mRNA_P-wetherbeei_contig10318.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10318.2.1
Unique NamemRNA_P-wetherbeei_contig10318.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A3C0TSH3_9PROT (Glutamyl-tRNA amidotransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSH3_9PROT)

HSP 1 Score: 194 bits (493), Expect = 3.240e-61
Identity = 106/148 (71.62%), Postives = 123/148 (83.11%), Query Frame = 1
Query:    4 MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDKMLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            MR KLS ALKE+LKAKET+KVSTLRLILAA KDREIA+RGEDK L +EDIL IMQKMIRQRQES+  YE AGR DL+ QER EI +IE FLP QM  EEI++AC+ V+SE++  GLKDMG++MN LK+RY GQMDFK+ASA VK  LQ
Sbjct:    1 MRSKLSAALKEALKAKETVKVSTLRLILAAVKDREIAMRGEDKTLGDEDILLIMQKMIRQRQESSEVYEKAGRRDLAEQERAEIAVIEQFLPVQMGGEEIRTACKTVISELDAAGLKDMGRVMNTLKERYAGQMDFKEASACVKEFLQ 148          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A351T4V0_9PROT (Glutamyl-tRNA amidotransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T4V0_9PROT)

HSP 1 Score: 167 bits (422), Expect = 2.040e-50
Identity = 87/148 (58.78%), Postives = 119/148 (80.41%), Query Frame = 1
Query:    4 MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDKMLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            M ++ S+ALK++++AK+T ++STLRLI+AA KDREIALR ED+ L+++D+LQI+QKM+RQRQESA TYE A R +L+ QER+EI IIE FLP QM   E+  AC+  ++ V   GLKDMGK+M  LK+++TG+MDFK ASA+VK LL+
Sbjct:    1 MGDRFSDALKDAIRAKDTHRISTLRLIIAAIKDREIALRSEDRSLSDQDVLQILQKMVRQRQESAETYEQAARLELAEQERKEIDIIEAFLPRQMDEAEVSEACQSAIATVGAEGLKDMGKVMAQLKEQHTGEMDFKLASAKVKDLLK 148          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: UPI001C67FAD2 (GatB/YqeY domain-containing protein n=2 Tax=Rhizobium TaxID=379 RepID=UPI001C67FAD2)

HSP 1 Score: 161 bits (407), Expect = 4.140e-48
Identity = 88/150 (58.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 LMREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            +MR+KLSEALKES+KAK+T ++ST+RL+ AA KDR+IA RG  K  ++++DILQI+QKM++QR+ESA  YE AGR +L+TQEREEI II+ F+P Q+S+E+ Q   +  ++E    GL+DMGK+M VLK++Y GQMDF KASA VK LL+
Sbjct:    1 MMRDKLSEALKESMKAKDTRRLSTVRLVQAAIKDRDIANRGAGKDAVSDDDILQILQKMVKQREESAKIYEDAGRAELATQEREEIDIIKGFMPEQISDEQAQDLIKAAIAESGAQGLRDMGKVMAVLKEKYPGQMDFAKASASVKELLK 150          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A2C9DB70_9HYPH (Uncharacterized protein n=1 Tax=Hartmannibacter diazotrophicus TaxID=1482074 RepID=A0A2C9DB70_9HYPH)

HSP 1 Score: 159 bits (401), Expect = 3.480e-47
Identity = 87/148 (58.78%), Postives = 113/148 (76.35%), Query Frame = 1
Query:    4 MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALL 444
            MR+K+ EALK +LKA++  +VSTLRLI AA KDR+IA+RG  K  +T++++LQI+ KMI+QR ESA  YE  GR DL+ QEREE  II  FLP Q+S +E++SACR+VVSE    GL+D+G+ MN LK+RY GQMDF KAS  VK +L
Sbjct:    1 MRQKIDEALKVALKAQDKRRVSTLRLISAAIKDRDIAVRGSGKDRVTDDEVLQILAKMIKQRDESARLYEEGGRLDLAEQEREEAEIIREFLPKQLSEDEVKSACREVVSETGAQGLRDVGRCMNALKERYPGQMDFSKASGMVKGIL 148          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A0Q7XZQ4_9HYPH (Glutamyl-tRNA amidotransferase n=4 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A0Q7XZQ4_9HYPH)

HSP 1 Score: 157 bits (398), Expect = 9.640e-47
Identity = 84/150 (56.00%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 LMREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            +MR+ LS A+KE+LKAK++ ++ST+RLI  A KDR+IA RG  K  +T+++ILQI+QKMI+QR+ESA  Y+  GR +L+ QEREEI II +F+P QMS+E +++AC  V++E+   GL+DMGK++ VLK+RY GQMDF KAS  VK LL+
Sbjct:    1 MMRDTLSNAMKEALKAKDSRRLSTVRLIQTAVKDRDIAHRGVGKDPVTDDEILQILQKMIKQREESAKIYDEGGRAELAAQEREEIEIIRSFMPEQMSDEAVRAACEAVIAEIGAQGLRDMGKVIGVLKERYAGQMDFAKASGLVKELLK 150          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: UPI001C6A6EAC (GatB/YqeY domain-containing protein n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6A6EAC)

