mRNA_P-wetherbeei_contig10315.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10315.1.1
Unique NamemRNA_P-wetherbeei_contig10315.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A3C2BAQ2_9ACTN (Amino_oxidase domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2BAQ2_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 1.530e-23
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAV 198
            RVHTDWTNDP++LGCY    PG+   ARAAL  P+ RLW AGEHADEF GFMEGALRSG R AAA+
Sbjct:  347 RVHTDWTNDPYSLGCYVCAGPGQWTAARAALHRPYDRLWIAGEHADEFTGFMEGALRSGARVAAAL 412          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A6I3ESP3_9ACTN (NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3ESP3_9ACTN)

HSP 1 Score: 89.7 bits (221), Expect = 1.860e-19
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAVV 201
            RVHTDWTNDP++LG Y  F PG+   A++ L    GRLW AGEHAD F+GFMEGALRSG R AA V+
Sbjct:  344 RVHTDWTNDPYSLGTYTCFGPGQWRLAQSPLHSVHGRLWLAGEHADGFSGFMEGALRSGARVAAGVL 410          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A6I3WLX3_9ACTN (NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3WLX3_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-18
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTA 189
            RV TDWTND ++LGCYATF PGE+  A   L   +GR+  AGEH D FAGFMEGALRSGRR A
Sbjct:  370 RVQTDWTNDRYSLGCYATFGPGELLQAWPLLQRRYGRMVLAGEHTDAFAGFMEGALRSGRRAA 432          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A3C1L357_9ACTN (Amino_oxidase domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L357_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 2.510e-18
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAVVA 204
            RV TDWTNDP +LG Y+ F PG+   A+ AL    GRLW AGEHAD FAGFMEGALRSG R AA + A
Sbjct:  351 RVVTDWTNDPCSLGTYSCFGPGQWLAAQTALHVVHGRLWLAGEHADGFAGFMEGALRSGARVAAKIAA 418          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A6I3C9D5_9ACTN (NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3C9D5_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 1.190e-16
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAV 198
            RV TDWTND ++LGCYATF P E   A   +   +GR+  AGEH D  AGFMEGALRSGRR AA V
Sbjct:  360 RVQTDWTNDRYSLGCYATFGPNEFMRAWPLMQRRYGRMVLAGEHTDACAGFMEGALRSGRRAAALV 425          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A7K1B109_9ACTN (NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=A0A7K1B109_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-11
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAVV 201
            RV  DWT+D  +LG YATF  G++  A   L    GR+  AGEH DE+ G+MEGALRSG R A  ++
Sbjct:  359 RVVADWTDDEHSLGAYATFGVGQLVPAWPLLRRRHGRMILAGEHTDEWCGYMEGALRSGARAARTIL 425          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A6N8ZMI3_9GAMM (FAD-dependent oxidoreductase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8ZMI3_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 2.390e-10
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   16 WTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAGFMEGALRSGRRTAAAVVAAHS 213
            W  DPFA G YA + PG +A++RAALA P GRL  AGEH  +  G +EGA+RSG R A+A++ A S
Sbjct:  409 WGADPFAGGAYAAWPPGRVAESRAALARPAGRLRFAGEHVADAPG-IEGAIRSGERAASAILEAPS 473          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: UPI001C04638C (flavin monoamine oxidase family protein n=1 Tax=Pimelobacter sp. 30-1 TaxID=2004991 RepID=UPI001C04638C)

HSP 1 Score: 63.9 bits (154), Expect = 3.260e-10
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 VHTDWTNDPFALGCY-ATFAPGEMADARAALAEPFGRL-WPAGEHADEFAGFMEGALRSGRRTAAAVVAA 207
            +  DW+ + F+ GCY A F+PG       AL EP GR+ W   E+A E++G+MEGA+RSGR TA AV+AA
Sbjct:  380 LEKDWSTEEFSRGCYGAHFSPGTWTSYGPALREPVGRIHWAGAEYAVEWSGYMEGAVRSGRATADAVLAA 449          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: UPI001FF1C28E (FAD-dependent oxidoreductase n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF1C28E)

