mRNA_P-wetherbeei_contig13704.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13704.1.2
Unique NamemRNA_P-wetherbeei_contig13704.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13704.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13704contigP-wetherbeei_contig13704:50..1618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1188
Hectar predicted targeting categoryother localisation
Exons3
Cds size1185
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.1425922-CDS-P-wetherbeei_contig13704:49..6221683185995.1425922-CDS-P-wetherbeei_contig13704:49..622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13704 50..622 -
1683185995.1503592-CDS-P-wetherbeei_contig13704:844..11821683185995.1503592-CDS-P-wetherbeei_contig13704:844..1182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13704 845..1182 -
1683185995.1578887-CDS-P-wetherbeei_contig13704:1341..16151683185995.1578887-CDS-P-wetherbeei_contig13704:1341..1615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13704 1342..1615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.165226-UTR-P-wetherbeei_contig13704:1615..16181683185995.165226-UTR-P-wetherbeei_contig13704:1615..1618Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13704 1616..1618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13704.1.2prot_P-wetherbeei_contig13704.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13704 50..1615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13704.1.2

>prot_P-wetherbeei_contig13704.1.2 ID=prot_P-wetherbeei_contig13704.1.2|Name=mRNA_P-wetherbeei_contig13704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=395bp
MMLHLSFAVVRTENAVARKGGSGSGGFKGSHARRKAAAAGDGADRDDDTD
GARRAMKAYAANSVLALVNGQLAQRHRGKGEIVTVSSKVGDEKLSTNLHT
NRSIFLKGLAAHAGDMVLKTITDPAVAAAATAGVGGGSSVSGTSNGRESG
SGGDGDKDDSQEDDLSQGSFTIASVATDAAMKLLGSASSPKKKRLELYTS
AVEQMFAETALMRAHQKLLKGQTGGGGNGGEGGDENSSTDDVGESSSSNG
DSGDSGGGAGHDRSGDGSRRSDNSRADDGGDCSTGGAGGGESSGGGGGRG
GGSSSGNGGRSSGGSSGGGNGAPAVDAAMLRMEHLYLPGDPTKATLLLGD
ELVRKLILQTGVWLEEAERAAGKPLTAEEARATLRTPPDLNGFAN
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mRNA from alignment at P-wetherbeei_contig13704:50..1618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13704.1.2 ID=mRNA_P-wetherbeei_contig13704.1.2|Name=mRNA_P-wetherbeei_contig13704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1569bp|location=Sequence derived from alignment at P-wetherbeei_contig13704:50..1618- (Phaeothamnion wetherbeei SAG_119_79)
CGCATGATGCTGCACCTCTCCTTTGCGGTCGTCCGCACCGAAAACGCCGT
TGCGCGCAAGGGCGGCAGCGGATCTGGCGGCTTTAAAGGCAGTCACGCCC
GCAGAAAGGCGGCTGCCGCTGGAGACGGCGCCGACCGCGATGACGACACC
GACGGCGCAAGGCGGGCAATGAAGGCCTATGCAGCAAATTCCGTGCTGGC
GCTGGTGAACGGGCAGCTGGCGCAGCGACACCGCGGGAAGGGTGAGATCG
TCACCGTCTCGAGCAAAGTCGGCGACGGTAAGTTCTTGTTTTGCTTTGTC
TAATCGTCTGTTTCATGAAATATGTATTCATGCCCATTATGGTCAGCCAG
