mRNA_P-wetherbeei_contig13817.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13817.1.1
Unique NamemRNA_P-wetherbeei_contig13817.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: A0A850SSH8_9PROT (Outer membrane beta-barrel protein n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SSH8_9PROT)

HSP 1 Score: 154 bits (390), Expect = 7.150e-43
Identity = 94/243 (38.68%), Postives = 135/243 (55.56%), Query Frame = 1
Query:   28 AAIALGSAASASAQAPEHRFYASVHAGQDVQDDESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITG----GTAPSLANIAIPTSEPTWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNL---------TAGALDSVNDVSDKSSVSVMAGLRYSF 717
            AA+ +G+AASA     +  FY    AG    +D  + GFN AN  R  +   ++G  Y  A+G    +  +GR R + E S R AD+D + LN V +T+  GS V   AA++N  YDTP +FD +RF AGAG G+A +DH++RY +      G+ P    IAIP+SE T++YQL GG ++ LT   SL  + R+V+ G+   +RF L         T G LDS+ + S     ++  GLRY F
Sbjct:   14 AALMMGAAASAD----DGGFYVGAFAGLHFPEDVQLNGFNAANQVRAIEARLDNGTVYGAAVGYAGRDHSFGRWRAEVETSFRSADLDGLALNGVDRTVLDGSEVSTVAALVNVAYDTPKFFDRLRFSAGAGFGLAVIDHEIRYLVANAAAIGSIPGNLQIAIPSSEATYAYQLLGGADFALTNRLSLTTEFRYVKQGDVDAERFILNSIINGVATTNGTLDSILE-SKHDFKALTFGLRYRF 251          
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: A0A832DWK1_9PROT (OMP_b-brl domain-containing protein n=1 Tax=Caulobacterales bacterium TaxID=2282150 RepID=A0A832DWK1_9PROT)

HSP 1 Score: 152 bits (384), Expect = 7.620e-42
Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 1
Query:   16 LSTVAAIALGSAASASAQAPEHRFYASVHAGQDVQDDESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITGGTAPSLANIAIPTS-EPTWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRYSF 717
            L ++A  A   A + SA A + RFY    AG    +++S  G N+A  PR  D   +DG    + LG+ A EG WGR+R +AE +HR++DV+ + LN VQ+ + QG   + T  ++N  YDTP +   +R   GAG+G A+ D+ +RY +    A +   I IPTS     +YQ   G +Y LTP W L AD R++   +HQI+RFN TAG LDSV D + +SS   + G RY F
Sbjct:   35 LLSIALCATACACATSALAQDDRFYVGGFAGGHFGEEQSFSGANLAGAPRQIDAPQDDGAVAGLVLGMVATEGGWGRLRVEAEFAHRQSDVERLSLNGVQRELLQGESSVSTQ-LVNLLYDTPQW-RKLRGTLGAGIGAASYDYDIRYNV----AAAGPTINIPTSVSGKLAYQAIIGVQYALTPTWELSADYRYLWGDDHQIERFNQTAGTLDSVLDATYESSAFTV-GARYRF 262          
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: W0A741_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonas sanxanigenens TaxID=397260 RepID=W0A741_9SPHN)

HSP 1 Score: 126 bits (316), Expect = 3.300e-32
Identity = 76/223 (34.08%), Postives = 120/223 (53.81%), Query Frame = 1
Query:   52 ASASAQAPEHRFYASVHAGQDVQDDESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITGGTAPSLANIAIPTSEP-TWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRYSF 717
            A+A A+A + + Y ++  G    +D++ RG  +  LPR  +   +DG      LG    +  WGR+R +AE++  +  V  + LN  ++ + QG   + T  M N  YDTP   + VRF AG G G AN+D+ ++Y +    A +   I IPT++    + Q  GG    +T  ++L ADVR++    HQ++RFN +AG LDS       S+ +V AG+RY F
Sbjct:    2 AAAPARAEDGQIYGAIFVGDRFGEDQTFRGETLTGLPRVIESPTKDGVIGGAVLGAVVKDAGWGRIRAEAEIAASKNSVSRLILNGQERELLQGRKSV-TTVMANLIYDTPKLLERVRFSAGGGFGAANIDYNIQYNV----AAAGPTILIPTNQSGRLALQAIGGVSVDITERFALTADVRYLHVDTHQVERFNQSAGTLDSTLKAKYHST-AVTAGVRYFF 218          
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: A0A1G5TTB3_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonas sp. NFR15 TaxID=1566282 RepID=A0A1G5TTB3_9SPHN)

