mRNA_P-wetherbeei_contig1375.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1375.2.2
Unique NamemRNA_P-wetherbeei_contig1375.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1375.2.2 vs. uniprot
Match: A0A836CC55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC55_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.060e-15
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 3 
Query: 1296 LEALISAHNKQVLRGKQVFEPTRHSVRDYKRWEAMTGQVYRDLSADRRADANREIDDMLQRAV 1484
            LEALIS HNK V++GK  +EP+RH+++DYK WE  TG+ Y +LS D+RA+AN  IDDM ++A 
Sbjct:    4 LEALISKHNKSVMKGKATYEPSRHTLKDYKAWETKTGKRYHELSVDQRAEANTAIDDMKRQAA 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1375.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CC55_9STRA6.060e-1557.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1375contigP-wetherbeei_contig1375:549..2622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000014369
Model size1894
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-05
EggNOG OGs2E05D@1|root,2S7KX@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000060.1
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.0101223-UTR-P-wetherbeei_contig1375:548..9341683185996.0101223-UTR-P-wetherbeei_contig1375:548..934Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1375 549..934 -
1683185996.0358522-UTR-P-wetherbeei_contig1375:2095..26221683185996.0358522-UTR-P-wetherbeei_contig1375:2095..2622Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1375 2096..2622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.0207257-CDS-P-wetherbeei_contig1375:934..18701683185996.0207257-CDS-P-wetherbeei_contig1375:934..1870Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1375 935..1870 -
1683185996.027877-CDS-P-wetherbeei_contig1375:2050..20951683185996.027877-CDS-P-wetherbeei_contig1375:2050..2095Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1375 2051..2095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1375.2.2prot_P-wetherbeei_contig1375.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1375 935..2095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1375.2.2

>prot_P-wetherbeei_contig1375.2.2 ID=prot_P-wetherbeei_contig1375.2.2|Name=mRNA_P-wetherbeei_contig1375.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MQRRLEEYRRQKASASGAGSATSRTTARVSSAAGNGKRRAGSAAAAAATA
AADLACVAPIGVMRAATATVKTVPCRRCPAVPAANGGGARLSSAAAAAAG
APGAAATAATAGAVASRPSRPPAADGRSSGAPPRGNHAGVSAAGAAESAS
AGSRGGFFPRAGGTSSSGGGDANSRNVSAHGALGASRRSRDNAIFGASNH
PTSGSARNRLATSDGGGGASASAGCSHRAGGGASRPAGRRAAAAAAAERG
QEGDIALEALISAHNKQVLRGKQVFEPTRHSVRDYKRWEAMTGQVYRDLS
ADRRADANREIDDMLQRAVEQQRHGD*
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mRNA from alignment at P-wetherbeei_contig1375:549..2622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1375.2.2 ID=mRNA_P-wetherbeei_contig1375.2.2|Name=mRNA_P-wetherbeei_contig1375.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2074bp|location=Sequence derived from alignment at P-wetherbeei_contig1375:549..2622- (Phaeothamnion wetherbeei SAG_119_79)
AAACTCGGAGGACAACGAAGCTGTCGAGCCGTGGTTCGTGGAATATCATC
CACGGCATTTCTCAAACGCCAAGGGCGACCGCAAGAGGTACATCTAGCAA
TGCTGCTCTATCTTGTGTTCCTTTCCCTCCCTTTCTATCCCAATCGTCCC
TCTAGCTTTCGACTTGTGCGTTATTGCACAGGAAGAGCGGCGGAGCGCTG
