mRNA_P-wetherbeei_contig13847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13847.1.1
Unique NamemRNA_P-wetherbeei_contig13847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13847.1.1 vs. uniprot
Match: A0A835YPR6_9STRA (Polycystin cation channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPR6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.450e-10
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    7 GNLEIDPLRAVAPIMGPFLFVSFIILMVFVVLSMMFAVVAAAYETVIEQAEGRPKSDDPIVRDLKRVGVAAMAAAQRMPGLRALL 261
             ++++  LRAV P +GPFL+V+FI+LMV VVLSM+FAV++ A+E   E  EG     DP++RD+ R G   +  A R PGLR LL
Sbjct:  615 ASMDVARLRAVQPGLGPFLYVTFIVLMVMVVLSMIFAVISNAFEAYRE--EGAADPGDPMIRDMLRAGHKLIQLAYRTPGLRRLL 697
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BLAST of mRNA_P-wetherbeei_contig13847.1.1 vs. uniprot
Match: A0A835ZHP5_9STRA (Polycystin cation channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-6
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 VLGNLEIDPLRAVAPIMGPFLFVSFIILMVFVVLSMMFAVVAAAYETVIEQAEGRPKSDDPIVRDLKRVGVAA 219
            VLGN ++D LR   P++G  LF+SFI LM FVV+SM  A V  AYETV E         DP+ +DLKR+  AA
Sbjct:  514 VLGNFDVDKLRDARPVIGTLLFLSFIFLMFFVVVSMFLATVDKAYETVREALGHLDGHLDPMAKDLKRLVFAA 586
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YPR6_9STRA2.450e-1049.41Polycystin cation channel-domain-containing protei... [more]
A0A835ZHP5_9STRA1.020e-650.68Polycystin cation channel-domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13847contigP-wetherbeei_contig13847:1..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1038
Hectar predicted targeting categorysignal peptide
Exons1
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.0830426-UTR-P-wetherbeei_contig13847:0..481683185999.0830426-UTR-P-wetherbeei_contig13847:0..48Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13847 1..48 +
1683185999.0983427-UTR-P-wetherbeei_contig13847:645..10381683185999.0983427-UTR-P-wetherbeei_contig13847:645..1038Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13847 646..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.090601-CDS-P-wetherbeei_contig13847:48..6451683185999.090601-CDS-P-wetherbeei_contig13847:48..645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13847 49..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13847.1.1prot_P-wetherbeei_contig13847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13847 49..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13847.1.1

>prot_P-wetherbeei_contig13847.1.1 ID=prot_P-wetherbeei_contig13847.1.1|Name=mRNA_P-wetherbeei_contig13847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=199bp
MGPFLFVSFIILMVFVVLSMMFAVVAAAYETVIEQAEGRPKSDDPIVRDL
KRVGVAAMAAAQRMPGLRALLIPPRPPPPPPPIAAEGPVGGGAGDADDGA
SPSSAANEVGARRRRGDSGGGGGVGEADSSLSSVLPPPPPALPPGELFMQ
ELQALEQHQRQLVCKLEGIILSARDAQRVHRERLRRERVRIDDGDDAT*
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mRNA from alignment at P-wetherbeei_contig13847:1..1038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13847.1.1 ID=mRNA_P-wetherbeei_contig13847.1.1|Name=mRNA_P-wetherbeei_contig13847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1038bp|location=Sequence derived from alignment at P-wetherbeei_contig13847:1..1038+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTCGGCAACCTCGAGATCGACCCGCTGCGGGCCGTCGCGCCCATCAT
GGGGCCTTTCCTCTTCGTCTCTTTCATTATTCTCATGGTCTTCGTCGTGC
TCTCGATGATGTTCGCCGTCGTCGCCGCCGCCTACGAGACCGTCATAGAG
CAAGCGGAGGGCCGTCCCAAGAGCGACGACCCGATCGTGCGAGACCTTAA
GCGCGTTGGGGTCGCCGCCATGGCGGCGGCGCAGCGGATGCCAGGGCTGC
GGGCGCTGCTGATACCGCCGCGACCGCCGCCGCCGCCGCCACCGATAGCG
GCGGAAGGGCCGGTAGGGGGCGGGGCGGGCGACGCTGACGACGGCGCATC
GCCTTCGTCGGCGGCAAACGAAGTCGGAGCGAGAAGAAGAAGAGGCGATA
GCGGCGGTGGCGGGGGCGTGGGAGAGGCAGATTCTTCGCTGTCGTCGGTG
CTGCCACCGCCGCCGCCCGCGCTGCCGCCGGGGGAACTGTTCATGCAGGA
GCTGCAGGCGCTGGAACAGCATCAGCGGCAGCTTGTGTGCAAGCTGGAGG
GCATCATCCTCTCGGCACGGGACGCGCAGCGGGTGCACCGCGAACGCTTG
CGGCGGGAGCGCGTCCGCATCGACGACGGCGATGACGCCACATAAAGAGC
GAGGTGATGGACTGGGCAGAAAGAAAGCGATTTATCAGGGACAAGCCGCG
GCGCTGCGAATGCGGGCAGAAGCCGGCAGGCCGGCTGGCACCGTAGCAAG
TAGAGCCCTCAAAAACTTTTACAGAGACTGTAACGACTGGAAGAAGAGAA
GGGTTCGATCAGCGGGCGGCAAGGAAGGTGGCTTGGTTGATGGCTTCGGA
AGAGCTTGGAGGCATCAGCGCGGAAAGAGGGGTGCCTTGAACCATTGGCT
CTTGGAACAAACACATTGCATTGAAGTAGCTTGATGACTCAAGCTCATCT
CTAAACACGGATTTCGCGTACGGCAAAGAACAGAACGAGCTACGGTGCAA
GACATGGTGACGTTTAAAAGAGTTCAACAAAATATTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13847:1..1038+

>mRNA_P-wetherbeei_contig13847.1.1 ID=mRNA_P-wetherbeei_contig13847.1.1|Name=mRNA_P-wetherbeei_contig13847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig13847:1..1038+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCTTTCCTCTTCGTCTCTTTCATTATTCTCATGGTCTTCGTCGT
GCTCTCGATGATGTTCGCCGTCGTCGCCGCCGCCTACGAGACCGTCATAG
AGCAAGCGGAGGGCCGTCCCAAGAGCGACGACCCGATCGTGCGAGACCTT
AAGCGCGTTGGGGTCGCCGCCATGGCGGCGGCGCAGCGGATGCCAGGGCT
GCGGGCGCTGCTGATACCGCCGCGACCGCCGCCGCCGCCGCCACCGATAG
CGGCGGAAGGGCCGGTAGGGGGCGGGGCGGGCGACGCTGACGACGGCGCA
TCGCCTTCGTCGGCGGCAAACGAAGTCGGAGCGAGAAGAAGAAGAGGCGA
TAGCGGCGGTGGCGGGGGCGTGGGAGAGGCAGATTCTTCGCTGTCGTCGG
TGCTGCCACCGCCGCCGCCCGCGCTGCCGCCGGGGGAACTGTTCATGCAG
GAGCTGCAGGCGCTGGAACAGCATCAGCGGCAGCTTGTGTGCAAGCTGGA
GGGCATCATCCTCTCGGCACGGGACGCGCAGCGGGTGCACCGCGAACGCT
TGCGGCGGGAGCGCGTCCGCATCGACGACGGCGATGACGCCACATAA
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