HSP 1 Score: 62.8 bits (151), Expect = 8.300e-10
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   16 WTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHAD-EFAGFMEGALRSGRRTAAAV 198
            W  +P+ALG Y  F PG+      AL +P GR+W AGEH   E+ G+MEGA+RSG+R A A+
Sbjct:  376 WGREPWALGSYTCFQPGQWTTLAGALTQPVGRVWFAGEHTGGEWQGYMEGAVRSGQRLAQAL 437          
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Match: A0A316TMI3_9ACTN (Oxidoreductase n=1 Tax=Nocardioides silvaticus TaxID=2201891 RepID=A0A316TMI3_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.550e-9
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    4 VHTDWTNDPFALGCY-ATFAPGEMADARAALAEPFGRL-WPAGEHADEFAGFMEGALRSGRRTAAAVVA 204
            V  DW+ + F+ GCY A FAPG       AL  P GR+ W   EHA E++G+MEGA+RSGR TAA V+A
Sbjct:  380 VEKDWSAEEFSRGCYGAHFAPGVWTAHGDALRPPVGRVHWAGAEHAVEWSGYMEGAVRSGRVTAAEVLA 448          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10315.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2BAQ2_9ACTN1.530e-2371.21Amino_oxidase domain-containing protein n=1 Tax=Ac... [more]
A0A6I3ESP3_9ACTN1.860e-1964.18NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=... [more]
A0A6I3WLX3_9ACTN1.030e-1866.67NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=... [more]
A0A3C1L357_9ACTN2.510e-1864.71Amino_oxidase domain-containing protein n=2 Tax=Ac... [more]
A0A6I3C9D5_9ACTN1.190e-1662.12NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=... [more]
A0A7K1B109_9ACTN1.410e-1150.75NAD(P)-binding protein n=2 Tax=root TaxID=1 RepID=... [more]
A0A6N8ZMI3_9GAMM2.390e-1054.55FAD-dependent oxidoreductase n=3 Tax=Gammaproteoba... [more]
UPI001C04638C3.260e-1050.00flavin monoamine oxidase family protein n=1 Tax=Pi... [more]
UPI001FF1C28E8.300e-1050.00FAD-dependent oxidoreductase n=1 Tax=Synechococcus... [more]
A0A316TMI3_9ACTN1.550e-952.17Oxidoreductase n=1 Tax=Nocardioides silvaticus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10315contigP-wetherbeei_contig10315:1..216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1173264.KI913949_gene4108
PFAMsAmino_oxidase
Model size216
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713
KEGG koko:K00274
KEGG ReactionR02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354
KEGG Pathwayko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00135
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-11
EggNOG OGsCOG1231@1|root,COG1231@2|Bacteria,1G3YC@1117|Cyanobacteria,1HCPQ@1150|Oscillatoriales
EC1.4.3.4
DescriptionFlavin containing amine oxidoreductase
Cds size216
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.2110333-CDS-P-wetherbeei_contig10315:0..2161683185863.2110333-CDS-P-wetherbeei_contig10315:0..216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10315 1..216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10315.1.1prot_P-wetherbeei_contig10315.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10315 1..216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10315.1.1

>prot_P-wetherbeei_contig10315.1.1 ID=prot_P-wetherbeei_contig10315.1.1|Name=mRNA_P-wetherbeei_contig10315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
RVHTDWTNDPFALGCYATFAPGEMADARAALAEPFGRLWPAGEHADEFAG
FMEGALRSGRRTAAAVVAAHS*
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mRNA from alignment at P-wetherbeei_contig10315:1..216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10315.1.1 ID=mRNA_P-wetherbeei_contig10315.1.1|Name=mRNA_P-wetherbeei_contig10315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig10315:1..216+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGTGCACACCGACTGGACGAACGACCCGTTCGCGCTCGGCTGCTACGC GACGTTCGCGCCAGGTGAGATGGCCGACGCACGCGCCGCCCTGGCCGAGC CGTTCGGTCGCCTGTGGCCGGCCGGCGAGCACGCCGACGAGTTCGCCGGG TTCATGGAGGGCGCGCTGCGCAGCGGTCGACGCACCGCCGCCGCCGTCGT CGCCGCCCACTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10315:1..216+

>mRNA_P-wetherbeei_contig10315.1.1 ID=mRNA_P-wetherbeei_contig10315.1.1|Name=mRNA_P-wetherbeei_contig10315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig10315:1..216+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGTGCACACCGACTGGACGAACGACCCGTTCGCGCTCGGCTGCTACGC
GACGTTCGCGCCAGGTGAGATGGCCGACGCACGCGCCGCCCTGGCCGAGC
CGTTCGGTCGCCTGTGGCCGGCCGGCGAGCACGCCGACGAGTTCGCCGGG
TTCATGGAGGGCGCGCTGCGCAGCGGTCGACGCACCGCCGCCGCCGTCGT
CGCCGCCCACTCCTGA
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