mRNA_P-wetherbeei_contig1369.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1369.2.1
Unique NamemRNA_P-wetherbeei_contig1369.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: D7G2L4_ECTSI (Protein trm112, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.760e-49
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERP---------DDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRLITHNML+SN++GVE GYPLGI+  K EE+E+EF+PDF+ NML K++W+A R AA+AL             GGE P         D+ +LRRVHHAL+EVH++EG L+CPETGR+FP+  G+PNMLLH+DE+
Sbjct:    1 MRLITHNMLKSNIKGVESGYPLGIEVVKMEEQELEFNPDFIRNMLAKLEWDAFRAAATAL-----------EAGGELPEEVTEEMKGDEEVLRRVHHALMEVHLVEGELVCPETGRKFPVRQGVPNMLLHEDEI 123
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: W7TQC2_9STRA (TRM112-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.880e-48
Identity = 76/125 (60.80%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRLITHNML+SNV+GV  G+PL I+A+K E +E EF+ +FV N+L K+DW ALRGA+  LG+++LP   D      + DD+ L+ VH  LL+VHVLEG+L+CPETGRRFPI+ GIPNMLLH+DEV
Sbjct:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMD---EANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: A0A6A4KS84_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KS84_9ERIC)

HSP 1 Score: 157 bits (397), Expect = 2.550e-47
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRL+THNML SN++GV  G+PL I+A K  E++++F+PDF+ NM  K+DW AL  A+ ALG  DLP A+   G      D  LRR HHALL++H+ EGAL+CPETGRRFP+  GIPNMLLH+DEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLQIEAVKVVEKQVDFNPDFLKNMFSKVDWTALAAASKALGYADLPEAA---GADMLDSDDFLRRFHHALLQLHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: A0A7S3UZQ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZQ9_HETAK)

HSP 1 Score: 157 bits (397), Expect = 4.210e-47
Identity = 75/126 (59.52%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVE-DLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRLITHNML+SN+ GV  G+PL I+AQ  E +EI+F+P+F+ NML K++WEALR A S LG+  +LPPA ++    ++ D+  L+ VHH LLE+HV EG L+CPETGR+FP+ GGIPNMLLH+DEV
Sbjct:   14 MRLITHNMLQSNISGVTNGFPLTIEAQTYEIQEIDFNPEFIQNMLPKLEWEALRSAISNLGLSAELPPADEVTDEMKQ-DEEFLKVVHHVLLEIHVQEGDLVCPETGRKFPVKGGIPNMLLHEDEV 138
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: A0A078IBN3_BRANA (BnaA07g10580D protein n=5 Tax=Brassica TaxID=3705 RepID=A0A078IBN3_BRANA)

HSP 1 Score: 154 bits (388), Expect = 6.560e-46
Identity = 70/125 (56.00%), Postives = 97/125 (77.60%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRLITHNML  N++GV+ G+PL I+A+K  E+E++F+PDF+ +M  KI+W+AL  AA ++G  +LP  S      E  D+  LR++HHALLE+H+ EGAL+CPETGR+FP++ GIPNMLLH+DEV
Sbjct:    1 MRLITHNMLSCNIKGVKNGFPLKIEAEKVIEKEVDFNPDFLRHMFAKIEWKALVEAARSMGYAELPEDSPDATVIESADETFLRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV 125
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: A0A2J6L5C0_LACSA (Uncharacterized protein n=5 Tax=Asteraceae TaxID=4210 RepID=A0A2J6L5C0_LACSA)

HSP 1 Score: 153 bits (386), Expect = 1.240e-45
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRL+THNML SN++GV  G+PL I+ +K  E++++F+PDF+ NM  KIDW+AL  A+  +G  +LP   ++P       D  L++ HHALLE+H+ EGAL+CPETGRRFP++ GIPNMLLH+DEV
Sbjct:    1 MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIDWKALADASKIMGYAELP--EEVPDASVLDSDEFLQKFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 123
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: S8EDW2_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EDW2_9LAMI)

HSP 1 Score: 152 bits (384), Expect = 2.430e-45
Identity = 73/125 (58.40%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRLITHNML SN++GV  G+PL I+A K  E+ ++F+PDF+ NM  KI+W AL  A+  LG  DLP  SD         DA LR  HHALLE+H+ EGAL+CPETGR+FP+  GIPNMLLH+DEV
Sbjct:    1 MRLITHNMLSSNIKGVSNGFPLRIEAAKVVEKAVDFNPDFLKNMFSKIEWNALVEASRTLGYSDLPENSD---PSMLDSDAFLRSFHHALLELHLEEGALVCPETGRKFPVSKGIPNMLLHEDEV 122
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: UPI001C25C317 (multifunctional methyltransferase subunit TRM112 homolog A-like n=6 Tax=Salvia TaxID=21880 RepID=UPI001C25C317)

