mRNA_P-wetherbeei_contig13742.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13742.2.1
Unique NamemRNA_P-wetherbeei_contig13742.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13742.2.1 vs. uniprot
Match: UPI000FCAD4F7 (hypothetical protein n=1 Tax=Mesorhizobium sp. M7A.F.Ca.ET.027.03.2.1 TaxID=2496656 RepID=UPI000FCAD4F7)

HSP 1 Score: 52.0 bits (123), Expect = 7.470e-5
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 AAIESNRLSRELFVSSERPWILVDHVQVKSALVFDETGVHLDFDLALRNTGKSPARNVTVEARLYPM 201
            AA+++NR++RE F + +RPW+         +    +TG  L  ++A++NTGKSPA +VT    + PM
Sbjct:  131 AAVDANRIAREHFAAEQRPWLRFKGEIELGSFNSKDTGEVLTLNVAVQNTGKSPAESVTAHLLVRPM 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13742.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000FCAD4F77.470e-537.31hypothetical protein n=1 Tax=Mesorhizobium sp. M7A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13742contigP-wetherbeei_contig13742:1319..1801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.954197-CDS-P-wetherbeei_contig13742:1318..18011683185995.954197-CDS-P-wetherbeei_contig13742:1318..1801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13742 1319..1801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13742.2.1prot_P-wetherbeei_contig13742.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13742 1319..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13742.2.1

>prot_P-wetherbeei_contig13742.2.1 ID=prot_P-wetherbeei_contig13742.2.1|Name=mRNA_P-wetherbeei_contig13742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
AAIESNRLSRELFVSSERPWILVDHVQVKSALVFDETGVHLDFDLALRNT
GKSPARNVTVEARLYPMSPSLSDPSDEKMAFVLSAEDSKTYAPKSRMVLH
LGQNEILQRHVFISRKEMEKAISLEDTEFIIPVIIGSVRYEFIADNEFHY
THFMYSVSREP
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mRNA from alignment at P-wetherbeei_contig13742:1319..1801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13742.2.1 ID=mRNA_P-wetherbeei_contig13742.2.1|Name=mRNA_P-wetherbeei_contig13742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig13742:1319..1801- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTATCGAATCCAACAGGTTGAGCCGGGAATTGTTTGTTTCCAGCGA
AAGGCCGTGGATTTTGGTGGATCATGTCCAGGTAAAAAGCGCGCTTGTCT
TCGATGAAACGGGCGTGCATCTGGATTTCGATTTGGCCCTCAGGAATACC
GGCAAATCTCCGGCGAGGAATGTGACTGTCGAAGCCAGGCTTTATCCCAT
GAGTCCCTCCCTCTCCGATCCCAGCGACGAAAAAATGGCATTCGTGCTGA
GCGCCGAGGATAGTAAGACCTATGCTCCCAAAAGCCGCATGGTCTTGCAT
CTTGGACAGAATGAAATTCTGCAAAGGCATGTTTTCATCTCCAGAAAGGA
GATGGAGAAAGCAATCAGCCTTGAAGACACGGAGTTCATTATTCCCGTGA
TAATTGGCTCGGTGCGCTACGAATTCATCGCTGACAACGAATTCCACTAC
ACCCATTTCATGTACAGCGTTTCCCGTGAACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13742:1319..1801-

>mRNA_P-wetherbeei_contig13742.2.1 ID=mRNA_P-wetherbeei_contig13742.2.1|Name=mRNA_P-wetherbeei_contig13742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig13742:1319..1801- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTATCGAATCCAACAGGTTGAGCCGGGAATTGTTTGTTTCCAGCGA
AAGGCCGTGGATTTTGGTGGATCATGTCCAGGTAAAAAGCGCGCTTGTCT
TCGATGAAACGGGCGTGCATCTGGATTTCGATTTGGCCCTCAGGAATACC
GGCAAATCTCCGGCGAGGAATGTGACTGTCGAAGCCAGGCTTTATCCCAT
GAGTCCCTCCCTCTCCGATCCCAGCGACGAAAAAATGGCATTCGTGCTGA
GCGCCGAGGATAGTAAGACCTATGCTCCCAAAAGCCGCATGGTCTTGCAT
CTTGGACAGAATGAAATTCTGCAAAGGCATGTTTTCATCTCCAGAAAGGA
GATGGAGAAAGCAATCAGCCTTGAAGACACGGAGTTCATTATTCCCGTGA
TAATTGGCTCGGTGCGCTACGAATTCATCGCTGACAACGAATTCCACTAC
ACCCATTTCATGTACAGCGTTTCCCGTGAACCG
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