mRNA_P-wetherbeei_contig13757.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13757.3.1
Unique NamemRNA_P-wetherbeei_contig13757.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A3C0TZ14_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TZ14_9PROT)

HSP 1 Score: 121 bits (304), Expect = 2.550e-34
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 MSEKKKTASLESVTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAPENGAG 261
            MSEKKK A    V+GLSFE AL ELESIVARLE GQVDLEESI IYERGS LKAHC+AKLK+A AKVEKIVVS DG++SA P++ AG
Sbjct:    1 MSEKKKNAPPSEVSGLSFEQALAELESIVARLEGGQVDLEESIGIYERGSLLKAHCEAKLKEAHAKVEKIVVSADGAVSAVPQDSAG 87          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A7Y8MU32_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MU32_9PROT)

HSP 1 Score: 103 bits (257), Expect = 3.500e-27
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   37 VTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            +  LSFEAALRELE IV RLE GQVDLEESI+IYERG+ LKAHC+ KLKDAQA+VEKIVV  DG+I+ AP
Sbjct:   12 IAALSFEAALRELEEIVTRLERGQVDLEESIAIYERGALLKAHCEKKLKDAQARVEKIVVGSDGAITTAP 81          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A351T0Y7_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T0Y7_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 MSEKKKTASLESVTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            M+ +KKTA  + +  LSFE AL ELE+IVARLE GQVDLEESI IYERG+ LKAHC+AKL+ AQAKV++IVV  DG +   P
Sbjct:    1 MAAEKKTAIPKDIAALSFEQALAELEAIVARLEGGQVDLEESIGIYERGAFLKAHCEAKLQAAQAKVDRIVVGADGGLKTEP 82          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A1F3A2J9_9PROT (Exodeoxyribonuclease 7 small subunit n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A2J9_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 4.810e-24
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1
Query:   43 GLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            G+SFE AL ELE+IV +LESG VDLEESI++YERG+ LKAHC+AKLK AQ ++EKIVVSGDG++   P
Sbjct:    9 GVSFEKALAELEAIVQKLESGSVDLEESIALYERGAALKAHCEAKLKAAQERIEKIVVSGDGAVKTEP 76          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: UPI00036C5A23 (exodeoxyribonuclease VII small subunit n=1 Tax=Woodsholea maritima TaxID=240237 RepID=UPI00036C5A23)