HSP 1 Score: 121 bits (303), Expect = 4.910e-30
Identity = 76/214 (35.51%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   73 PEHRFYASVHAGQDVQDDESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITGGTAPSLANIAIPTS-EPTWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRY 711
            PE RFY     G      ++  G N+   PR  +   +      V +G  A +GDWGRVR + ELS  +  +  + LNNV++ + +G   + T+ M+N  YDTP   + VR  AG GVG A++D+ +RY ++  + P+   I IPTS     ++Q  GG    L     L  DVR++    HQ++RFN TAG LDSV       S++  AG R+
Sbjct:   31 PEKRFYVGGFLGDRFGSGQTFSGANITGQPRVIETPTKADITGGVMIGAVAAQGDWGRVRVEGELSASQNSIKRLVLNNVRRELLEGRKSI-TSEMVNVMYDTPKIANLVRLSAGGGVGNASIDYDIRYNVSA-SGPA---INIPTSVSGHLAWQAIGGASVALGRRVELTTDVRYLRVSEHQVERFNATAGTLDSVLGTR-YHSLAATAGFRF 238          
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: A0A2U0SGV9_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonas pokkalii TaxID=2175090 RepID=A0A2U0SGV9_9SPHN)

HSP 1 Score: 113 bits (283), Expect = 3.020e-27
Identity = 74/199 (37.19%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  124 DESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITGGTAPSLANIAIPTS-EPTWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRYSF 717
            ++++RG   A LPR  +   +DG    + LG  A  GDWGR R +AE S     +  + LN  Q+T+ +GS  + T  M+N  YDTP   + +RF  GAGVG   +D+  RY +    A +   I IPTS     + Q   G    L     L  DVR+     HQ++RFN TAG LDSV      S+V   AG R+ F
Sbjct:   32 EQTLRGATPAGLPRVIETDAKDGLTGGLVLGAVAATGDWGRARVEAEFSASRNTLKRLNLNGQQRTLLEGSRSV-TTEMVNILYDTPRIAERLRFTLGAGVGHGAIDYDTRYLV----AAAGPEINIPTSVSGKIALQGIAGASVALGGGLELTTDVRYSRIARHQVERFNATAGTLDSVLSAR-YSNVVATAGFRFFF 224          
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Match: A0A7X6BCK1_9SPHN (Opacity protein-like surface antigen n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A7X6BCK1_9SPHN)

HSP 1 Score: 114 bits (284), Expect = 3.220e-27
Identity = 73/199 (36.68%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  124 DESIRGFNVANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIFLNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQVRYRITGGTAPSLANIAIPTS-EPTWSYQLAGGGEYILTPNWSLLADVRFVEFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRYSF 717
            ++++RG   A LPR  +   +DG    V LG  A  GDWGR R +AE S     +  + LN  Q+T+ +G   + T  M+N  YDTP   + +RF  GAG+G   +D+  RY +    A     I IPT+     + Q   G    L     L+ADVR+   G HQ++RFN TAG LDSV      S+V    G R+ F
Sbjct:   49 EQTLRGATPAGLPRVIETDAKDGLTGGVVLGAVAATGDWGRARVEAEFSASRNTLKRLDLNGQQRTLLEGRRSV-TTEMVNLIYDTPRIAERLRFSLGAGIGHGAIDYDTRYLV----AADGPAINIPTNVSGKVALQGIAGASVALGGGLELVADVRYARIGRHQVERFNATAGTLDSVLSTR-YSNVIATGGFRFFF 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13817.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A850SSH8_9PROT7.150e-4338.68Outer membrane beta-barrel protein n=1 Tax=Parvula... [more]
A0A832DWK1_9PROT7.620e-4240.43OMP_b-brl domain-containing protein n=1 Tax=Caulob... [more]
W0A741_9SPHN3.300e-3234.08Uncharacterized protein n=2 Tax=Sphingomonas sanxa... [more]
A0A1G5TTB3_9SPHN4.910e-3035.51Uncharacterized protein n=2 Tax=Sphingomonas sp. N... [more]
A0A2U0SGV9_9SPHN3.020e-2737.19Uncharacterized protein n=2 Tax=Sphingomonas pokka... [more]
A0A7X6BCK1_9SPHN3.220e-2736.68Opacity protein-like surface antigen n=3 Tax=Sphin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13817contigP-wetherbeei_contig13817:675..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog509190.Cseg_3070
PFAMsAlginate_exp,OMP_b-brl,Surface_Ag_2
Model size720
Max annot lvl2|Bacteria
KEGG koko:K12980
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.46e-40
EggNOG OGsCOG3637@1|root,COG3637@2|Bacteria
DescriptionHas lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
Cds size720
COG categoryM
BRITEko00000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.521823-CDS-P-wetherbeei_contig13817:674..13941683185998.521823-CDS-P-wetherbeei_contig13817:674..1394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13817 675..1394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13817.1.1prot_P-wetherbeei_contig13817.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13817 675..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13817.1.1

