mRNA_P-wetherbeei_contig1378.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1378.3.1
Unique NamemRNA_P-wetherbeei_contig1378.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A6V1NVD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVD6_HETAK)

HSP 1 Score: 159 bits (401), Expect = 2.850e-45
Identity = 84/156 (53.85%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   22 DALSSLLGAWTMVVLGVRVLTFGPDPRYAAGFPTDVAHPAGCTRVAPTA---PCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLEK 480
            +A+ + L  W + +LGVR+ T  PDPRYA  FP DVA P GCTRVA      P      P V  G SV++VQ  ++ WI  QPRATIL+++ GY+HAQVLS LMGFPDNLGV+V     G     EVW QGELRVG+GDLGVN  RVK LL+ +++
Sbjct:  121 EAVGTPLSVWVVALLGVRLATLAPDPRYAGAFPADVAAPIGCTRVAGDFGRWPGGGNLRPAVVPGLSVDQVQQRIKGWILEQPRATILEEKEGYIHAQVLSNLMGFPDNLGVRVFRNAAGR---TEVWAQGELRVGQGDLGVNYARVKKLLEFIDE 273          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A835ZGQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGQ5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.680e-37
Identity = 83/170 (48.82%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   52 TMVVLGVRVLTFGPDPRYAAGFPTD----------------------------VAHPAGCTRVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLE 477
            T+V+L VRV+T  PD RY   FP                              +AHP+GCTRVAPT    S    P FK    E VQ + REW+  QPR  I +DEPGY+HAQ LS L GFPDNLG++  E  GG   G +VW QGELRVGEGDLGVN +RVKALL +L+
Sbjct:  116 TIVMLLVRVVTIRPDARYVH-FPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMPKFKSSPAE-VQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGG---GTQVWAQGELRVGEGDLGVNYKRVKALLLYLQ 280          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A0G4G6M2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G6M2_9ALVE)

HSP 1 Score: 117 bits (294), Expect = 4.640e-30
Identity = 69/160 (43.12%), Postives = 90/160 (56.25%), Query Frame = 1
Query:    1 AGLTPAADALSSLLGAWTMVVLGVRVLTFGPDPRYAAGFPTDVAHPAGCTRVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLEK 480
            AGL P    ++++LG W   +L VR+ +  P   +   FP  V HP G TRVAP      +  PPV+    V  +Q   +EWI+ QPR  I+ D+ GY++A  L+ LMGF DN  VK   + GG  +   VWVQ EL +GEGDLGVN  RV A L  L K
Sbjct:   56 AGLVPL---VTNVLGVWVFSLLVVRLTSRSPTKTWVEDFPQTVDHPRGATRVAPDFSSPKKLEPPVYDAP-VATLQKAAKEWIEQQPRTAIVTDKEGYIYAYFLTNLMGFRDNFAVKFESQAGGKTR---VWVQSELILGEGDLGVNYNRVNAFLSALGK 208          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A383VMS0_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VMS0_TETOB)

HSP 1 Score: 69.7 bits (169), Expect = 2.980e-11
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   16 AADALSSLLGAWTMVVLGVRVLTFGPDPRYAAGFPTDVAHPA--GCTRVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILK--------------DEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKG-VEVWVQGELRVGEGDLGVNARRVKALLDHLEKA 483
            AA +LS L G W ++++ VR  +  PD R++ GFP    +    GC+RVA   P R+    PV    ++      V +WIK QPR T+L                +   +HA+ +SLL GF D++ V++       D G V +  QG+LRVG GD+ VN +R  AL+  ++ A
Sbjct:   84 AAHSLSGL-GVWLLLLVLVRAAS--PDVRFS-GFPDACPYTKQLGCSRVAADNPHRNAGWEPVPLPTTLPAAASAVLQWIKQQPRTTVLAVHGPPSSAGAAAAVSQETAIHARFVSLLWGFADDVFVRLSCN---ADSGAVLLEAQGQLRVGVGDMEVNVQRNAALMAAMKAA 249          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A7J7PIX1_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIX1_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 2.350e-10
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   40 LGAWTMVVLGVRVLTFGPDPRYAAGFPT--DVAHPAGCTRVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPG------------------YMHAQVLSLLMGFPDNLGVKVVEKGGGTDKG-VEVWVQGELRVGEGDLGVNARRVKALLDHLE 477
            +  W ++++ VRV +  PD + + GFP     +   GC+RVA   P R+    PV    ++      V EWI+ QPRAT+L    G                    HA+ +SLL GF D++ V++       D G V +  QG+LRVG GD+ VN +R  ALL  +E
Sbjct:   67 MAVWLLLLVLVRVAS--PDVQ-SKGFPDACPFSKQLGCSRVARDKPHRAAGLRPVEMPTTLPAATSAVLEWIRQQPRATVLTVHRGPSGTDSAASGGQEAAQQAVAHARFVSLLWGFADDVFVRLSCD---ADNGAVLLEAQGQLRVGVGDMEVNVKRNAALLAAME 227          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A7Y3C2X7_9BACT (DUF1499 domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3C2X7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.830e-8
Identity = 46/140 (32.86%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   64 LGVRVLTFGPDPRYAAGFPTDVAHPAGCTRVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLEKA 483
            LG R  T  P P       T + HP G   +  T          V   + + R++G+V    ++ PR  +++ E GY+ A+  SL+  F D+L + V   G       E+ V+   RVGEGDLG NARRV+ L + L +A
Sbjct:   24 LGPRDGTLAPCPGSPNCVHTGMRHPDGTAGLYLTGN--------VTGAELMTRLEGVV----ESMPRTAVVESESGYLRAEATSLVFRFVDDLELLVGVDG-------ELIVRSASRVGEGDLGANARRVENLRERLTEA 144          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: D7G2M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M0_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.430e-7
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   16 AADALSSLLGAWTMVVLGVRVLTFGPDPRYAAGFPTDVAHPAGCTRVAPTAPCRSRNPPPVFKGKSVERVQ 228
            AA    S+L   T+ +LGVR  T GPD RY   FPT +AHP GCTRVA T   +    P  FK  SV+ VQ
Sbjct:   53 AAGVAGSVLTFLTVTMLGVRTYTAGPDTRYIDSFPTGIAHPEGCTRVAETGGNKGIAVP-TFKA-SVDEVQ 121          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A2E9GNK7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9GNK7_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 2.350e-7
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1
Query:  220 RVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLEK 480
            R     R+ +   PR  ++ DEPGY+HA+  S LMGF D+L + +            + V+   R+G GDLGVN RRV+ L  +L K
Sbjct:   53 RAWAAARQAVLDLPRTELVVDEPGYLHAECRSALMGFVDDLELHL------RPDESRIEVRSASRLGYGDLGVNRRRVEGLRTNLRK 133          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: A0A2P2DVN7_9LEPT (Uncharacterized protein n=1 Tax=Leptospira ryugenii TaxID=1917863 RepID=A0A2P2DVN7_9LEPT)

