mRNA_P-wetherbeei_contig10320.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10320.1.1
Unique NamemRNA_P-wetherbeei_contig10320.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: A0A6H5L1H9_9PHAE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.770e-35
Identity = 82/200 (41.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   70 GRESRGDAEDCPICLG-PCLLQVGTNCNHQFCAKCFLEYANSVRGLKIKCPCCRSEVNLLHQRKADA-TSGETE----ASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYRVAL 648
            GR +R    +CPICL       V TNC H FCA+C L Y +    ++I+CP CR EV +LH    DA  +G+T+    A      A + G+  ++ +I+ FN R +G  RS  Q + DAP+LLR L SD+ RGD R+F  ++RR +     LQ  +  LYI+SP+D +PE++VGI G LDD++V +F L++++++YR  L
Sbjct:   54 GRLARHPGGECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVRIRCPMCRQEVTMLHGAAGDAQAAGDTDQAHDARAESAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQ----LQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 249          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: A0A0P5FYD2_9CRUS (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5FYD2_9CRUS)

HSP 1 Score: 110 bits (274), Expect = 8.440e-26
Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 1
Query:   73 RESRGDAEDCPICLGPCLLQVGTNCNHQFCAKCFLEYA--NSVRGLKIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            R   G    CP+CL     +V TNC H FC KC+L Y    S  G  ++CP CR +V +L Q   +     T  S  E      GT    R+I  +N RY+G  R   +TVR+ PIL R+L+S+I    G ++   LR   VS  ++ C   V+Y++SP+D +PEA  GILG +DD+LV L   V+++ +YR
Sbjct:   63 RRRYGSQNQCPVCLNDIAYEVETNCGHIFCCKCWLAYRAHGSFLGA-VRCPVCRQQVTILFQCFTENELNPTSGSEEEPEL---GT--FIREINSYNRRYSGEPRQFWETVRELPILFRHLVSEIFSEGGFLYLYRLR---VSLLVIGC---VIYLLSPLDIIPEAAFGILGLVDDMLVLLVVSVFLTNVYR 242          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: E9H0E3_DAPPU (E3 ubiquitin-protein ligase RNF170 (Fragment) n=4 Tax=Daphnia TaxID=6668 RepID=E9H0E3_DAPPU)

HSP 1 Score: 107 bits (267), Expect = 4.190e-25
Identity = 68/192 (35.42%), Postives = 104/192 (54.17%), Query Frame = 1
Query:   73 RESRGDAEDCPICLGPCLLQVGTNCNHQFCAKCFLEYA--NSVRGLKIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            R   G    CP+CL     +V TNC H FC +C+L Y    S  G  ++CP CR +V +L Q  +     E E + A G           R+I  +N RY+G  R   + +R+ P+L R++LS++    G ++   LR   VS  ++ C   V+Y++SP+D +PEA  G+LG +DD+LV L   V+I+ +YR
Sbjct:   24 RRRYGQQNQCPVCLNDIEYEVETNCGHIFCCRCWLAYRAHGSFLGA-VRCPVCRQQVTILFQGFS-----ENELNPASGSDEEPDLATFIREINSYNRRYSGEPRPFWENIRELPVLFRHILSEVFSEGGFLYLYRLR---VSLLVIGC---VIYLLSPLDIIPEAAFGLLGLVDDLLVLLVVAVFITNVYR 203          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: UPI001939D670 (E3 ubiquitin-protein ligase RNF170-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939D670)

HSP 1 Score: 107 bits (268), Expect = 5.770e-25
Identity = 70/182 (38.46%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CPICL    L V TNC H FCA C + Y      L  + CP CR +V+LL  R   A    +EA           TR    +I  +N R++G  R +   +RD P L+R+L S+     G +F   +R  L +  +L      LY++SP+DFLPEAV GI+G LDDV V +  L+Y++ +YR
Sbjct:   92 CPICLQEARLPVETNCGHLFCAHCIITYWRFGNWLGAVNCPVCRQQVSLL-LRNFQAGENHSEA-----------TRDALTNINDYNRRFSGQPRPILDYIRDIPALMRHLWSEFFSMGGLVFMFRVRIVLCAIAIL------LYLISPLDFLPEAVFGIIGLLDDVFVLMLVLIYMTVIYR 255          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: A0A5A9P4R7_9TELE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P4R7_9TELE)