HSP 1 Score: 95.5 bits (236), Expect = 5.370e-24
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   31 ESVTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            + +T + FEAAL ELE IV +LESG V LEESISIYERG+ L+AHC+ KLKDAQAKVEKI++  DG IS AP
Sbjct:    7 QEITNMPFEAALAELERIVQKLESGDVALEESISIYERGAALRAHCETKLKDAQAKVEKIMLGEDGKISTAP 78          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A7C2T2Z8_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C2T2Z8_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 8.170e-23
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   46 LSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            LSFE AL ELE IV +LESGQVDLEESI++YERG+ LKAHC+AKLK AQ ++EKIV  GDG++ A P
Sbjct:   11 LSFEKALAELEQIVQKLESGQVDLEESIALYERGAALKAHCEAKLKAAQERIEKIVDLGDGTVKAEP 77          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A420WIM0_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WIM0_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.520e-22
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   46 LSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            LSFE AL+ELE IVARLE G   LEESI+IY+RG+ LKAHCDAKLKDAQ KVEKIV+ G GS    P
Sbjct:    9 LSFEDALKELEDIVARLERGDAPLEESITIYQRGAALKAHCDAKLKDAQMKVEKIVLDGKGSAGTEP 75          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A5M6ZNE2_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZNE2_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.600e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   37 VTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            +  LSFEAAL ELE IV +LESG+V+LE+SI++Y+RG+ LKAHC+A+LKDAQ KV+KIV+  DG  SA P
Sbjct:    7 IAKLSFEAALAELEDIVHKLESGEVELEKSIALYQRGAALKAHCEARLKDAQLKVDKIVIGADGKASAEP 76          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A7Y1SL77_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A7Y1SL77_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 2.280e-22
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   34 SVTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAP 246
            ++  +SFE AL ELESIVARLE G   LEESI IYERG++LK HC++KLKDAQ KV+KIV+  DGS+S  P
Sbjct:    5 AIKDMSFEDALSELESIVARLERGDAPLEESIDIYERGAKLKKHCESKLKDAQLKVDKIVLGADGSVSTEP 75          
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Match: A0A523FNI5_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FNI5_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 2.540e-22
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   31 ESVTGLSFEAALRELESIVARLESGQVDLEESISIYERGSQLKAHCDAKLKDAQAKVEKIVVSGDGSISAAPEN 252
            E +  +SFEA+L ELES+V +LESGQV LE+SI +Y RG+QLK HC+A+L DAQA++EK+V+SGD SI   P N
Sbjct:   10 EDILAMSFEASLSELESVVQKLESGQVSLEDSIDMYTRGTQLKQHCEARLSDAQARIEKVVISGD-SIKTEPAN 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13757.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TZ14_9PROT2.550e-3475.86Exodeoxyribonuclease 7 small subunit n=1 Tax=Alpha... [more]
A0A7Y8MU32_9PROT3.500e-2775.71Exodeoxyribonuclease 7 small subunit n=1 Tax=Alpha... [more]
A0A351T0Y7_9PROT1.700e-2564.63Exodeoxyribonuclease 7 small subunit n=1 Tax=Alpha... [more]
A0A1F3A2J9_9PROT4.810e-2469.12Exodeoxyribonuclease 7 small subunit n=2 Tax=Alpha... [more]
UPI00036C5A235.370e-2468.06exodeoxyribonuclease VII small subunit n=1 Tax=Woo... [more]
A0A7C2T2Z8_9PROT8.170e-2370.15Exodeoxyribonuclease 7 small subunit n=1 Tax=Alpha... [more]
A0A420WIM0_9PROT1.520e-2271.64Exodeoxyribonuclease 7 small subunit n=1 Tax=Litor... [more]
A0A5M6ZNE2_9PROT1.600e-2264.29Exodeoxyribonuclease 7 small subunit n=1 Tax=Alkal... [more]
A0A7Y1SL77_9PROT2.280e-2264.79Exodeoxyribonuclease 7 small subunit n=1 Tax=Hypho... [more]
A0A523FNI5_9PROT2.540e-2260.81Exodeoxyribonuclease 7 small subunit n=1 Tax=Alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13757contigP-wetherbeei_contig13757:1361..1624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123503.KB908058_gene867
Preferred namexseB
PFAMsExonuc_VII_S
Model size264
Max annot lvl204458|Caulobacterales
KEGG koko:K03602
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-23
EggNOG OGsCOG1722@1|root,COG1722@2|Bacteria,1PTYQ@1224|Proteobacteria,2UFD6@28211|Alphaproteobacteria,2KH8R@204458|Caulobacterales
EC3.1.11.6
DescriptionBidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
Cds size264
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.4740753-CDS-P-wetherbeei_contig13757:1360..16241683185996.4740753-CDS-P-wetherbeei_contig13757:1360..1624Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13757 1361..1624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13757.3.1prot_P-wetherbeei_contig13757.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13757 1361..1624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13757.3.1

>prot_P-wetherbeei_contig13757.3.1 ID=prot_P-wetherbeei_contig13757.3.1|Name=mRNA_P-wetherbeei_contig13757.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MSEKKKTASLESVTGLSFEAALRELESIVARLESGQVDLEESISIYERGS
QLKAHCDAKLKDAQAKVEKIVVSGDGSISAAPENGAG*
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mRNA from alignment at P-wetherbeei_contig13757:1361..1624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13757.3.1 ID=mRNA_P-wetherbeei_contig13757.3.1|Name=mRNA_P-wetherbeei_contig13757.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13757:1361..1624+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAAAAGAAAAAAACAGCATCTCTGGAATCCGTAACTGGTTTGAG TTTTGAGGCGGCCCTGCGCGAGCTTGAATCCATTGTGGCGCGGCTCGAAA GCGGGCAGGTTGATCTGGAAGAATCCATCAGTATTTATGAACGCGGCAGC CAGTTGAAAGCCCATTGCGACGCCAAGCTGAAAGATGCGCAGGCCAAGGT AGAAAAAATTGTTGTGTCAGGTGATGGTTCAATTTCCGCAGCTCCCGAAA ATGGCGCCGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13757:1361..1624+

>mRNA_P-wetherbeei_contig13757.3.1 ID=mRNA_P-wetherbeei_contig13757.3.1|Name=mRNA_P-wetherbeei_contig13757.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13757:1361..1624+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAAAAGAAAAAAACAGCATCTCTGGAATCCGTAACTGGTTTGAG
TTTTGAGGCGGCCCTGCGCGAGCTTGAATCCATTGTGGCGCGGCTCGAAA
GCGGGCAGGTTGATCTGGAAGAATCCATCAGTATTTATGAACGCGGCAGC
CAGTTGAAAGCCCATTGCGACGCCAAGCTGAAAGATGCGCAGGCCAAGGT
AGAAAAAATTGTTGTGTCAGGTGATGGTTCAATTTCCGCAGCTCCCGAAA
ATGGCGCCGGATAA
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