mRNA_P-wetherbeei_contig13838.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13838.2.1
Unique NamemRNA_P-wetherbeei_contig13838.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A6I3EV43_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=2 Tax=root TaxID=1 RepID=A0A6I3EV43_9ACTN)

HSP 1 Score: 251 bits (641), Expect = 6.730e-83
Identity = 118/155 (76.13%), Postives = 137/155 (88.39%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG VGLMG  ADAA+ AGGEVIGVITE L+ AEVAHQ LT LEVVP+MH+RKAR+ +LADGFVVLPGGFGTVDEFAE +TWNQLG+IAKPVVL DV+GFWGP+ +WM++AV++GFVRS+HR+LAQRA TVDE +ALATGP P   HKW+DR
Sbjct:   36 LVYGGGSVGLMGAAADAAMAAGGEVIGVITEQLMSAEVAHQGLTTLEVVPSMHDRKARLEELADGFVVLPGGFGTVDEFAEMLTWNQLGIIAKPVVLLDVNGFWGPLLEWMDKAVESGFVRSAHRMLAQRARTVDEAIALATGPAPVTPHKWLDR 190
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A7X9KN16_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KN16_9ACTN)

HSP 1 Score: 249 bits (636), Expect = 4.910e-82
Identity = 115/155 (74.19%), Postives = 137/155 (88.39%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LV+GGG VGLMG+ ADAAL AGGEVIGVITE LV AEVAH+ LTRLEVVPTMH+RKAR+++LADGFVV+PGGFGTVDEFAE +TWNQLG++AKPVVL D++GFW PM  WM++AV+ GFVR +HR+LAQRA +VDE +A+AT PVPD  HKW+DR
Sbjct:   41 LVFGGGRVGLMGLAADAALQAGGEVIGVITEQLVGAEVAHRELTRLEVVPTMHDRKARLSELADGFVVMPGGFGTVDEFAEMLTWNQLGIVAKPVVLLDIEGFWAPMLAWMDKAVECGFVRPAHRMLAQRAVSVDEAIAMATSPVPDTPHKWLDR 195
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A3C2B3T7_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B3T7_9ACTN)

HSP 1 Score: 247 bits (631), Expect = 1.900e-81
Identity = 118/155 (76.13%), Postives = 133/155 (85.81%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            +VYGGG VGLMGI ADAAL AGGEVIGVITE L+ AEV H+ LT LEVVPTMH+RKAR+ DLADGFVVLPGGFGTVDEFAE +TWNQLG++AKPVVL DVDGFW P+  WM+RAV  GFVR +HR+LAQRAHTVD+ +ALAT PVP   HKW+DR
Sbjct:   35 MVYGGGSVGLMGIAADAALAAGGEVIGVITEQLMGAEVGHRGLTELEVVPTMHDRKARLCDLADGFVVLPGGFGTVDEFAEMLTWNQLGIVAKPVVLLDVDGFWEPLLAWMDRAVDLGFVRPAHRVLAQRAHTVDDAIALATSPVPVTPHKWLDR 189
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A539E188_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E188_9ACTN)

HSP 1 Score: 230 bits (586), Expect = 2.670e-74
Identity = 104/155 (67.10%), Postives = 129/155 (83.23%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGGHVGLMG++ADAAL AGGEVIGVIT+ LV AEVAH+ L+ LEVVP MH+RKAR   L+DGF+ +PGGFGT++E  E +TWNQLG++ KPVV+ DVD +W  +FDWM+ AV +GFVR+SHR+LAQRAHTVDE +ALA  P P+  +KW+DR
Sbjct:   45 LVYGGGHVGLMGVIADAALGAGGEVIGVITDQLVSAEVAHRGLSSLEVVPDMHQRKARFEQLSDGFIAMPGGFGTIEETLELLTWNQLGIVRKPVVMLDVDQYWAGLFDWMDGAVSSGFVRTSHRMLAQRAHTVDEALALALAPSPETPNKWIDR 199
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A7W0R0X6_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R0X6_9ACTN)

HSP 1 Score: 225 bits (573), Expect = 1.190e-72
Identity = 105/155 (67.74%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG VGLMG++ADA L  GG V GVITE LVRAE+AH+ LT LEVV +MHERKARM++LA GF+ LPGGFGT+DE  E +TWNQLGL+AKPVV  DVDG++ P+F++ +RAV+A F+R +HR+LAQRA TVDE VA AT P PD  HKW+DR
Sbjct:   37 LVYGGGQVGLMGVVADAVLTGGGPVTGVITEGLVRAEIAHEGLTSLEVVGSMHERKARMSELASGFIALPGGFGTLDETLEILTWNQLGLVAKPVVFLDVDGYYTPLFEFFDRAVEANFIRGAHRMLAQRARTVDEAVAQATAPSPDTPHKWIDR 191
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A6J6BP42_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6BP42_9ZZZZ)

