mRNA_P-wetherbeei_contig13767.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13767.1.1
Unique NamemRNA_P-wetherbeei_contig13767.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A7S2XUU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.250e-50
Identity = 80/108 (74.07%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEE 324
            +QQPNEVEE I++LK+NPGF +YVIMNNDGIVIKYENMEY TAVHHA LVLDL +K+KKY+RELFEPPDN++ESLRLRT +YEMI+AQH NFTL  LQ+ Q+A   +E
Sbjct:    3 SQQPNEVEEVIRELKKNPGFDAYVIMNNDGIVIKYENMEYKTAVHHAHLVLDLCTKSKKYIRELFEPPDNEVESLRLRTADYEMIIAQHGNFTLTVLQKSQKAMSKKE 110          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A835ZE71_9STRA (Robl_LC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE71_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.040e-50
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    7 QPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEEGRPGEE 342
            QPNEVEE IK+LK+NPGFS+YV+MNNDGIVIKYE+M Y TAVHHA+LVLDL +K KKYMRE+FEPPDN++ESLRLRT E+EMIVAQHENFTLV +Q D +     E +  EE
Sbjct:   10 QPNEVEEVIKELKKNPGFSAYVVMNNDGIVIKYESMSYQTAVHHAALVLDLVAKGKKYMREMFEPPDNEVESLRLRTEEHEMIVAQHENFTLVVIQEDPKWKLKREAQEAEE 121          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: D8LQT2_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT2_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.350e-48
Identity = 79/100 (79.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query:    1 TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRD 300
            +QQ NEVEE IK+LK NPGFS+YVIMNNDGIVIKYE+MEY  AVHHA+LVLDL SK+KKYMRELFEPPDND+ESLRLRT E+EMI+A HE+FTLV +Q+D
Sbjct:    3 SQQVNEVEEVIKELKTNPGFSAYVIMNNDGIVIKYESMEYRAAVHHAALVLDLASKSKKYMRELFEPPDNDVESLRLRTGEHEMIIALHESFTLVVVQQD 102          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A6V1PEV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PEV3_HETAK)

HSP 1 Score: 159 bits (402), Expect = 3.520e-48
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    1 TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEEGRPGEEGEDKGSKEA 369
            +QQPNEVEE IK+LK+NPGF  YV+MNNDGIVIK ENMEY TAVHHA LVLDL +K++KYMR+L +PPDN++ES+RLRT +YEMI+AQH+NFTLV +Q+  RA       P EE ED+  +EA
Sbjct:    3 SQQPNEVEEVIKELKQNPGFDGYVVMNNDGIVIKCENMEYKTAVHHAHLVLDLCAKSRKYMRDLLDPPDNEVESIRLRTIDYEMIIAQHDNFTLVVIQKSHRAMNM----PVEEEEDEKKEEA 121          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A7S1XSZ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSZ1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.210e-37
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    1 TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEEGRPGEEGED 351
            +QQ NE EE IK+LK  PGF SY+I+NNDGIVIK+ENM+Y +A+  A LVLDL +K+KKY+RELFE PDN++ESLRLR+  +E+IVAQH +FTLV  Q  Q     E  +P EE ED
Sbjct:    3 SQQVNEAEEVIKELKMVPGFHSYMILNNDGIVIKWENMQYRSAIQCAHLVLDLVAKSKKYIRELFEVPDNEVESLRLRSKNFELIVAQHGSFTLVVKQLSQ----LEMAKPPEEEED 115          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A7S2SQX1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQX1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.490e-35
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    7 QPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQ 294
            Q NEV+E I++LK+N GF SYVI+ NDGIVIKYENM+   AV  A LVLDL +K+KKY++ELFEPPDND+ESLRL+T E+EMIVAQ+ +++LV +Q
