mRNA_P-wetherbeei_contig1373.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1373.1.1
Unique NamemRNA_P-wetherbeei_contig1373.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1373.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1373contigP-wetherbeei_contig1373:1514..1845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size332
Hectar predicted targeting categorymitochondrion
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.6288836-UTR-P-wetherbeei_contig1373:1513..15181683185995.6288836-UTR-P-wetherbeei_contig1373:1513..1518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1373 1514..1518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.6366148-CDS-P-wetherbeei_contig1373:1518..18451683185995.6366148-CDS-P-wetherbeei_contig1373:1518..1845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1373 1519..1845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1373.1.1prot_P-wetherbeei_contig1373.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1373 1519..1845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1373.1.1

>prot_P-wetherbeei_contig1373.1.1 ID=prot_P-wetherbeei_contig1373.1.1|Name=mRNA_P-wetherbeei_contig1373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MMAAERASAANARRATRTLMPRRPPAPDLVAMSGISKRSRSEGAQRQRAS
VGANSTQAGRTVHMSHVQRTAEGMDTDYRFCAHLDWNFFLLSAVAFTTGR
AAFAAVPPG
back to top

mRNA from alignment at P-wetherbeei_contig1373:1514..1845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1373.1.1 ID=mRNA_P-wetherbeei_contig1373.1.1|Name=mRNA_P-wetherbeei_contig1373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=332bp|location=Sequence derived from alignment at P-wetherbeei_contig1373:1514..1845+ (Phaeothamnion wetherbeei SAG_119_79)
CAATAATGATGGCGGCAGAGAGAGCGTCGGCGGCGAATGCCCGACGGGCG
ACGAGGACGCTGATGCCTCGCCGTCCGCCGGCTCCGGATCTGGTGGCCAT
GAGCGGCATTTCGAAGCGTAGCCGCTCAGAAGGCGCGCAGCGGCAGCGGG
CAAGTGTGGGAGCGAACAGCACTCAGGCTGGGCGGACGGTGCATATGTCG
CACGTGCAGCGCACCGCTGAAGGCATGGACACCGATTATCGCTTCTGCGC
ACATCTAGACTGGAACTTCTTTTTGTTGAGCGCGGTGGCGTTTACGACCG
GGCGTGCGGCGTTTGCGGCTGTGCCGCCGGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1373:1514..1845+

>mRNA_P-wetherbeei_contig1373.1.1 ID=mRNA_P-wetherbeei_contig1373.1.1|Name=mRNA_P-wetherbeei_contig1373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig1373:1514..1845+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCGGCAGAGAGAGCGTCGGCGGCGAATGCCCGACGGGCGACGAG
GACGCTGATGCCTCGCCGTCCGCCGGCTCCGGATCTGGTGGCCATGAGCG
GCATTTCGAAGCGTAGCCGCTCAGAAGGCGCGCAGCGGCAGCGGGCAAGT
GTGGGAGCGAACAGCACTCAGGCTGGGCGGACGGTGCATATGTCGCACGT
GCAGCGCACCGCTGAAGGCATGGACACCGATTATCGCTTCTGCGCACATC
TAGACTGGAACTTCTTTTTGTTGAGCGCGGTGGCGTTTACGACCGGGCGT
GCGGCGTTTGCGGCTGTGCCGCCGGGT
back to top