HSP 1 Score: 157 bits (397), Expect = 1.370e-46
Identity = 86/149 (57.72%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    4 MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            MR+ L+ ALK+++KAK+T +VST+RLILAA KDR+IA RG  K  +++E+ILQI+ KMI+QR+ESA  YE A R +L+ QEREE+ +I +FLP Q+S+E +Q+ACR+VV E    GL+DMGK MN LK R++GQMDF KAS  VK +L+
Sbjct:    1 MRDMLTAALKDAVKAKDTRRVSTIRLILAAIKDRDIANRGTGKDPVSDEEILQILSKMIKQREESARIYEEAARVELAEQEREEMDVIRSFLPAQLSDEAVQTACRRVVEETGAQGLRDMGKCMNTLKTRFSGQMDFSKASGMVKDMLK 149          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: UPI0010C06FDB (GatB/YqeY domain-containing protein n=1 Tax=Rhizobium sp. FY34 TaxID=2562309 RepID=UPI0010C06FDB)

HSP 1 Score: 156 bits (394), Expect = 3.790e-46
Identity = 85/149 (57.05%), Postives = 116/149 (77.85%), Query Frame = 1
Query:    4 MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            MR+KLS A+KE++KAKET ++ST+RLI  A KDR+IA RG  K  ++++DILQI+QKMI+QR+ESA  Y+   R +L+ QEREEI II  F+P QMS+E++  AC+ V++E+   GL+DMGK ++VLK+RY GQMDF KAS  VK LL+
Sbjct:    1 MRDKLSNAMKEAMKAKETRRLSTVRLIQTAIKDRDIANRGVGKDPVSDDDILQILQKMIKQREESAKMYDEGARAELAEQEREEITIIRDFMPEQMSDEQVLEACKAVIAEIGAQGLRDMGKCISVLKERYAGQMDFAKASGLVKELLK 149          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A0M3BDC9_9HYPH (Glutamyl-tRNA amidotransferase n=5 Tax=Rhizobiaceae TaxID=82115 RepID=A0A0M3BDC9_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 3.910e-46
Identity = 83/150 (55.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 LMREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            +MR+K S+ALK+S+KAK+T ++ST+RLI  A KDR+IA RG  K  +++EDILQI+QKM++QR+ESA  YE AGR +L+ QEREE  II++F+P Q+S ++++  C+ V+SE    GL+DMGK MN LK++Y GQMDF KAS  VK +L+
Sbjct:    1 MMRDKFSDALKDSMKAKDTRRLSTVRLIQTAIKDRDIANRGLGKDPVSDEDILQILQKMVKQREESAKIYEDAGRAELAAQEREETEIIKSFMPEQLSEDKVRQLCQSVISETGAHGLRDMGKCMNALKEKYPGQMDFAKASGVVKDMLK 150          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: A0A1N6R311_9HYPH (Uncharacterized protein n=5 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A1N6R311_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 7.860e-46
Identity = 83/150 (55.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 LMREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            +MR+KL+ A+KE++KAKE  ++ST+RLI  A KDR+IA RG  K  ++++DILQI+QKMI+QR+ESA  Y+  GR++L+ QEREEI II  F+P QMS+E++  AC+ V++E+   GL+DMGK +++LK+RY GQMDF +ASA VK LL+
Sbjct:    1 MMRDKLANAMKEAMKAKEARRLSTVRLIQTAIKDRDIANRGVGKDAVSDDDILQILQKMIKQREESAKIYDEGGRSELADQEREEIAIIRGFMPEQMSDEQVVEACKAVIAEIGAQGLRDMGKCISLLKERYAGQMDFARASAIVKDLLK 150          
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Match: L0NGJ1_9HYPH (Uncharacterized protein n=10 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=L0NGJ1_9HYPH)