>prot_P-wetherbeei_contig13817.1.1 ID=prot_P-wetherbeei_contig13817.1.1|Name=mRNA_P-wetherbeei_contig13817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MRLSILSTVAAIALGSAASASAQAPEHRFYASVHAGQDVQDDESIRGFNV
ANLPRNNDLTFEDGRAYAVALGVNAFEGDWGRVRFDAELSHREADVDTIF
LNNVQQTIRQGSHVLMTAAMLNAYYDTPVYFDHVRFYAGAGVGIANVDHQ
VRYRITGGTAPSLANIAIPTSEPTWSYQLAGGGEYILTPNWSLLADVRFV
EFGNHQIQRFNLTAGALDSVNDVSDKSSVSVMAGLRYSF*
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mRNA from alignment at P-wetherbeei_contig13817:675..1394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13817.1.1 ID=mRNA_P-wetherbeei_contig13817.1.1|Name=mRNA_P-wetherbeei_contig13817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig13817:675..1394+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTTGTCAATCCTTTCCACCGTTGCCGCGATCGCTCTGGGGAGCGC CGCGTCAGCCAGCGCCCAGGCGCCCGAGCATCGCTTTTACGCGTCTGTTC ACGCCGGTCAGGATGTGCAGGACGACGAATCCATTCGCGGCTTCAACGTC GCGAACCTGCCTCGCAACAATGACCTGACCTTTGAAGATGGCCGCGCCTA CGCAGTAGCGCTGGGCGTCAACGCGTTTGAAGGCGACTGGGGCCGCGTCC GGTTTGACGCCGAGCTGTCACACCGCGAGGCGGACGTCGATACGATATTC CTCAACAACGTCCAGCAGACCATCCGGCAGGGCTCCCACGTCCTGATGAC AGCCGCAATGCTCAACGCGTACTACGACACGCCCGTATACTTCGATCACG TCCGCTTCTATGCCGGCGCCGGCGTTGGCATCGCCAACGTCGACCATCAG GTGCGCTACCGGATCACGGGCGGGACAGCCCCCTCTCTCGCCAACATCGC GATCCCGACATCGGAGCCAACCTGGTCCTACCAGCTTGCCGGTGGCGGCG AATACATCCTGACGCCGAACTGGTCGCTCCTTGCCGATGTGCGCTTCGTC GAGTTCGGCAATCACCAGATCCAGCGCTTCAATCTCACCGCTGGCGCGCT CGACAGCGTGAACGACGTCTCCGACAAGTCGAGCGTCTCCGTCATGGCCG GACTTCGCTACTCGTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13817:675..1394+

>mRNA_P-wetherbeei_contig13817.1.1 ID=mRNA_P-wetherbeei_contig13817.1.1|Name=mRNA_P-wetherbeei_contig13817.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig13817:675..1394+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTTGTCAATCCTTTCCACCGTTGCCGCGATCGCTCTGGGGAGCGC
CGCGTCAGCCAGCGCCCAGGCGCCCGAGCATCGCTTTTACGCGTCTGTTC
ACGCCGGTCAGGATGTGCAGGACGACGAATCCATTCGCGGCTTCAACGTC
GCGAACCTGCCTCGCAACAATGACCTGACCTTTGAAGATGGCCGCGCCTA
CGCAGTAGCGCTGGGCGTCAACGCGTTTGAAGGCGACTGGGGCCGCGTCC
GGTTTGACGCCGAGCTGTCACACCGCGAGGCGGACGTCGATACGATATTC
CTCAACAACGTCCAGCAGACCATCCGGCAGGGCTCCCACGTCCTGATGAC
AGCCGCAATGCTCAACGCGTACTACGACACGCCCGTATACTTCGATCACG
TCCGCTTCTATGCCGGCGCCGGCGTTGGCATCGCCAACGTCGACCATCAG
GTGCGCTACCGGATCACGGGCGGGACAGCCCCCTCTCTCGCCAACATCGC
GATCCCGACATCGGAGCCAACCTGGTCCTACCAGCTTGCCGGTGGCGGCG
AATACATCCTGACGCCGAACTGGTCGCTCCTTGCCGATGTGCGCTTCGTC
GAGTTCGGCAATCACCAGATCCAGCGCTTCAATCTCACCGCTGGCGCGCT
CGACAGCGTGAACGACGTCTCCGACAAGTCGAGCGTCTCCGTCATGGCCG
GACTTCGCTACTCGTTCTGA
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