HSP 1 Score: 225 bits (573), Expect = 2.610e-72
Identity = 104/155 (67.10%), Postives = 126/155 (81.29%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG VGLMG++ADAAL AGGEVIGVIT+ LV AEVAH+ L+ LEVVP MH+RKAR   L+DGF+ LPGGFGTV+E  E +TWNQLG++ KPVVL DV+ +W  +FDWM+ AV AGFVR SHR++AQRAHT DE +ALA  P P+  +KW+DR
Sbjct:   45 LVYGGGQVGLMGVVADAALAAGGEVIGVITDQLVGAEVAHRGLSALEVVPDMHQRKARFEQLSDGFIALPGGFGTVEEVVELLTWNQLGIVRKPVVLLDVERYWSHVFDWMDHAVSAGFVRHSHRMMAQRAHTADEALALALAPAPETPNKWLDR 199
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A7V9DP70_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DP70_9ACTN)

HSP 1 Score: 218 bits (554), Expect = 1.120e-69
Identity = 100/155 (64.52%), Postives = 125/155 (80.65%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG VGLMG++ADAAL AGGEV GV+ E LVRAE+AHQ LT LE   +MH+RKARM +LADGF+ LPGGFGT+DE  E +TWNQLGL++KPV   DV+G++ P+  + +RAV+A FVR +HR+LAQRA +VDE ++LAT P PD  HKW+DR
Sbjct:   43 LVYGGGQVGLMGVMADAALAAGGEVTGVMPELLVRAEIAHQGLTTLETTTSMHQRKARMAELADGFIALPGGFGTLDEVLEVLTWNQLGLLSKPVAFLDVEGYFSPLLSFFDRAVEANFVRGAHRMLAQRARSVDEAISLATAPAPDTPHKWLDR 197
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A7W1HI84_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HI84_9ACTN)

HSP 1 Score: 200 bits (508), Expect = 1.030e-62
Identity = 98/155 (63.23%), Postives = 114/155 (73.55%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG VGLMG++ADA L AGG+V GVIT HLV AE+AH  +  L VV TMHERKA M DLADG V LPGGFGT+DE  E +TWNQLGL+AKPVV  D  GF+G +F + + AV AGFVR  HR LA++A T  E + LAT P P   HKW+DR
Sbjct:   37 LVYGGGRVGLMGVIADAVLAAGGDVTGVITSHLVGAEIAHTGVGELHVVETMHERKALMTDLADGLVALPGGFGTLDEVLEMLTWNQLGLVAKPVVFLDTGGFYGELFAFFDHAVAAGFVRDIHRDLARQALTPAEAIDLATAPPPPTPHKWIDR 191
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A6I3WVF7_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=2 Tax=root TaxID=1 RepID=A0A6I3WVF7_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 3.070e-60
Identity = 95/155 (61.29%), Postives = 112/155 (72.26%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR 465
            LVYGGG +GLMG +ADA L AGG VIGVI E LVRAEV H  L++LEV   MH RKARM +LAD F+ LPGGFGT +E  E +TWNQLG I+KPVV+ DVDGF+ PM +  + AV AGFVR+ H  LAQRA TV++ +A AT P P    KW  R
Sbjct:   43 LVYGGGKLGLMGAVADAVLGAGGHVIGVIPEVLVRAEVGHTGLSQLEVAEDMHTRKARMAELADAFIALPGGFGTFEELLEVLTWNQLGFISKPVVMLDVDGFYAPMLEMFQHAVSAGFVRAEHAALAQRATTVEQALAFATAPAPPTVSKWDGR 197
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BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Match: A0A6N2DPP4_9ACTN (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DPP4_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 1.260e-58
Identity = 94/155 (60.65%), Postives = 115/155 (74.19%), Query Frame = 1 
Query:    1 LVYGGGHVGLMGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMNDLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDWMERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPD-VGHKWVD 462
            LV+GGG VGLMG+LADA L+AGGEVIGV+  HL+  EV H  LTRLEV  +MHERKARM +LADG + LPGGFGT +E  E +TWNQLGL+A PVV  DV  F+  +  +++ AV+AGFVR +HR LAQRA  VD+ +A A  P P   GHKW+D
Sbjct:   50 LVFGGGRVGLMGVLADAVLDAGGEVIGVMPGHLIDREVGHTGLTRLEVTRSMHERKARMAELADGVIALPGGFGTFEEVLEVLTWNQLGLLALPVVFLDVGDFYASLLGFLDGAVEAGFVRPAHRALAQRATDVDDALARALAPPPGGSGHKWID 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13838.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EV43_9ACTN6.730e-8376.13Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A7X9KN16_9ACTN4.910e-8274.19Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A3C2B3T7_9ACTN1.900e-8176.13Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A539E188_9ACTN2.670e-7467.10Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A7W0R0X6_9ACTN1.190e-7267.74Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A6J6BP42_9ZZZZ2.610e-7267.10Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A7V9DP70_9ACTN1.120e-6964.52Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A7W1HI84_9ACTN1.030e-6263.23Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A6I3WVF7_9ACTN3.070e-6061.29Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A6N2DPP4_9ACTN1.260e-5860.65Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13838contigP-wetherbeei_contig13838:1322..1786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1229780.BN381_810012
Preferred nameyvdD
PFAMsAcetyltransf_1,Lysine_decarbox,NUDIX
Model size465
Max annot lvl201174|Actinobacteria
KEGG rclassRC00063,RC00318
KEGG koko:K06966
KEGG ReactionR00182,R00510
KEGG Pathwayko00230,ko00240,map00230,map00240
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.18e-51
EggNOG OGsCOG1611@1|root,COG1611@2|Bacteria,2GMM1@201174|Actinobacteria,3UWQI@52018|unclassified Actinobacteria (class)
EC3.2.2.10
DescriptionEvidence 4 Homologs of previously reported genes of
Cds size435
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.9313972-CDS-P-wetherbeei_contig13838:1321..17561683185998.9313972-CDS-P-wetherbeei_contig13838:1321..1756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13838 1322..1756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.9401214-UTR-P-wetherbeei_contig13838:1756..17861683185998.9401214-UTR-P-wetherbeei_contig13838:1756..1786Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13838 1757..1786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13838.2.1prot_P-wetherbeei_contig13838.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13838 1322..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13838.2.1