HSP 1 Score: 56.2 bits (134), Expect = 5.330e-7
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  199 FKGKSVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHLE 477
            FKG + + ++ L ++ I++ PRA I+  E  Y++A+  SLL  F D++   V EK        ++  +   R+G+GDLGVN +R++ALL  LE
Sbjct:   60 FKGDAKQAIENLKKK-IESYPRAEIITLESNYIYAEFTSLLFRFVDDVEFYVDEKN------KKLHFRSASRLGKGDLGVNRKRIEALLKDLE 145          
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Match: Q7V159_PROMP (Uncharacterized protein n=2 Tax=Prochlorococcus marinus TaxID=1219 RepID=Q7V159_PROMP)

HSP 1 Score: 53.1 bits (126), Expect = 5.770e-6
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  211 SVERVQGLVREWIKAQPRATILKDEPGYMHAQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARRVKALLDHL 474
            S+E+    V+E I+  PR+ I++ +  Y+HA+V S  M + D+L V  V +        ++ V+ E RVGEGDLGVN +RV  L   L
Sbjct:   49 SIEQPFKEVKEIIENTPRSVIVELDGDYLHAEVTSKWMKYVDDLEVSFVPESR------KLLVRSESRVGEGDLGVNQKRVDLLKSKL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1378.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6V1NVD6_HETAK2.850e-4553.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZGQ5_9STRA1.680e-3748.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G6M2_9ALVE4.640e-3043.13Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A383VMS0_TETOB2.980e-1134.10Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7PIX1_9CHLO2.350e-1033.53Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A7Y3C2X7_9BACT3.830e-832.86DUF1499 domain-containing protein n=2 Tax=Gemmatim... [more]
D7G2M0_ECTSI1.430e-749.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E9GNK7_9DELT2.350e-737.93Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2P2DVN7_9LEPT5.330e-736.56Uncharacterized protein n=1 Tax=Leptospira ryugeni... [more]
Q7V159_PROMP5.770e-638.64Uncharacterized protein n=2 Tax=Prochlorococcus ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1378contigP-wetherbeei_contig1378:3289..4438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog554065.XP_005843991.1
PFAMsARID,RBB1NT,Tudor-knot
Model size489
Max annot lvl2759|Eukaryota
KEGG koko:K07874,ko:K11763
KEGG Pathwayko05134,map05134
Hectar predicted targeting categorysignal peptide
Exons4
Evalue9.32e-12
EggNOG OGsKOG2744@1|root,KOG2744@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-11_002730.1
DescriptionDNA binding
Cds size489
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.1531696-CDS-P-wetherbeei_contig1378:3288..34161683185997.1531696-CDS-P-wetherbeei_contig1378:3288..3416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1378 3289..3416 +
1683185997.1638517-CDS-P-wetherbeei_contig1378:3624..37241683185997.1638517-CDS-P-wetherbeei_contig1378:3624..3724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1378 3625..3724 +
1683185997.1778665-CDS-P-wetherbeei_contig1378:3951..40291683185997.1778665-CDS-P-wetherbeei_contig1378:3951..4029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1378 3952..4029 +
1683185997.190412-CDS-P-wetherbeei_contig1378:4255..44381683185997.190412-CDS-P-wetherbeei_contig1378:4255..4438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1378 4256..4438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1378.3.1prot_P-wetherbeei_contig1378.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1378 3289..4438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1378.3.1

