mRNA_P-wetherbeei_contig10312.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10312.1.1
Unique NamemRNA_P-wetherbeei_contig10312.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: D7FNQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.010e-25
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGD-------IELHS----QALHMVECHDGRTVALFKQLVRDSALAVDW 243
            LP++WVVDIAD  NDWF  TA  Y+D+  T+HVMVPD   P W GD       IE++S    Q + ++EC D R++ALFKQLVR+SA+ VDW
Sbjct:   56 LPIEWVVDIADKDNDWFLATAFGYNDMKQTLHVMVPDGINPTWTGDVAVNQLGIEINSFASLQTVRLLECCDKRSMALFKQLVRESAIEVDW 147
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: A0A7S3GRB9_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRB9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.330e-22
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELHSQALHMVECHDGRTVALFKQLVRDSALAVDW 243
            +P++WV+DIAD SN WF+GT   YDD    +HVMVPD   P ++G + L  + +H++EC DG++ ALF ++VRDS + V W
Sbjct:   50 VPIEWVIDIADESNGWFYGTGYHYDDTTQMLHVMVPDKENPTFDGQVLLDHRTVHLIECVDGKSDALFNKIVRDSVIKVKW 130
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: A0A7S0SQT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQT5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.930e-19
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELHSQALHMVECHDGRTVALFKQLVRDSALAVDW 243
            +PV+WV+DIAD ++ WF+ TA  +DD    +HVMVPD   P ++G + L  + +H+VEC D  T ALF ++VRD+ L V W
Sbjct:   56 IPVEWVIDIADETSGWFYATAYHFDDTKQELHVMVPDKHNPTFDGVVLLDYRTVHLVECIDSTTDALFNRIVRDNVLKVKW 136
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: F0XYC2_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYC2_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 4.170e-19
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELHSQALHMVECHDGRTVALFKQLVRDSALAVDW 243
            +PV+WVVD+AD + +WF  TA S+DD A+TV V +PD   P WEGD+ L  + +H++EC D  + AL+K +V  + + V W
Sbjct:   52 VPVEWVVDVADNNLNWFIATAYSFDDAASTVRVAIPDREEPDWEGDLPLDHRTIHLIECCDDASAALYKHVVAAATVPVAW 132
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: A0A7S4ECV5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECV5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.080e-16
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELHSQALHMVECHDGRTVALFKQLVRDSALAVDW 243
            + ++WVVD+AD + +WF  TA S D +   + V +PD   P WEGD+ L  + +H++EC D +++AL+KQ  R+ ++   W
Sbjct:   98 ITIEWVVDVADNNLNWFVATAYSIDTVRRVLRVAIPDRDEPTWEGDLPLDPKTIHLLECCDNKSMALYKQCCREGSIKCKW 178
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BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Match: A0A7S3K0G8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0G8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.570e-14
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELHSQALHMVECHDGRTVALFKQLV----RDSALAVDW 243
            L ++WVVD+AD + +WF  TA  YDD + T+ V +PD   P WEG + L  + +H++EC D  ++AL+K +     R+    V W
Sbjct:   62 LEIEWVVDVADHNLNWFIATAFLYDDESRTIKVAIPDRIEPQWEGYLPLDHRCIHLMECCDPNSIALYKYIASLWTREVCWRVSW 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10312.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNQ7_ECTSI1.010e-2553.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3GRB9_9STRA2.330e-2248.15Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S0SQT5_9STRA1.930e-1946.91Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
F0XYC2_AURAN4.170e-1945.68JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S4ECV5_9STRA2.080e-1638.27Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S3K0G8_9STRA5.570e-1438.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10312contigP-wetherbeei_contig10312:136..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009033274.1
PFAMsAminotran_3,C2,Exo_endo_phos,Kinesin
Model size243
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K20278
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.83e-20
EggNOG OGsCOG5411@1|root,KOG0565@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004620.1
EC3.1.3.36
Descriptionphosphatidylinositol dephosphorylation
Cds size243
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.1158385-CDS-P-wetherbeei_contig10312:135..2881683185863.1158385-CDS-P-wetherbeei_contig10312:135..288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10312 136..288 -
1683185863.126651-CDS-P-wetherbeei_contig10312:625..7151683185863.126651-CDS-P-wetherbeei_contig10312:625..715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10312 626..715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10312.1.1prot_P-wetherbeei_contig10312.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10312 136..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10312.1.1

>prot_P-wetherbeei_contig10312.1.1 ID=prot_P-wetherbeei_contig10312.1.1|Name=mRNA_P-wetherbeei_contig10312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
LPVDWVVDIADTSNDWFFGTAVSYDDIANTVHVMVPDAATPVWEGDIELH
SQALHMVECHDGRTVALFKQLVRDSALAVDW
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mRNA from alignment at P-wetherbeei_contig10312:136..715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10312.1.1 ID=mRNA_P-wetherbeei_contig10312.1.1|Name=mRNA_P-wetherbeei_contig10312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=580bp|location=Sequence derived from alignment at P-wetherbeei_contig10312:136..715- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGTGGACTGGGTGGTGGACATTGCGGACACGAGCAACGACTGGTT
CTTCGGAACGGCGGTTTCCTATGACGACATTGCCAACACGGTGCTTTTTG
TTTTCGTTTGCGTTCCGTTTCGATCTCTCTGTACTATCGTTTGGCGTGAT
GCGCTCTGCGTCCGTCTTGAGGCCTTCACAGCTTCGATTTCTTGTTTTGA
AAGGTCACAGGAGACTACCCTTTCACCCATGTCACTTCACTCCACACGAT
GGGGCGTGGCGGTCGACGCTGATGCCTGCCTTTCATGTCTTTGCTGTAAG
GGTTAGCTTGCCAGCGAACGAAAGCTTCATCTACCTATTTTGCCCGCCCT
TTCCGCCGCACGCATTCCCAATTTGTCTCCCGCCAAAAAACAACAAACTG
GAACGAAACGACCGACCGAAACGAAAGGTCCACGTGATGGTGCCGGACGC
GGCGACGCCGGTGTGGGAGGGCGACATCGAGCTGCACTCGCAGGCGCTGC
ACATGGTGGAGTGCCACGACGGCCGCACCGTCGCCCTCTTCAAGCAGCTG
GTGCGCGACTCCGCCCTGGCAGTCGACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10312:136..715-

>mRNA_P-wetherbeei_contig10312.1.1 ID=mRNA_P-wetherbeei_contig10312.1.1|Name=mRNA_P-wetherbeei_contig10312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig10312:136..715- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGTGGACTGGGTGGTGGACATTGCGGACACGAGCAACGACTGGTT
CTTCGGAACGGCGGTTTCCTATGACGACATTGCCAACACGGTCCACGTGA
TGGTGCCGGACGCGGCGACGCCGGTGTGGGAGGGCGACATCGAGCTGCAC
TCGCAGGCGCTGCACATGGTGGAGTGCCACGACGGCCGCACCGTCGCCCT
CTTCAAGCAGCTGGTGCGCGACTCCGCCCTGGCAGTCGACTGG
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