>prot_P-wetherbeei_contig13838.2.1 ID=prot_P-wetherbeei_contig13838.2.1|Name=mRNA_P-wetherbeei_contig13838.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MGILADAALNAGGEVIGVITEHLVRAEVAHQNLTRLEVVPTMHERKARMN
DLADGFVVLPGGFGTVDEFAEAVTWNQLGLIAKPVVLFDVDGFWGPMFDW
MERAVQAGFVRSSHRLLAQRAHTVDEVVALATGPVPDVGHKWVDR
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mRNA from alignment at P-wetherbeei_contig13838:1322..1786-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13838.2.1 ID=mRNA_P-wetherbeei_contig13838.2.1|Name=mRNA_P-wetherbeei_contig13838.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig13838:1322..1786- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCTACGGGGGCGGTCACGTCGGGTTGATGGGCATCCTCGCCGACGC
CGCGCTCAACGCCGGTGGCGAGGTGATCGGCGTGATCACCGAGCACCTGG
TGCGCGCCGAGGTGGCCCACCAGAACCTCACCCGCCTCGAAGTGGTGCCG
ACGATGCACGAGCGCAAAGCGCGGATGAACGACCTGGCCGACGGCTTCGT
CGTGCTCCCCGGTGGGTTCGGCACGGTCGACGAGTTCGCCGAGGCGGTCA
CCTGGAACCAGCTCGGTCTGATCGCCAAGCCCGTCGTGCTGTTCGACGTC
GACGGCTTCTGGGGTCCGATGTTCGACTGGATGGAGCGCGCCGTCCAGGC
CGGCTTCGTGCGCTCGTCGCACCGTCTCTTGGCCCAGCGTGCGCACACCG
TCGACGAAGTGGTGGCCTTGGCCACCGGCCCCGTCCCCGACGTCGGCCAC
AAGTGGGTCGACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13838:1322..1786-

>mRNA_P-wetherbeei_contig13838.2.1 ID=mRNA_P-wetherbeei_contig13838.2.1|Name=mRNA_P-wetherbeei_contig13838.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig13838:1322..1786- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATCCTCGCCGACGCCGCGCTCAACGCCGGTGGCGAGGTGATCGG
CGTGATCACCGAGCACCTGGTGCGCGCCGAGGTGGCCCACCAGAACCTCA
CCCGCCTCGAAGTGGTGCCGACGATGCACGAGCGCAAAGCGCGGATGAAC
GACCTGGCCGACGGCTTCGTCGTGCTCCCCGGTGGGTTCGGCACGGTCGA
CGAGTTCGCCGAGGCGGTCACCTGGAACCAGCTCGGTCTGATCGCCAAGC
CCGTCGTGCTGTTCGACGTCGACGGCTTCTGGGGTCCGATGTTCGACTGG
ATGGAGCGCGCCGTCCAGGCCGGCTTCGTGCGCTCGTCGCACCGTCTCTT
GGCCCAGCGTGCGCACACCGTCGACGAAGTGGTGGCCTTGGCCACCGGCC
CCGTCCCCGACGTCGGCCACAAGTGGGTCGACCGC
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