>prot_P-wetherbeei_contig1378.3.1 ID=prot_P-wetherbeei_contig1378.3.1|Name=mRNA_P-wetherbeei_contig1378.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
AGLTPAADALSSLLGAWTMVVLGVRVLTFGPDPRYAAGFPTDVAHPAGCT
RVAPTAPCRSRNPPPVFKGKSVERVQGLVREWIKAQPRATILKDEPGYMH
AQVLSLLMGFPDNLGVKVVEKGGGTDKGVEVWVQGELRVGEGDLGVNARR
VKALLDHLEKAQ*
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mRNA from alignment at P-wetherbeei_contig1378:3289..4438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1378.3.1 ID=mRNA_P-wetherbeei_contig1378.3.1|Name=mRNA_P-wetherbeei_contig1378.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at P-wetherbeei_contig1378:3289..4438+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGCTGACCCCTGCAGCCGACGCGCTGTCGAGCCTGTTGGGCGCGTG GACGATGGTGGTGCTGGGGGTGCGTGTCCTGACATTCGGGCCTGATCCCC GCTACGCCGCTGGATTCCCCACCGACGTGTGAGTTTTTATTCCTTTTTGT GGGTGTTAGTTTCGCTTCTGACGCGGTTCCTCTTAGGTGGCAGGTCTACA CAACGTTTCGCCAATGCGATGCGAAATGAATGTTGCTGTTTTTTTAACGT GTCAGGACATGACTCCGTCGTGTTTTTTTTCCGGAGGGTGGAGTGACCTC GCTTCGGCGCTTCTTTCGGTCTTGCAAAATTAGCAGGGCCCACCCCGCCG GCTGCACACGCGTGGCGCCGACGGCGCCGTGCCGGAGCCGCAACCCGCCA CCAGTATTCAAGGGCAAGAGCGTGGAAAGAGTGCAGGTCGGTAACATTCT TCAAATGCCGGTTCCCATGCCCTACTTTGAACGAACGCAGCAATTTATCT GCCTGTCTTGGTTCGTTTGTAATGTAAGCTTCCTGTACTGTTATCTGCAA AAGCGGTGTTAGCACGTCCGTTTCCTTCAAACCATGGTAGTTGCGGCGGC TATGCTGCTGGGCAGCACAACGTGACTCATTCCCTTCCTTTTCGCTATCT GCTCCCATGACAGGGTCTTGTTCGCGAATGGATCAAGGCGCAGCCGCGGG CGACCATTCTGAAAGACGAACCAGGCTACATGCATGCACAGGTGAGTAAA AGCAGATTTAGGCTGTTTTCGATCTGTATTCGGCTCAGCATCGCAGCCGG TCCTATGTAGAGCGTCGCAGAAAGCGATCTCATCACCGCAATCAAACCTT TAGAAGCATAGCTGGCGAACATGAAGAAACACCGTAGTGCGATCCTTAAG GAAAAGGCATTTTCTGGCTGTCCTGTGCCCACCGCCCATTCCCCCCGCCA AAAACAACAACAACCAGGTGCTGTCGCTGCTGATGGGGTTCCCGGACAAC TTGGGCGTCAAGGTGGTGGAGAAGGGCGGCGGCACGGACAAGGGCGTCGA GGTGTGGGTGCAGGGGGAGCTGCGGGTCGGGGAGGGCGACCTCGGCGTCA ACGCGAGACGGGTCAAGGCGCTGCTCGACCATCTTGAAAAGGCCCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1378:3289..4438+

>mRNA_P-wetherbeei_contig1378.3.1 ID=mRNA_P-wetherbeei_contig1378.3.1|Name=mRNA_P-wetherbeei_contig1378.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig1378:3289..4438+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGCTGACCCCTGCAGCCGACGCGCTGTCGAGCCTGTTGGGCGCGTG
GACGATGGTGGTGCTGGGGGTGCGTGTCCTGACATTCGGGCCTGATCCCC
GCTACGCCGCTGGATTCCCCACCGACGTGGCCCACCCCGCCGGCTGCACA
CGCGTGGCGCCGACGGCGCCGTGCCGGAGCCGCAACCCGCCACCAGTATT
CAAGGGCAAGAGCGTGGAAAGAGTGCAGGGTCTTGTTCGCGAATGGATCA
AGGCGCAGCCGCGGGCGACCATTCTGAAAGACGAACCAGGCTACATGCAT
GCACAGGTGCTGTCGCTGCTGATGGGGTTCCCGGACAACTTGGGCGTCAA
GGTGGTGGAGAAGGGCGGCGGCACGGACAAGGGCGTCGAGGTGTGGGTGC
AGGGGGAGCTGCGGGTCGGGGAGGGCGACCTCGGCGTCAACGCGAGACGG
GTCAAGGCGCTGCTCGACCATCTTGAAAAGGCCCAGTGA
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