mRNA_P-wetherbeei_contig13908.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13908.3.1
Unique NamemRNA_P-wetherbeei_contig13908.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A0A258K499_9HYPH (3-dehydroquinate dehydratase n=3 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A258K499_9HYPH)

HSP 1 Score: 198 bits (503), Expect = 7.340e-63
Identity = 93/133 (69.92%), Postives = 110/133 (82.71%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            ++F+NGPN NLYGL   GTYGS++F  LQ+RCEA A    + L FRQSN EG +VDWIQEA  KAD ++IN AGLTYTSIA+LDALLAF GP++E HMSNIY+RE FRHHS++SKAA+GIVAGLGA GYELAI
Sbjct:    4 IFFINGPNANLYGLDPSGTYGSESFPQLQARCEAHAATLGVTLDFRQSNHEGVMVDWIQEAREKADAIVINAAGLTYTSIAILDALLAFEGPIIETHMSNIYKREPFRHHSYVSKAASGIVAGLGALGYELAI 136          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A7IIG9_XANP2 (3-dehydroquinate dehydratase n=3 Tax=Xanthobacter TaxID=279 RepID=A7IIG9_XANP2)

HSP 1 Score: 198 bits (503), Expect = 7.830e-63
Identity = 92/133 (69.17%), Postives = 110/133 (82.71%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            ++F+NGPN NLYGL   GTYGS++F  +++RC+A A    + L FRQSN EG +VDWIQEA  KAD ++IN AGLTYTSIA+LDALLAFP P++E HMSN+YRRE FRHHSF+SKAATGIVAGLGA GYELAI
Sbjct:    5 IFFINGPNANLYGLDPSGTYGSESFPAIEARCQAHAAGLGVTLDFRQSNHEGVMVDWIQEARAKADAIVINAAGLTYTSIAILDALLAFPKPIIEAHMSNVYRREPFRHHSFVSKAATGIVAGLGALGYELAI 137          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A0A1W6ZT60_9HYPH (3-dehydroquinate dehydratase n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZT60_9HYPH)

HSP 1 Score: 194 bits (493), Expect = 3.070e-61
Identity = 94/137 (68.61%), Postives = 111/137 (81.02%), Query Frame = 1
Query:   13 TTRAVYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            T R + FLNGPN NLYGL  +GTYGS++F  +++RC   A    ++L FRQSN EGEL+DWIQ A   ADG++INGAGLTYTSIA+LDALL+F  P++EVHMSNIY+RE FRHHSFISKAATGIVAGLG  GYELAI
Sbjct:    2 TQRRITFLNGPNANLYGLDSKGTYGSESFPQIEARCRQHAESLGVSLDFRQSNHEGELIDWIQAARLDADGLLINGAGLTYTSIAILDALLSFEKPIIEVHMSNIYKREPFRHHSFISKAATGIVAGLGPLGYELAI 138          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A0A848K1V3_9HYPH (3-dehydroquinate dehydratase n=7 Tax=Xanthobacter TaxID=279 RepID=A0A848K1V3_9HYPH)

HSP 1 Score: 193 bits (490), Expect = 7.960e-61
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            ++FLNGPN NLYGL   GTYG ++F  ++ RC A A    ++L FRQSN EGE+VDWIQEA  KAD ++IN AGLTYTSIA+LDALLAF GP++E HMSNI++RE FRHHSF+SKAATG+VAGLGA GYELAI
Sbjct:    5 IFFLNGPNANLYGLDPSGTYGRESFPAIRERCLAYAAGLGVSLDFRQSNHEGEIVDWIQEARLKADAIVINAAGLTYTSIAILDALLAFDGPIIETHMSNIWKREPFRHHSFVSKAATGVVAGLGALGYELAI 137          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A0A0S9NVX6_9BURK (3-dehydroquinate dehydratase n=1 Tax=Pseudorhodoferax sp. Leaf274 TaxID=1736318 RepID=A0A0S9NVX6_9BURK)

HSP 1 Score: 192 bits (489), Expect = 1.290e-60
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            V+FLNGPN NLYGL    TYGSD+F  LQSRCE +AG   + L F QSN EG+L+DW+QEA   ADG++IN AGLTYTSIA+LDALLAFPG ++E HMSNI++RE FRHHSFISKAA G++AGLG +GYE AI
Sbjct:   11 VWFLNGPNANLYGLDANKTYGSDSFPVLQSRCEHKAGTLGVQLRFLQSNHEGQLIDWLQEARGVADGIVINAAGLTYTSIAILDALLAFPGKIIEAHMSNIWKREPFRHHSFISKAADGVIAGLGGDGYEFAI 143          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: UPI0018E9A57F (3-dehydroquinate dehydratase n=1 Tax=Acuticoccus mangrovi TaxID=2796142 RepID=UPI0018E9A57F)