Sbjct:    5 QTNEVDEVIRELKQNQGFKSYVIIRNDGIVIKYENMDVQKAVQTAHLVLDLCAKSKKYIKELFEPPDNDVESLRLKTLEFEMIVAQYGDYSLVVVQ 100          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A7S2C4Y6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4Y6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.450e-34
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    7 QPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEEGRPGEEGEDK 354
            QPN+V+E I DLK N G   YVI+NNDGIVIKYE M+Y  AV HA LVLDL +K+K Y R +FE P+N++ES+RL+T E+EMI++Q +NFTLV +Q D R    E+     EG++K
Sbjct:    5 QPNQVDEVIHDLKSNVGAKQYVILNNDGIVIKYEGMDYSRAVQHAYLVLDLCAKSKSYFRGMFEAPENEVESIRLKTNEFEMIISQIQNFTLVMIQ-DTRPQPEEDEEVAAEGDEK 119          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: A0A6S8XD14_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XD14_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.120e-33
Identity = 62/114 (54.39%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYEN----MEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRDQRAAKTEEGR 330
            +QQ NEVEE +K+L++NPGF +Y+I+NNDGIVIK++     M Y  AV ++  VLDL +K+K ++++LFEP DN +E++RLRT EYE+I AQ  NFTLV +Q D+  AKT+E R
Sbjct:    3 SQQINEVEEMLKELRKNPGFKAYLILNNDGIVIKWDQEGSPMPYQKAVQYSHHVLDLCNKSKAHIKDLFEPQDNQVENIRLRTDEYELIAAQQANFTLVVIQEDETKAKTKEKR 116          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: T0S3Y7_SAPDV (Robl_LC7 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0S3Y7_SAPDV)

HSP 1 Score: 119 bits (299), Expect = 1.950e-32
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   10 PNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQ 294
            PNEVEE IK LK  PGF SY++MNNDGIVIKYENMEY  AV HA  +L+L +++KKY+ +LF+  ++D+E LRLRT  +EMI+AQ+  FTLV LQ
Sbjct:    6 PNEVEETIKALKAKPGFFSYIVMNNDGIVIKYENMEYKMAVMHAYHILNLYARSKKYLTKLFDAAESDIECLRLRTKLHEMIIAQYAKFTLVVLQ 100          
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Match: H3H541_PHYRM (Robl_LC7 domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3H541_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 1.410e-31
Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   10 PNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLVLDLTSKAKKYMRELF-EPPDNDLESLRLRTPEYEMIVAQHENFTLVALQR 297
            PNE+EE IK LK  PGFSSY++MNNDGIV+KYEN+EY  A+ HA  VL L  + KK++++LF +P D+++E LRLRT  +EMI+AQH  FTLV LQ+
Sbjct:    6 PNEIEEVIKQLKSKPGFSSYILMNNDGIVVKYENVEYKEAIMHAYHVLSLYGRTKKHLQKLFPDPSDSEIEWLRLRTKMHEMIIAQHLRFTLVVLQQ 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13767.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XUU9_9STRA1.250e-5074.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZE71_9STRA3.040e-5072.32Robl_LC7 domain-containing protein n=1 Tax=Tribone... [more]
D8LQT2_ECTSI1.350e-4879.00Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6V1PEV3_HETAK3.520e-4865.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XSZ1_9STRA6.210e-3760.68Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SQX1_9STRA1.490e-3565.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C4Y6_9STRA2.450e-3456.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S8XD14_9STRA2.120e-3354.39Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
T0S3Y7_SAPDV1.950e-3262.11Robl_LC7 domain-containing protein n=4 Tax=Saprole... [more]
H3H541_PHYRM1.410e-3159.79Robl_LC7 domain-containing protein n=19 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13767contigP-wetherbeei_contig13767:50..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQT2
PFAMsRobl_LC7
Model size372
Max annot lvl2759|Eukaryota