HSP 1 Score: 107 bits (267), Expect = 1.060e-24
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVL-YIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CP+CL   +L V TNC H FC  C + Y      L  I CP CR  V LL     D TSG   A T +G+  +     +  DI  +N R++G  RSL   +RD P LLR+   ++    G  +   +R       +L CL+G L Y+VSP+DF+PE VVG+LG++DD  V L   +YIS +YR
Sbjct:   88 CPVCLQQAVLPVETNCGHLFCGPCIVAYWRYGTWLGAINCPICRQMVTLLFPLFHD-TSGS--ARTQDGQVEA---AQIVNDIDDYNRRFSGQPRSLVDRLRDVPTLLRHAFREMFSVGGLFWMFRIR-------ILLCLVGALTYLVSPLDFIPEGVVGLLGFMDDFFVILLLFIYISIMYR 257          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: A0A671M8Z7_9TELE (E3 ubiquitin-protein ligase RNF170 n=7 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A671M8Z7_9TELE)

HSP 1 Score: 106 bits (265), Expect = 1.230e-24
Identity = 68/183 (37.16%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVL-YIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CP+CL   LL V TNC H FC  C + Y      L  I CP CR  V LL     D    + E +             + RDI  +N R++G  RSL + +RD P LLR+   ++    G  +   +R       +L C+LG L Y+ SP+DF+PE V+G+LG++DD  V L   +YIS +YR
Sbjct:   77 CPVCLQQALLPVETNCGHLFCGPCIVAYWRYGTWLGSISCPICRQTVTLLFPLFRDTGGAQVEPAL------------ILRDIHDYNRRFSGQPRSLLERLRDVPTLLRHAFREMFSVGGLFWMFRVR-------ILLCVLGALMYLASPLDFIPEGVLGLLGFMDDFFVILLLFIYISIMYR 240          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: K1QDR4_CRAGI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QDR4_CRAGI)

HSP 1 Score: 106 bits (264), Expect = 1.850e-24
Identity = 68/183 (37.16%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   97 DCPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            DCP+CLG     + TNC H FC  C + Y      L  ++CP CR +V LL     D    +  AS  E          +   IA +N R++G  R L   +RD P LLR+ L +     G I+   LR   +       L  +LY +SP+D +PEAV GILG+LDD+ V L   +YIS +YR
Sbjct:   75 DCPVCLGNTQYGIETNCGHIFCGTCIITYWEHGTWLGAVRCPVCRQQVTLLLVHFTDEEQNQPSASKTE----------ILNKIADYNRRFSGEPRPLMDYLRDLPTLLRHALREFFSVGGLIWMFRLRIIAIF------LAALLYFISPLDIIPEAVFGILGFLDDLFVLLLLAIYISIIYR 241          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: W5M630_LEPOC (E3 ubiquitin-protein ligase RNF170 n=3 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M630_LEPOC)

HSP 1 Score: 106 bits (264), Expect = 2.470e-24
Identity = 69/189 (36.51%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLL------HQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVL-YIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CP+CL    L V TNC H FC  C + Y      L  I CP CR  V LL      H   A    G+ EA              + +D+  +N R++G  RSL   +RD P LLR+   ++    G  +   +R       +L CL+G L Y+ SP+DF+PEA+ GILG++DD+ V L   +YIS +YR
Sbjct:   88 CPVCLQQASLPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQMVTLLFPLFHEHDLPAQTQEGQPEAGQ------------ILQDVYDYNRRFSGQPRSLMDRIRDVPTLLRHAFREMFSVGGLFWMFRIR-------ILLCLIGALTYLASPLDFIPEALFGILGFMDDLFVILLLFIYISIMYR 257          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: H3AD78_LATCH (E3 ubiquitin-protein ligase RNF170 n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AD78_LATCH)

HSP 1 Score: 103 bits (258), Expect = 2.470e-24
Identity = 67/183 (36.61%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRAVERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLG-VLYIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CP+CL      V TNC H FC  C + Y      L  I CP CR  V LL     + +  + E   A         R + R++  +N R++G  RSL   + D P LLR+   ++    G  +   +R       +L CL+G +LY+ SP+DFLPEA+ GILG+LDD+ V    L+YIS +YR
Sbjct:    3 CPVCLQQATFPVETNCGHLFCGPCIIAYWTYGSWLGAISCPICRQTVTLLFPLFQEESQQQDEQQDA---------REILRNVNDYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFSVGGLFWMFRIR-------ILLCLMGALLYLASPLDFLPEALFGILGFLDDLFVIFLLLIYISIMYR 169          
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Match: A0A673ZI15_SALTR (E3 ubiquitin-protein ligase RNF170 n=3 Tax=Salmoninae TaxID=504568 RepID=A0A673ZI15_SALTR)

