mRNA_P-wetherbeei_contig1369.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1369.3.1
Unique NamemRNA_P-wetherbeei_contig1369.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1369.3.1 vs. uniprot
Match: A0A7S2XV99_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV99_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.490e-28
Identity = 74/187 (39.57%), Postives = 102/187 (54.55%), Query Frame = 1 
Query:  139 IDKAIARDESALYAAADAKLPA--DPKVLLRWQPLMAHPLPMSYARFREEALLRRLCALAPERRAHAAVAHGSAWCIEELYRLGCSMDARDTTGRTALHVAAGLNDAAAVSALLNAGADPFAVTDAGTTVFRSAVAGGGNDCAAAWLLRARGIEMDPPHLRPEPLCFLDAEVRRP-RRAMDDRADYL 690
            + +AIARDES ++   DA++    D  +L++W+PL+ HPLP+S  +F  + L+RRL  L P +RA  A A G AWCIEE Y  GC ++  +  G   LH+AA L    AV  LLN G DP   T  G      AVA     CA   +  A G+   P   + + L  LD ++R+P  R +D R D L
Sbjct:   14 LHRAIARDESIIFQKEDAEIEKNRDHMLLVKWRPLLRHPLPVSEEKFANDRLMRRLNGLHPSKRALLAAAEGRAWCIEECYIKGCPIEVTNGEGYKPLHLAASLGHVEAVRVLLNIGVDPNDSTMTGFLPLALAVASNHTQCATL-IREAGGVMQAPDPDQVQLLRILDVDIRQPPSRVIDLRCDVL 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1369.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2XV99_9STRA7.490e-2839.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1369contigP-wetherbeei_contig1369:4135..4857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size724
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Cds size723
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.850181-CDS-P-wetherbeei_contig1369:4134..48571683185994.850181-CDS-P-wetherbeei_contig1369:4134..4857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1369 4135..4857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1369.3.1prot_P-wetherbeei_contig1369.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1369 4135..4857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1369.3.1

>prot_P-wetherbeei_contig1369.3.1 ID=prot_P-wetherbeei_contig1369.3.1|Name=mRNA_P-wetherbeei_contig1369.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
SQLLTFTGHSIVGNTMTLHHQHARGGTSRRRSRELRETSLELREGKIDKA
IARDESALYAAADAKLPADPKVLLRWQPLMAHPLPMSYARFREEALLRRL
CALAPERRAHAAVAHGSAWCIEELYRLGCSMDARDTTGRTALHVAAGLND
AAAVSALLNAGADPFAVTDAGTTVFRSAVAGGGNDCAAAWLLRARGIEMD
PPHLRPEPLCFLDAEVRRPRRAMDDRADYLGRGYAYAGQY*
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mRNA from alignment at P-wetherbeei_contig1369:4135..4857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1369.3.1 ID=mRNA_P-wetherbeei_contig1369.3.1|Name=mRNA_P-wetherbeei_contig1369.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:4135..4857- (Phaeothamnion wetherbeei SAG_119_79)
TCTCAACTACTTACCTTTACCGGGCACTCCATCGTGGGCAACACTATGAC
GCTGCACCACCAGCACGCGCGCGGGGGAACGTCGCGGCGACGCTCGAGAG
AGCTCCGAGAGACCTCGCTCGAGCTGCGCGAAGGCAAGATTGACAAAGCC
ATTGCGCGCGACGAGAGCGCTCTTTACGCCGCAGCCGACGCCAAGCTTCC
CGCCGACCCGAAAGTCCTCTTGCGATGGCAGCCTTTGATGGCGCACCCGC
TGCCAATGTCGTACGCTCGGTTTCGAGAAGAAGCGCTTCTTCGGCGTCTG
TGCGCTCTGGCGCCGGAACGCCGCGCCCACGCCGCGGTGGCTCACGGAAG
CGCATGGTGCATCGAGGAGCTTTACCGGCTCGGCTGCTCGATGGACGCAC
GCGACACAACTGGACGCACGGCACTGCACGTCGCCGCGGGGCTCAACGAC
GCCGCCGCGGTCTCCGCACTCCTCAACGCCGGCGCCGATCCTTTCGCCGT
GACCGATGCGGGCACGACCGTCTTCCGCAGCGCTGTGGCTGGCGGCGGGA
ACGACTGTGCTGCCGCATGGCTCCTCCGTGCCCGTGGGATCGAAATGGAC
CCGCCGCACCTCCGGCCGGAGCCGCTTTGCTTCTTGGACGCGGAGGTCAG
GCGGCCGCGGCGCGCAATGGACGACCGGGCGGACTACCTCGGGAGAGGTT
ACGCGTATGCTGGGCAATACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1369:4135..4857-

>mRNA_P-wetherbeei_contig1369.3.1 ID=mRNA_P-wetherbeei_contig1369.3.1|Name=mRNA_P-wetherbeei_contig1369.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:4135..4857- (Phaeothamnion wetherbeei SAG_119_79)
TCTCAACTACTTACCTTTACCGGGCACTCCATCGTGGGCAACACTATGAC
GCTGCACCACCAGCACGCGCGCGGGGGAACGTCGCGGCGACGCTCGAGAG
AGCTCCGAGAGACCTCGCTCGAGCTGCGCGAAGGCAAGATTGACAAAGCC
ATTGCGCGCGACGAGAGCGCTCTTTACGCCGCAGCCGACGCCAAGCTTCC
CGCCGACCCGAAAGTCCTCTTGCGATGGCAGCCTTTGATGGCGCACCCGC
TGCCAATGTCGTACGCTCGGTTTCGAGAAGAAGCGCTTCTTCGGCGTCTG
TGCGCTCTGGCGCCGGAACGCCGCGCCCACGCCGCGGTGGCTCACGGAAG
CGCATGGTGCATCGAGGAGCTTTACCGGCTCGGCTGCTCGATGGACGCAC
GCGACACAACTGGACGCACGGCACTGCACGTCGCCGCGGGGCTCAACGAC
GCCGCCGCGGTCTCCGCACTCCTCAACGCCGGCGCCGATCCTTTCGCCGT
GACCGATGCGGGCACGACCGTCTTCCGCAGCGCTGTGGCTGGCGGCGGGA
ACGACTGTGCTGCCGCATGGCTCCTCCGTGCCCGTGGGATCGAAATGGAC
CCGCCGCACCTCCGGCCGGAGCCGCTTTGCTTCTTGGACGCGGAGGTCAG
GCGGCCGCGGCGCGCAATGGACGACCGGGCGGACTACCTCGGGAGAGGTT
ACGCGTATGCTGGGCAATACTGA
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