HSP 1 Score: 154 bits (389), Expect = 2.240e-45
Identity = 80/150 (53.33%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 LMREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDK-MLTEEDILQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEIQSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ 447
            +MR+KL+ ALKE++KAK++ ++ST+RLI  A KDR+IA RG  K  +++++I+QI+QKM++QR+ESA  YE AGR +L+TQEREEI +I++F+P Q+  E+++  C+ V+SE    GL+DMGK MN LK++Y GQMDF KAS  VK +L+
Sbjct:    1 MMRDKLANALKEAMKAKDSRRLSTVRLIQTAIKDRDIANRGAGKDPVSDDEIMQILQKMVKQREESAKIYEEAGRAELATQEREEIGVIKSFMPEQLPEEKVRQLCQSVISETGAQGLRDMGKCMNALKEKYPGQMDFAKASGMVKDMLK 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10318.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TSH3_9PROT3.240e-6171.62Glutamyl-tRNA amidotransferase n=1 Tax=Alphaproteo... [more]
A0A351T4V0_9PROT2.040e-5058.78Glutamyl-tRNA amidotransferase n=1 Tax=Alphaproteo... [more]
UPI001C67FAD24.140e-4858.67GatB/YqeY domain-containing protein n=2 Tax=Rhizob... [more]
A0A2C9DB70_9HYPH3.480e-4758.78Uncharacterized protein n=1 Tax=Hartmannibacter di... [more]
A0A0Q7XZQ4_9HYPH9.640e-4756.00Glutamyl-tRNA amidotransferase n=4 Tax=Rhizobium/A... [more]
UPI001C6A6EAC1.370e-4657.72GatB/YqeY domain-containing protein n=1 Tax=Hoefle... [more]
UPI0010C06FDB3.790e-4657.05GatB/YqeY domain-containing protein n=1 Tax=Rhizob... [more]
A0A0M3BDC9_9HYPH3.910e-4655.33Glutamyl-tRNA amidotransferase n=5 Tax=Rhizobiacea... [more]
A0A1N6R311_9HYPH7.860e-4655.33Uncharacterized protein n=5 Tax=Rhizobium/Agrobact... [more]
L0NGJ1_9HYPH2.240e-4553.33Uncharacterized protein n=10 Tax=Rhizobium/Agrobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10318contigP-wetherbeei_contig10318:1528..1977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1144310.PMI07_001378
Preferred nameMA20_04985
PFAMsYqeY
Model size450
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09117
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-45
EggNOG OGsCOG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,2U7DJ@28211|Alphaproteobacteria,4BF16@82115|Rhizobiaceae
DescriptionYqey-like protein
Cds size447
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.322073-CDS-P-wetherbeei_contig10318:1527..19741683185863.322073-CDS-P-wetherbeei_contig10318:1527..1974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10318 1528..1974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.3941283-UTR-P-wetherbeei_contig10318:1974..19771683185863.3941283-UTR-P-wetherbeei_contig10318:1974..1977Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10318 1975..1977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10318.2.1prot_P-wetherbeei_contig10318.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10318 1528..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10318.2.1

>prot_P-wetherbeei_contig10318.2.1 ID=prot_P-wetherbeei_contig10318.2.1|Name=mRNA_P-wetherbeei_contig10318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MREKLSEALKESLKAKETLKVSTLRLILAAAKDREIALRGEDKMLTEEDI
LQIMQKMIRQRQESAATYEAAGRTDLSTQEREEIRIIETFLPPQMSNEEI
QSACRKVVSEVETPGLKDMGKIMNVLKDRYTGQMDFKKASAEVKALLQ*
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mRNA from alignment at P-wetherbeei_contig10318:1528..1977-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10318.2.1 ID=mRNA_P-wetherbeei_contig10318.2.1|Name=mRNA_P-wetherbeei_contig10318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig10318:1528..1977- (Phaeothamnion wetherbeei SAG_119_79)
CTTATGCGCGAGAAATTAAGCGAAGCCCTCAAAGAATCCCTTAAAGCCAA GGAAACCCTCAAGGTTTCTACTTTGCGGCTGATTTTGGCGGCGGCCAAAG ATCGTGAAATCGCCCTGCGCGGCGAAGACAAGATGCTGACGGAAGAGGAT ATTCTGCAGATCATGCAGAAAATGATCCGGCAGCGTCAGGAATCGGCTGC GACCTATGAGGCTGCGGGGCGGACCGATTTATCAACCCAGGAACGTGAAG AAATCAGGATCATTGAGACTTTCCTGCCGCCCCAGATGAGTAATGAAGAA ATTCAGTCCGCATGCAGGAAAGTAGTATCGGAAGTGGAAACCCCAGGCCT GAAAGATATGGGGAAAATCATGAATGTCCTGAAAGACCGCTATACGGGTC AGATGGATTTCAAAAAAGCCAGCGCGGAAGTCAAAGCACTGCTACAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10318:1528..1977-

>mRNA_P-wetherbeei_contig10318.2.1 ID=mRNA_P-wetherbeei_contig10318.2.1|Name=mRNA_P-wetherbeei_contig10318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig10318:1528..1977- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGAGAAATTAAGCGAAGCCCTCAAAGAATCCCTTAAAGCCAAGGA
AACCCTCAAGGTTTCTACTTTGCGGCTGATTTTGGCGGCGGCCAAAGATC
GTGAAATCGCCCTGCGCGGCGAAGACAAGATGCTGACGGAAGAGGATATT
CTGCAGATCATGCAGAAAATGATCCGGCAGCGTCAGGAATCGGCTGCGAC
CTATGAGGCTGCGGGGCGGACCGATTTATCAACCCAGGAACGTGAAGAAA
TCAGGATCATTGAGACTTTCCTGCCGCCCCAGATGAGTAATGAAGAAATT
CAGTCCGCATGCAGGAAAGTAGTATCGGAAGTGGAAACCCCAGGCCTGAA
AGATATGGGGAAAATCATGAATGTCCTGAAAGACCGCTATACGGGTCAGA
TGGATTTCAAAAAAGCCAGCGCGGAAGTCAAAGCACTGCTACAATAA
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