HSP 1 Score: 192 bits (488), Expect = 1.370e-60
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            V+FLNGPN NLYGL   GTYGS++F  +++RCE  A R  +AL FRQSN EG LVDWIQEA   A G+IIN AGLTYTS+A+LDALLAF GP++E HMSNI++RE FRHHS++S+AATG++AGLGA GYELA+
Sbjct:    4 VFFLNGPNANLYGLDPSGTYGSESFPAIKARCERHAERLGLALDFRQSNHEGVLVDWIQEARGSAAGIIINAAGLTYTSVAILDALLAFDGPIIEAHMSNIWKREPFRHHSYVSRAATGVIAGLGALGYELAL 136          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: J3I094_9BRAD (3-dehydroquinate dehydratase n=6 Tax=Bradyrhizobium TaxID=374 RepID=J3I094_9BRAD)

HSP 1 Score: 192 bits (487), Expect = 2.140e-60
Identity = 91/137 (66.42%), Postives = 110/137 (80.29%), Query Frame = 1
Query:   13 TTRAVYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            T   +YFLNGPN NLYGL   GTYG ++F ++++RCE  A    + L FRQSN EG LVDWIQEA  KA GV+IN AGLTYTSIA+LDALLAF GP++E HMSNI++RE FRHHS++S+AATG+VAGLGA GYELA+
Sbjct:    2 TKPTIYFLNGPNANLYGLDRSGTYGRESFVSIRTRCEDHAATLGLTLDFRQSNHEGVLVDWIQEAREKAAGVVINAAGLTYTSIAILDALLAFEGPIIEAHMSNIWKREPFRHHSYVSRAATGVVAGLGALGYELAL 138          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: UPI001CD7D4BE (3-dehydroquinate dehydratase n=1 Tax=Bradyrhizobium sp. BRP22 TaxID=2793821 RepID=UPI001CD7D4BE)

HSP 1 Score: 191 bits (486), Expect = 3.030e-60
Identity = 89/133 (66.92%), Postives = 109/133 (81.95%), Query Frame = 1
Query:   25 VYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            VYFLNGPN NLYGL   GTYG ++F ++++RCE  A    +AL FRQSN EG LVDW+QEA  KA GVIIN  GLTYTS+++LDALLAF GP++E HMSNI++RE FRHHS++S+AATG+VAGLGA GYELA+
Sbjct:    6 VYFLNGPNANLYGLDKNGTYGRESFASIKTRCEEHAASLGLALEFRQSNHEGVLVDWLQEAREKASGVIINATGLTYTSVSILDALLAFEGPIIEAHMSNIWKREPFRHHSYVSRAATGVVAGLGALGYELAL 138          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: A0A193FZ96_9BORD (3-dehydroquinate dehydratase n=1 Tax=Bordetella bronchialis TaxID=463025 RepID=A0A193FZ96_9BORD)

HSP 1 Score: 191 bits (486), Expect = 3.930e-60
Identity = 92/138 (66.67%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   10 STTRAVYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            + T  V+FLNGPN NLYGL    TYGS++F  L+ RCEA+A R  IAL F QSN EG+L+DWIQEA   + G+IIN AGLTYTSI LLDALL+FPG ++EVHMSNI++RE FRHHS+ISKAA G++AGLG +GYELAI
Sbjct:   11 ANTAKVWFLNGPNANLYGLDANKTYGSESFPVLRQRCEAKAARLGIALNFVQSNHEGQLIDWIQEARGASQGIIINAAGLTYTSIPLLDALLSFPGRIIEVHMSNIWKREPFRHHSYISKAADGVIAGLGGDGYELAI 148          
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Match: UPI001A98067E (3-dehydroquinate dehydratase n=1 Tax=Rhizobium bangladeshense TaxID=1138189 RepID=UPI001A98067E)