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.22e-49
EggNOG OGsKOG4115@1|root,KOG4115@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-24_002180.1
Descriptiondynein intermediate chain binding
Cds size372
COG categoryJ
BRITEko00000,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.799311-CDS-P-wetherbeei_contig13767:49..1371683185996.799311-CDS-P-wetherbeei_contig13767:49..137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13767 50..137 +
1683185996.8084679-CDS-P-wetherbeei_contig13767:493..6121683185996.8084679-CDS-P-wetherbeei_contig13767:493..612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13767 494..612 +
1683185996.8166976-CDS-P-wetherbeei_contig13767:901..10661683185996.8166976-CDS-P-wetherbeei_contig13767:901..1066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13767 902..1066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13767.1.1prot_P-wetherbeei_contig13767.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13767 50..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13767.1.1

>prot_P-wetherbeei_contig13767.1.1 ID=prot_P-wetherbeei_contig13767.1.1|Name=mRNA_P-wetherbeei_contig13767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
TQQPNEVEEAIKDLKRNPGFSSYVIMNNDGIVIKYENMEYGTAVHHASLV
LDLTSKAKKYMRELFEPPDNDLESLRLRTPEYEMIVAQHENFTLVALQRD
QRAAKTEEGRPGEEGEDKGSKEA*
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mRNA from alignment at P-wetherbeei_contig13767:50..1066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13767.1.1 ID=mRNA_P-wetherbeei_contig13767.1.1|Name=mRNA_P-wetherbeei_contig13767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig13767:50..1066+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCAACAACCAAATGAGGTCGAGGAGGCCATCAAGGATTTGAAGCGGAA TCCCGGCTTCTCGTCATACGTTATCATGAACAACGACGGTAAGTAGTACA CGAATTTCCTGTGGTATTCCTTAGCACACATGATTTGGTCCCTTCCTCCT TCGTGTTAAACAGCCTTTGCAAGCAATTCACAGCAAAGAGTGTATCACTG CGAGCAACGCAGCGAAATACAACGTGCCCTGTGCAGTTCACCGCCGTACT CACTTCTGTAGCATTCCGGGTGTGAGCTAGCAGTTCGGAAATGCGGACAT GTGTTTCTCCCATGACGATCTCTCTCGAGGGCGGGACACCCCTCCAACCT AAATTGCTGATTAAAAGCGGTCTCTAAAACGATGTGCCATGACATATGCA TGGTCTGTGCCTCAACGCGCGTAACTGCTGAACCCCCAAACCAGGCATCG TAATCAAGTACGAGAATATGGAGTATGGCACGGCGGTGCACCACGCTTCC TTAGTGCTTGACCTCACGTCAAAAGCCAAAAAGTACATGCGGGAGCTGTT CGAGCCGCCGGATGTGAGTGAGGAACGCCTGGCGCGATTGCTGGCGTCCC CGTTGCCGTCTCTCGCTGCATCTCGCATCCCTGGTTCATATTTTATCTTC TTCCTCTCCCATTCAGCCCATCGAGGTAGATGCTTCCATGAAGGAACTCC CCTTTCCCAACCGTCTTATTCTATAGTCTTTCGGTCCTATATCGCCTCGC GTTCTGCTCTTGATTTACTGCCCCGCCACTGCTATTCCTGCCACTGCCCC ATCCCACTGCCGCCGCCGCCGCTTCCGTCGCATCCGCCGCCATTATCGAC AGAACGACTTGGAGTCGCTGCGTCTACGGACCCCCGAGTATGAGATGATC GTGGCGCAGCACGAAAACTTCACACTCGTAGCACTGCAGCGGGACCAGCG GGCGGCCAAGACGGAGGAGGGGAGGCCCGGGGAGGAGGGGGAGGACAAAG GCAGTAAGGAGGCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13767:50..1066+

>mRNA_P-wetherbeei_contig13767.1.1 ID=mRNA_P-wetherbeei_contig13767.1.1|Name=mRNA_P-wetherbeei_contig13767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13767:50..1066+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCAACAACCAAATGAGGTCGAGGAGGCCATCAAGGATTTGAAGCGGAA
TCCCGGCTTCTCGTCATACGTTATCATGAACAACGACGGCATCGTAATCA
AGTACGAGAATATGGAGTATGGCACGGCGGTGCACCACGCTTCCTTAGTG
CTTGACCTCACGTCAAAAGCCAAAAAGTACATGCGGGAGCTGTTCGAGCC
GCCGGATAACGACTTGGAGTCGCTGCGTCTACGGACCCCCGAGTATGAGA
TGATCGTGGCGCAGCACGAAAACTTCACACTCGTAGCACTGCAGCGGGAC
CAGCGGGCGGCCAAGACGGAGGAGGGGAGGCCCGGGGAGGAGGGGGAGGA
CAAAGGCAGTAAGGAGGCGTAG
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