HSP 1 Score: 105 bits (263), Expect = 2.590e-24
Identity = 69/186 (37.10%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  100 CPICLGPCLLQVGTNCNHQFCAKCFLEYANSVRGL-KIKCPCCRSEVNLLHQRKADATSGETEASTAEGRATSDGTRA---VERDIAHFNTRYAGA-RSLGQTVRDAPILLRYLLSDIVRGDGRIFAIMLRRTLVSYQLLQCLLGVL-YIVSPVDFLPEAVVGILGYLDDVLVFLFALVYISTLYR 639
            CP+CL   +L V TNC H FC  C + Y      L  I CP CR  V LL     +  S +            DGT     + RD++ +N R++G  RSL   +RD P LLR+L  ++    G  +   +R       +L CL+G L Y++SP+DF+PEA+ G+LG+LDD  + L   +YIS +YR
Sbjct:   74 CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFHEQVSPQQ---------VQDGTVEPLFILRDLSDYNRRFSGQPRSLMDRLRDVPTLLRHLFREMFSVGGLFWMFRIR-------VLLCLIGALTYLISPLDFIPEALFGLLGFLDDFFIILLLFIYISIMYR 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1H9_9PHAE8.770e-3541.00E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocar... [more]
A0A0P5FYD2_9CRUS8.440e-2638.54E3 ubiquitin-protein ligase RNF170 n=1 Tax=Daphnia... [more]
E9H0E3_DAPPU4.190e-2535.42E3 ubiquitin-protein ligase RNF170 (Fragment) n=4 ... [more]
UPI001939D6705.770e-2538.46E3 ubiquitin-protein ligase RNF170-like n=1 Tax=St... [more]
A0A5A9P4R7_9TELE1.060e-2439.89E3 ubiquitin-protein ligase RNF170 n=1 Tax=Triplop... [more]
A0A671M8Z7_9TELE1.230e-2437.16E3 ubiquitin-protein ligase RNF170 n=7 Tax=Sinocyc... [more]
K1QDR4_CRAGI1.850e-2437.16E3 ubiquitin-protein ligase RNF170 n=1 Tax=Crassos... [more]
W5M630_LEPOC2.470e-2436.51E3 ubiquitin-protein ligase RNF170 n=3 Tax=Lepisos... [more]
H3AD78_LATCH2.470e-2436.61E3 ubiquitin-protein ligase RNF170 n=2 Tax=Latimer... [more]
A0A673ZI15_SALTR2.590e-2437.10E3 ubiquitin-protein ligase RNF170 n=3 Tax=Salmoni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10320contigP-wetherbeei_contig10320:362..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8049.ENSGMOP00000012892
Preferred nameRNF170
PFAMsDUF1232,zf-C3HC4,zf-RING_UBOX
Model size648
Max annot lvl33208|Metazoa
KEGG koko:K15707
Hectar predicted targeting categoryother localisation
GOsGO:0007275,GO:0008150,GO:0009790,GO:0009792,GO:0032501,GO:0032502,GO:0043009,GO:0048856
Exons2
Evalue1.09e-25
EggNOG OGsKOG2164@1|root,KOG2164@2759|Eukaryota,38E59@33154|Opisthokonta,3BERY@33208|Metazoa,3CS6V@33213|Bilateria,485EF@7711|Chordata,496TH@7742|Vertebrata,4A0DW@7898|Actinopterygii
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-10_004530.1
EC2.3.2.27
DescriptionRing finger protein 170
Cds size648
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.630468-CDS-P-wetherbeei_contig10320:361..8471683185863.630468-CDS-P-wetherbeei_contig10320:361..847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10320 362..847 +
1683185863.6420527-CDS-P-wetherbeei_contig10320:1326..14881683185863.6420527-CDS-P-wetherbeei_contig10320:1326..1488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10320 1327..1488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10320.1.1prot_P-wetherbeei_contig10320.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10320 362..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10320.1.1

>prot_P-wetherbeei_contig10320.1.1 ID=prot_P-wetherbeei_contig10320.1.1|Name=mRNA_P-wetherbeei_contig10320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
QNRRAASSYHRSRSQEEEEQLGRGRESRGDAEDCPICLGPCLLQVGTNCN
HQFCAKCFLEYANSVRGLKIKCPCCRSEVNLLHQRKADATSGETEASTAE
GRATSDGTRAVERDIAHFNTRYAGARSLGQTVRDAPILLRYLLSDIVRGD
GRIFAIMLRRTLVSYQLLQCLLGVLYIVSPVDFLPEAVVGILGYLDDVLV
FLFALVYISTLYRVAL
back to top