HSP 1 Score: 191 bits (485), Expect = 4.450e-60
Identity = 86/138 (62.32%), Postives = 113/138 (81.88%), Query Frame = 1
Query:   10 STTRAVYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIALTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGPVVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAI 423
            +T   V+FLNGPN NLYGL   GTYG+++F ++  RC+A A    + L FRQSN EG++VDWIQEA ++ADG++IN AGLTY+S+ +LDALLA+ GP++E HMSNI++RE FRHHSF+SKAATG++AGLGA GYELA+
Sbjct:    2 TTLPTVFFLNGPNANLYGLDKSGTYGTESFHSIGERCQAHAASIGLQLEFRQSNYEGQIVDWIQEARQQADGIVINAAGLTYSSVPILDALLAYDGPIIEAHMSNIWKREPFRHHSFVSKAATGVIAGLGALGYELAL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13908.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A258K499_9HYPH7.340e-6369.923-dehydroquinate dehydratase n=3 Tax=Xanthobactera... [more]
A7IIG9_XANP27.830e-6369.173-dehydroquinate dehydratase n=3 Tax=Xanthobacter ... [more]
A0A1W6ZT60_9HYPH3.070e-6168.613-dehydroquinate dehydratase n=1 Tax=Pseudorhodopl... [more]
A0A848K1V3_9HYPH7.960e-6168.423-dehydroquinate dehydratase n=7 Tax=Xanthobacter ... [more]
A0A0S9NVX6_9BURK1.290e-6068.423-dehydroquinate dehydratase n=1 Tax=Pseudorhodofe... [more]
UPI0018E9A57F1.370e-6067.673-dehydroquinate dehydratase n=1 Tax=Acuticoccus m... [more]
J3I094_9BRAD2.140e-6066.423-dehydroquinate dehydratase n=6 Tax=Bradyrhizobiu... [more]
UPI001CD7D4BE3.030e-6066.923-dehydroquinate dehydratase n=1 Tax=Bradyrhizobiu... [more]
A0A193FZ96_9BORD3.930e-6066.673-dehydroquinate dehydratase n=1 Tax=Bordetella br... [more]
UPI001A98067E4.450e-6062.323-dehydroquinate dehydratase n=1 Tax=Rhizobium ban... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13908contigP-wetherbeei_contig13908:1352..1777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog78245.Xaut_2570
PFAMsDHquinase_II
Model size426
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00848
KEGG koko:K03786
KEGG ReactionR03084
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-63
EggNOG OGsCOG0757@1|root,COG0757@2|Bacteria,1REYD@1224|Proteobacteria,2U8V8@28211|Alphaproteobacteria,3EZKY@335928|Xanthobacteraceae
EC4.2.1.10
DescriptionDehydroquinase class II
Cds size426
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.529981-CDS-P-wetherbeei_contig13908:1351..17771683186001.529981-CDS-P-wetherbeei_contig13908:1351..1777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13908 1352..1777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13908.3.1prot_P-wetherbeei_contig13908.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13908 1352..1777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13908.3.1

>prot_P-wetherbeei_contig13908.3.1 ID=prot_P-wetherbeei_contig13908.3.1|Name=mRNA_P-wetherbeei_contig13908.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MSKSTTRAVYFLNGPNTNLYGLSDQGTYGSDTFETLQSRCEAEAGRQSIA
LTFRQSNAEGELVDWIQEAIRKADGVIINGAGLTYTSIALLDALLAFPGP
VVEVHMSNIYRRETFRHHSFISKAATGIVAGLGAEGYELAIA
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mRNA from alignment at P-wetherbeei_contig13908:1352..1777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13908.3.1 ID=mRNA_P-wetherbeei_contig13908.3.1|Name=mRNA_P-wetherbeei_contig13908.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig13908:1352..1777+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAGAGCACGACCAGGGCGGTGTATTTCCTCAACGGCCCCAACAC CAACCTCTACGGCCTCTCGGACCAGGGCACCTACGGCAGCGATACCTTCG AGACGCTGCAGTCGCGCTGCGAGGCCGAGGCCGGGCGCCAGTCGATCGCG CTGACGTTCCGGCAGAGCAACGCCGAGGGCGAATTGGTGGACTGGATCCA GGAGGCGATTCGCAAGGCCGACGGCGTCATCATCAACGGTGCGGGGCTGA CCTACACGTCGATTGCGTTGTTGGACGCGTTGCTCGCCTTTCCGGGACCC GTGGTCGAGGTGCACATGAGCAACATCTACCGGCGCGAGACCTTCCGGCA CCATTCCTTCATTTCAAAGGCGGCCACGGGGATCGTCGCGGGCCTCGGTG CCGAAGGTTACGAACTCGCAATCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13908:1352..1777+

>mRNA_P-wetherbeei_contig13908.3.1 ID=mRNA_P-wetherbeei_contig13908.3.1|Name=mRNA_P-wetherbeei_contig13908.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig13908:1352..1777+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAGAGCACGACCAGGGCGGTGTATTTCCTCAACGGCCCCAACAC
CAACCTCTACGGCCTCTCGGACCAGGGCACCTACGGCAGCGATACCTTCG
AGACGCTGCAGTCGCGCTGCGAGGCCGAGGCCGGGCGCCAGTCGATCGCG
CTGACGTTCCGGCAGAGCAACGCCGAGGGCGAATTGGTGGACTGGATCCA
GGAGGCGATTCGCAAGGCCGACGGCGTCATCATCAACGGTGCGGGGCTGA
CCTACACGTCGATTGCGTTGTTGGACGCGTTGCTCGCCTTTCCGGGACCC
GTGGTCGAGGTGCACATGAGCAACATCTACCGGCGCGAGACCTTCCGGCA
CCATTCCTTCATTTCAAAGGCGGCCACGGGGATCGTCGCGGGCCTCGGTG
CCGAAGGTTACGAACTCGCAATCGCG
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