CGCCGCGCCTCCGGTGCTGCCTCATCTTCTGCTGGCGCCGCCGCCGCCGG
GAAACTGCCCACGGAACACGCTTCCGGCAAAGAGAATGGCTCGGAACGCG
GCCCCTCCTCTTACCCCGCAACAGCTCCGAAAGAGGAGGAGAGGCACGAC
GAGGGACGAAACGGCCAACGAAAGCGCCAGCGTGATGCCGACGCCGGACC
GGAAGCCGCTGCGGGGGCGGCAGCGGCGGTGGCGACGGGTGCGTCGGCAG
GCGGCGTCTGTAGAAAGACCAGGCTGCAACTGCCGACTCAATCGAGCGTG
GCGAGATTCCAGCAGCACGACGTCAACATGCAGCGCAGGCTCGAGGAATA
CCGCCGTCAGAAGGCGTCAGCGGTGAGCCGGACGATCCTTTCATGCTCAG
GTGCACATGGATTCTTCGGTGTGCAGTTGCAAACTTTCGACAGCTGTTAC
AAGCGGGAGTTTCTGCATCTGGAAACACTGACACCTCTTAACAACACGTT
TCACGTTCGGGACTTCTCCTATTTTTGCTGCTTTTCCGTCCGTTTCCCGT
AGTCCGGCGCAGGTTCTGCAACGTCGAGGACGACGGCACGAGTGTCTTCT
GCGGCTGGCAACGGCAAGCGCCGCGCCGGCTCTGCTGCCGCCGCCGCCGC
CACGGCCGCTGCAGATCTGGCCTGCGTGGCACCAATTGGGGTGATGCGGG
CTGCCACCGCAACAGTAAAGACCGTGCCGTGCCGGCGATGCCCGGCTGTG
CCCGCAGCGAACGGAGGAGGAGCACGGCTGTCTTCGGCGGCGGCTGCGGC
CGCTGGCGCACCTGGCGCCGCCGCCACCGCTGCCACAGCAGGGGCGGTGG
CAAGCAGGCCCTCCCGTCCACCGGCCGCCGACGGGCGTTCAAGCGGCGCG
CCGCCCCGTGGCAACCATGCAGGGGTGTCCGCCGCAGGCGCCGCTGAAAG
TGCCAGCGCCGGATCACGGGGCGGTTTCTTTCCTAGAGCCGGGGGCACGA
GCAGCAGCGGCGGCGGTGATGCGAACAGCCGCAACGTGAGTGCCCACGGT
GCTTTGGGCGCTAGCCGCCGAAGCCGAGACAATGCCATCTTTGGCGCCAG
CAACCATCCAACCAGCGGCAGCGCCCGCAACCGCCTTGCCACCAGCGACG
GCGGCGGAGGTGCCAGCGCCAGCGCTGGCTGTAGTCATCGCGCCGGGGGC
GGCGCCAGTCGCCCTGCTGGGCGTCGCGCAGCAGCGGCGGCGGCGGCAGA
AAGAGGGCAGGAAGGCGACATAGCGCTGGAGGCGCTCATCTCGGCACACA
ACAAGCAGGTGCTGCGCGGCAAGCAGGTCTTCGAGCCGACGCGCCACTCG
GTGCGTGACTACAAGCGGTGGGAGGCCATGACGGGGCAGGTGTACCGGGA
TCTGTCCGCGGACCGCCGCGCCGACGCCAACCGCGAGATCGATGATATGC
TGCAGCGAGCAGTGGAGCAGCAGCGACATGGCGACTAAGCTGCGGGGGCT
GCGCGGCGGCAGCGGGCGGAGCGGCGGCAGCATGGCGGATGAGCGGCGGC
GGCACATGGCTGAGCGGCGGCGGCACGTGGCTGAGCGGCGTCGGCACGGC
GGTTGAGCGGCGGCGAGGCGGCTAAGCAACGGCAGCAGCGGCGGCGGCAG
CAGCGGTGGCAGCGTCAAAGGGGCATTCTGAGCGGAGGGTGCGCAGCTTT
CAGTCGCGTACCTCGTATTCTATCCTACACCCTGCAGAGCATCAATCCAG
ATTTTGAACGTGTCCGCTGGAATCCTCTATCCAGGAGGGGAGATGGCAAT
GTAACCATTGTTATAGCTGCTCGGGAAATTCTAAGCGTATTCTAGACTAT
TCGCCACAGCGCGGCAAAAGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1375:549..2622-

>mRNA_P-wetherbeei_contig1375.2.2 ID=mRNA_P-wetherbeei_contig1375.2.2|Name=mRNA_P-wetherbeei_contig1375.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig1375:549..2622- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGCAGGCTCGAGGAATACCGCCGTCAGAAGGCGTCAGCGTCCGG
CGCAGGTTCTGCAACGTCGAGGACGACGGCACGAGTGTCTTCTGCGGCTG
GCAACGGCAAGCGCCGCGCCGGCTCTGCTGCCGCCGCCGCCGCCACGGCC
GCTGCAGATCTGGCCTGCGTGGCACCAATTGGGGTGATGCGGGCTGCCAC
CGCAACAGTAAAGACCGTGCCGTGCCGGCGATGCCCGGCTGTGCCCGCAG
CGAACGGAGGAGGAGCACGGCTGTCTTCGGCGGCGGCTGCGGCCGCTGGC
GCACCTGGCGCCGCCGCCACCGCTGCCACAGCAGGGGCGGTGGCAAGCAG
GCCCTCCCGTCCACCGGCCGCCGACGGGCGTTCAAGCGGCGCGCCGCCCC
GTGGCAACCATGCAGGGGTGTCCGCCGCAGGCGCCGCTGAAAGTGCCAGC
GCCGGATCACGGGGCGGTTTCTTTCCTAGAGCCGGGGGCACGAGCAGCAG
CGGCGGCGGTGATGCGAACAGCCGCAACGTGAGTGCCCACGGTGCTTTGG
GCGCTAGCCGCCGAAGCCGAGACAATGCCATCTTTGGCGCCAGCAACCAT
CCAACCAGCGGCAGCGCCCGCAACCGCCTTGCCACCAGCGACGGCGGCGG
AGGTGCCAGCGCCAGCGCTGGCTGTAGTCATCGCGCCGGGGGCGGCGCCA
GTCGCCCTGCTGGGCGTCGCGCAGCAGCGGCGGCGGCGGCAGAAAGAGGG
CAGGAAGGCGACATAGCGCTGGAGGCGCTCATCTCGGCACACAACAAGCA
GGTGCTGCGCGGCAAGCAGGTCTTCGAGCCGACGCGCCACTCGGTGCGTG
ACTACAAGCGGTGGGAGGCCATGACGGGGCAGGTGTACCGGGATCTGTCC
GCGGACCGCCGCGCCGACGCCAACCGCGAGATCGATGATATGCTGCAGCG
AGCAGTGGAGCAGCAGCGACATGGCGACTAA
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