TACGTGCGAATTCAATTCTCCATTTGTTCTTCTTTTTCTTTTCCTCTTCC
ACACGGATATTTTCCAATTTTCGCTTTTTCTGGCAGAGAAGCTGTCCACG
AACCTCCACACCAACCGCTCAATATTTCTCAAGGGACTCGCTGCGCACGC
TGGCGATATGGTCCTCAAAACCATTACGGACCCGGCGGTTGCTGCCGCTG
CCACTGCTGGCGTTGGCGGCGGCAGCAGCGTTTCGGGCACTTCCAACGGC
AGGGAGAGCGGCAGCGGCGGCGACGGCGACAAAGACGATAGCCAGGAGGA
CGACTTGAGCCAAGGTTCCTTCACAATTGCCTCGGTGGCGACTGATGCGG
CCATGAAGCTGCTTGGGAGCGCCAGCTCGCCAAAGAAGAAGCGTCTAGAA
CTGTACACTTCTGCAGTCGAACAGGTGAATCAAGAATGCTACTGTGTTTC
GGGTATCTCTTGTGCTTGCTGCTTCTTTTTTCCTGCTTTCAAGTCTTCTT
CGAATTCTGTGTTTTCCGAAGCCGTCTTTTCAATAATTCACGGTTAGCTT
GAAAATGTTGTTATGAAGAAGTTTAGGCTAGTACGGATAAAACACAGATT
CACCCATTCTGATGTTCTCTTCATGCGGCCTGCCGATTGCGTGCAGATGT
TTGCCGAGACAGCGCTGATGCGAGCCCACCAGAAGCTGCTCAAGGGGCAG
ACCGGCGGCGGTGGCAACGGCGGCGAGGGCGGCGACGAGAACAGCAGCAC
AGACGATGTCGGGGAGAGCAGCAGCAGTAACGGCGACAGCGGCGACAGCG
GCGGTGGAGCTGGCCACGACCGCAGCGGCGACGGCAGCCGCCGCAGCGAT
AACAGCAGAGCGGATGATGGCGGTGATTGCAGCACCGGCGGCGCAGGCGG
CGGTGAGAGCAGCGGCGGCGGAGGGGGCCGTGGTGGCGGCAGCAGCAGCG
GCAACGGTGGTAGGAGCAGCGGCGGCAGTTCCGGAGGCGGCAACGGCGCC
CCCGCAGTGGATGCGGCGATGCTGCGCATGGAACATCTCTACCTGCCAGG
TGACCCGACGAAGGCAACGCTCCTTCTCGGGGATGAGCTTGTGCGGAAGC
TCATCCTCCAGACCGGGGTCTGGCTGGAAGAGGCGGAAAGGGCTGCGGGC
AAGCCCCTGACGGCGGAAGAAGCCCGGGCGACTCTGCGCACACCGCCGGA
TTTGAACGGATTTGCCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13704:50..1618-

>mRNA_P-wetherbeei_contig13704.1.2 ID=mRNA_P-wetherbeei_contig13704.1.2|Name=mRNA_P-wetherbeei_contig13704.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig13704:50..1618- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTGCACCTCTCCTTTGCGGTCGTCCGCACCGAAAACGCCGTTGC
GCGCAAGGGCGGCAGCGGATCTGGCGGCTTTAAAGGCAGTCACGCCCGCA
GAAAGGCGGCTGCCGCTGGAGACGGCGCCGACCGCGATGACGACACCGAC
GGCGCAAGGCGGGCAATGAAGGCCTATGCAGCAAATTCCGTGCTGGCGCT
GGTGAACGGGCAGCTGGCGCAGCGACACCGCGGGAAGGGTGAGATCGTCA
CCGTCTCGAGCAAAGTCGGCGACGAGAAGCTGTCCACGAACCTCCACACC
AACCGCTCAATATTTCTCAAGGGACTCGCTGCGCACGCTGGCGATATGGT
CCTCAAAACCATTACGGACCCGGCGGTTGCTGCCGCTGCCACTGCTGGCG
TTGGCGGCGGCAGCAGCGTTTCGGGCACTTCCAACGGCAGGGAGAGCGGC
AGCGGCGGCGACGGCGACAAAGACGATAGCCAGGAGGACGACTTGAGCCA
AGGTTCCTTCACAATTGCCTCGGTGGCGACTGATGCGGCCATGAAGCTGC
TTGGGAGCGCCAGCTCGCCAAAGAAGAAGCGTCTAGAACTGTACACTTCT
GCAGTCGAACAGATGTTTGCCGAGACAGCGCTGATGCGAGCCCACCAGAA
GCTGCTCAAGGGGCAGACCGGCGGCGGTGGCAACGGCGGCGAGGGCGGCG
ACGAGAACAGCAGCACAGACGATGTCGGGGAGAGCAGCAGCAGTAACGGC
GACAGCGGCGACAGCGGCGGTGGAGCTGGCCACGACCGCAGCGGCGACGG
CAGCCGCCGCAGCGATAACAGCAGAGCGGATGATGGCGGTGATTGCAGCA
CCGGCGGCGCAGGCGGCGGTGAGAGCAGCGGCGGCGGAGGGGGCCGTGGT
GGCGGCAGCAGCAGCGGCAACGGTGGTAGGAGCAGCGGCGGCAGTTCCGG
AGGCGGCAACGGCGCCCCCGCAGTGGATGCGGCGATGCTGCGCATGGAAC
ATCTCTACCTGCCAGGTGACCCGACGAAGGCAACGCTCCTTCTCGGGGAT
GAGCTTGTGCGGAAGCTCATCCTCCAGACCGGGGTCTGGCTGGAAGAGGC
GGAAAGGGCTGCGGGCAAGCCCCTGACGGCGGAAGAAGCCCGGGCGACTC
TGCGCACACCGCCGGATTTGAACGGATTTGCCAAC
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