mRNA from alignment at P-wetherbeei_contig10320:362..1488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10320.1.1 ID=mRNA_P-wetherbeei_contig10320.1.1|Name=mRNA_P-wetherbeei_contig10320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1127bp|location=Sequence derived from alignment at P-wetherbeei_contig10320:362..1488+ (Phaeothamnion wetherbeei SAG_119_79)
CAAAATCGAAGGGCTGCATCTTCGTATCATCGATCTCGCTCTCAAGAGGA AGAGGAGCAGCTCGGAAGGGGGCGGGAATCACGAGGAGACGCAGAGGACT GCCCGATTTGCCTTGGTCCATGCCTTCTTCAAGTAGGGACGAACTGCAAT CACCAATTCTGCGCGAAGTGTTTCTTGGAGTATGCTAACAGTGTTAGAGG ATTGAAGATAAAGTGCCCGTGCTGCCGTTCCGAGGTCAATTTGTTGCACC AGAGGAAGGCAGATGCAACCAGTGGAGAAACGGAGGCGTCGACAGCGGAA GGACGCGCCACCAGCGATGGAACGAGGGCAGTAGAGCGAGACATAGCGCA TTTCAACACACGGTACGCTGGCGCCCGATCGCTGGGGCAGACGGTCCGGG ATGCGCCGATCTTGCTCCGTTACCTCCTGTCGGACATCGTTCGCGGCGAC GGCCGCATCTTTGCTATCATGCTCCGCCGCACGCTGGTGAGATTCCTTGA CAATCCCTTTCTTTTCTTCCCCCCTAGTGCTGCTTGCTGTCTTACCCCTT CTTTTACGTTGTTGCTTTCTGCGAGTTCGCCAGCTAGGCTCCAAAAGTGA AGGGGTTTGTGTACGGTAGTTTGGGGATAGATTAGCCTTTGATTGCTTAT GCACAGACCTTGACTGTGTTCGCTGCTCGCGAGTCTTGCGGGTGATACAG TAAATCAGATCCAAACGACTGCGGCGACCTTTCGGTCTGTTAGGACATGG CTTTGTCGCAAAGGCTGCACCGGGCCGTGAGGCGACAAAGAGCAGTTCTC CTGCACAAGCCGCTCGCTCTCAGCTGCTGACCTCCTCCAATACTTATCGC ATTCGCGCCGCTCGTTCCGGCTTGCTTTTCCCTTCAACCCGCCCGGCCCC TTCGCCACTCACTCGCCTCCTATCCCTTCGCCCACATTGCGTGCCGCTCT GCCCGCCGATCACAGGTCTCTTATCAGCTGCTGCAGTGCCTCCTTGGGGT GCTCTACATCGTGTCGCCCGTCGACTTCCTGCCCGAGGCCGTGGTGGGCA TCCTTGGCTATCTCGACGACGTGTTGGTCTTTCTTTTCGCGCTCGTCTAC ATCAGCACGCTGTATCGGGTCGCGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10320:362..1488+

>mRNA_P-wetherbeei_contig10320.1.1 ID=mRNA_P-wetherbeei_contig10320.1.1|Name=mRNA_P-wetherbeei_contig10320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig10320:362..1488+ (Phaeothamnion wetherbeei SAG_119_79)
CAAAATCGAAGGGCTGCATCTTCGTATCATCGATCTCGCTCTCAAGAGGA
AGAGGAGCAGCTCGGAAGGGGGCGGGAATCACGAGGAGACGCAGAGGACT
GCCCGATTTGCCTTGGTCCATGCCTTCTTCAAGTAGGGACGAACTGCAAT
CACCAATTCTGCGCGAAGTGTTTCTTGGAGTATGCTAACAGTGTTAGAGG
ATTGAAGATAAAGTGCCCGTGCTGCCGTTCCGAGGTCAATTTGTTGCACC
AGAGGAAGGCAGATGCAACCAGTGGAGAAACGGAGGCGTCGACAGCGGAA
GGACGCGCCACCAGCGATGGAACGAGGGCAGTAGAGCGAGACATAGCGCA
TTTCAACACACGGTACGCTGGCGCCCGATCGCTGGGGCAGACGGTCCGGG
ATGCGCCGATCTTGCTCCGTTACCTCCTGTCGGACATCGTTCGCGGCGAC
GGCCGCATCTTTGCTATCATGCTCCGCCGCACGCTGGTCTCTTATCAGCT
GCTGCAGTGCCTCCTTGGGGTGCTCTACATCGTGTCGCCCGTCGACTTCC
TGCCCGAGGCCGTGGTGGGCATCCTTGGCTATCTCGACGACGTGTTGGTC
TTTCTTTTCGCGCTCGTCTACATCAGCACGCTGTATCGGGTCGCGCTG
back to top