCCCCAGAGGCGGCAGCCAAGGCGGCATCACCAA
AGGATATGGTCAAGCCTGCGTCGCCATCGCGTCGTTGGCCATGGTCGCCA
AAGCGGCCGAAGGATAAAGGATAGCCCAGGATTTAGCCGGAAAACATGGG
GAGCTATGCGCGATGTAGCCAGGCGGCGCATTCTCGTGGTGGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1393:3190..5334+

>mRNA_P-wetherbeei_contig1393.4.1 ID=mRNA_P-wetherbeei_contig1393.4.1|Name=mRNA_P-wetherbeei_contig1393.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2043bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:3190..5334+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCTCCATGGCTGACGGAGGCCGAACAAAGCATTGCCGAGTTCAA
AGAATGGGATGTGCTCTGCGAATCCCTCCTCTCGCGCCTCGACGCTCCCA
ACTTCGCCGAGCTGCAGTCCGCAGAACAGATGGCGTTGGTGGACGCGGCA
GCTGAAGCGATGATGCTGGACGGAGACGAGGCGTACGGCATCTTTGAACG
GCGCTTCGGTCGCGTTGTGGACGAGGCGGTCGCGACAGAGGCAAAGCGCC
GCGGAAAGCGGCTTCCTTTCATCGACCTTGTCTTGGAAGTGGCCGCTGAG
GGAGCCGTTTCGGCCCTCCGCCGTCTTCCTGCCGAGCATCGCTCTCTCCT
ACGCTTGGCCATCAACACCCCGCTCCCAGCCGACTGCCGCTCCGGGATTT
GGCGCCTCCTGCTGACTGATGCTCCCGCACGGGCCGATTATCTGGAAGCT
GTCAAGCACGGCCCGGCCGGCGCGATGTCCAGTTCCGACATGGAACTGAC
GCACCGCTGCCGCGCCATCATCGACTCCGGCTCCGTCGTTGGCGGACCGG
CAGGACAAGACAACGCAGTCTTCGTTGTCAAAAGCGCCCTGTCCTTCTGC
CAACGACGCGGCAAAGACGCCTCGCAGGACTCGCTGATCCTGCTGATGGT
GCCGCTGGCGCTGGTCTTCGCCCCTCGAGTATGGCGATGGCAGGAGGATG
AGGACGACGACCCCGCTAGAGCGAGCAGCACAGACTGGGGCGCGACAAAG
GATTCTGCCAAGCTGCCGGAGGCCAGCCGTCGTTTGGCAGAGGGCGCGGC
CGCGGAGCAGGAGACCGTCGCCGAAGTCGTCGAGGCGTTCGAGGCGCTGC
GGACGACCGCTTTTGGCCTCTGGCGGCTCCGTAGCGTAGCGTCCCTCGGC
CACGCCTGCAAGGCGTGGGGCCAGCTGGCGCTCGGAGTCCTGAAGGAGGC
GGGCTTCTCGGAGCTCCTCGACCACCTCGCCGCCCTCTCGCTCGCCCAGC
ACGGCGAAAAGGCCGCCCGTGAGGCCGTCACGCGACTGCTGAAGCCGCTG
GTGGACGCGGCGCTGGTCGGGTTCGTCTCCCGCGACGTCTGCCTCTTCGC
CTGGGACCAGTGCCTGATCGCCGGCTTCGACGTCGTGCTGCCACGCCTGG
CGGCGATGCTAGCGGTGGCGCTGCAGGAGGATTTAATGTCGTGCACGACG
TTCGACACCCTTCGCCGCAGCTTCGAGGTGCATGCCCGCCTCGTCACCGT
CGAGGCCCTCAAGGCGCTCATGGAAAAGCACTGCATGAAGCGGCTGCGGG
AGGAGCTCCAGCTGCCGCCGGTACCGCAACCGGCCCGGAGCCCAGCCGGC
GCCGCCCGGGCACTTTCAGTGCCCGGCAGGGCGAGCGCGCCAGCCGCGAC
GCGGAGCTCGCTGATGCAGCTCGGCCTGCCGCTGGAGACGACGGCGCTGG
ACGGGGGCGGTGTTCCTCCCGACACGCTGAGCGGCAGCGTGACGGCCGGG
ACACTGAAAGAATGGAGTACGGGCGGCAGCAGCGGTTCGCCCGGACGAGC
GCCCGCACGGGCCTTGGCGACGCCAGCAGCAGCACCGGCGCCTACCAGCG
GCAGCGGAGCAAAGAGAGAATATGTGGCTCGTGCACCGCCGGGCCAGCAG
CCGGCGCCTGCCGCCGCCGCCGCGAATAAGCCGGAGGCAGCGAAGGAGGT
AGCCCGTGGCCAACCTGCCAAAGCCGGCGCTCGAAAAGGGAGCGGAGAAA
CGGCACAGGCGCCTGAGCAGGCATCGGCGCAGCCTCCAACGGCCCAGGCA
GGCCGTGACGCCGCAGAGGAAAAGCCAAAACTTGCGGCGACAGGTAAGCC
TGCTGCCCCGGTGTCATCTCCAAAGGCGGCAGCCAATACAAAGCCAAATG
GGGTGGCAGCAGAGAAGTCTGCTGCTCCAGCGCCATCCCCAGAGGCGGCA
GCCAAGGCGGCATCACCAAAGGATATGGTCAAGCCTGCGTCGCCATCGCG
TCGTTGGCCATGGTCGCCAAAGCGGCCGAAGGATAAAGGATAG
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