HSP 1 Score: 152 bits (384), Expect = 2.670e-45
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRL+THNML SN++G+  G+PLGI+ +KTEE+E+E + DF+ NM  K++W+AL  AA  LG  +LP   D         D  LRR HHALLE+H+ EGAL+CPETGR+FP++ GIPNMLLH+DE+
Sbjct:    1 MRLLTHNMLSSNIKGLTSGFPLGIEVEKTEEKEVEMNADFLRNMFAKVEWKALVEAAKTLGYTELP---DNVEPSMLDSDEFLRRFHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEI 122
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: UPI000CECF6A6 (multifunctional methyltransferase subunit TRM112 homolog A n=1 Tax=Morus notabilis TaxID=981085 RepID=UPI000CECF6A6)

HSP 1 Score: 151 bits (381), Expect = 6.950e-45
Identity = 69/125 (55.20%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRL+THNML SNV+GV  G+PLGI+ +K  E+++E   DF++N+  KI+W+AL  A+ A+G  +LP  +D         D  LR+ HHALLE+H+ EGAL+CPETGRRFP++ GIPNMLLH+DEV
Sbjct:    1 MRLLTHNMLSSNVKGVTNGFPLGIEVEKVVEKQVELSADFLINIFSKIEWKALVDASRAVGYAELPDQAD---ASMLDSDEFLRKFHHALLELHLEEGALLCPETGRRFPVNKGIPNMLLHEDEV 122
[Close]
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Match: A0A2R6Q0E5_ACTCC (Multifunctional methyltransferase subunit TRM112-like protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q0E5_ACTCC)

HSP 1 Score: 150 bits (380), Expect = 9.860e-45
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDWEALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGALICPETGRRFPIHGGIPNMLLHDDEV 375
            MRL+THNML SN++GV  G+PL I+A+K  E+ ++F+PDF+ N+  KIDW+AL  AA A+G  +LP  +D         D  LR +HHALL++H+ EGAL+CPETGRRFP++ GIPNMLLH+DEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLLIEAEKVVEKPVDFNPDFLRNIFPKIDWKALVAAARAVGYGELPDTAD---AAMLESDDFLRHLHHALLQLHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1369.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2L4_ECTSI2.760e-4956.72Protein trm112, putative n=2 Tax=Ectocarpus TaxID=... [more]
W7TQC2_9STRA3.880e-4860.80TRM112-like protein n=1 Tax=Nannochloropsis gadita... [more]
A0A6A4KS84_9ERIC2.550e-4758.40Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
A0A7S3UZQ9_HETAK4.210e-4759.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A078IBN3_BRANA6.560e-4656.00BnaA07g10580D protein n=5 Tax=Brassica TaxID=3705 ... [more]
A0A2J6L5C0_LACSA1.240e-4554.40Uncharacterized protein n=5 Tax=Asteraceae TaxID=4... [more]
S8EDW2_9LAMI2.430e-4558.40Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
UPI001C25C3172.670e-4556.00multifunctional methyltransferase subunit TRM112 h... [more]
UPI000CECF6A66.950e-4555.20multifunctional methyltransferase subunit TRM112 h... [more]
A0A2R6Q0E5_ACTCC9.860e-4556.00Multifunctional methyltransferase subunit TRM112-l... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1369contigP-wetherbeei_contig1369:2124..2792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2L4
Preferred nameTRMT112
PFAMsTrm112p
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K15448
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035265,GO:0036211,GO:0036265,GO:0040007,GO:0042127,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234
Exons2
Evalue4.53e-50
EggNOG OGsKOG1088@1|root,KOG1088@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0434/Trm112
Ec32 orthologEc-11_002670.1
Descriptionpeptidyl-glutamine methylation
Cds size387
COG categoryS
BRITEko00000,ko03012,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.809675-CDS-P-wetherbeei_contig1369:2123..22381683185994.809675-CDS-P-wetherbeei_contig1369:2123..2238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1369 2124..2238 +
1683185994.8257449-CDS-P-wetherbeei_contig1369:2520..27921683185994.8257449-CDS-P-wetherbeei_contig1369:2520..2792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1369 2521..2792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1369.2.1prot_P-wetherbeei_contig1369.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1369 2124..2792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1369.2.1

>prot_P-wetherbeei_contig1369.2.1 ID=prot_P-wetherbeei_contig1369.2.1|Name=mRNA_P-wetherbeei_contig1369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MRLITHNMLRSNVRGVEQGYPLGIDAQKTEEREIEFDPDFVVNMLGKIDW
EALRGAASALGVEDLPPASDLPGGGERPDDALLRRVHHALLEVHVLEGAL
ICPETGRRFPIHGGIPNMLLHDDEVPDA*
back to top

mRNA from alignment at P-wetherbeei_contig1369:2124..2792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1369.2.1 ID=mRNA_P-wetherbeei_contig1369.2.1|Name=mRNA_P-wetherbeei_contig1369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:2124..2792+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCTAATCACCCACAATATGCTCAGGTCTAATGTCCGAGGAGTGGA
GCAAGGTTATCCTCTTGGCATCGATGCCCAAAAGACGGAAGAAAGAGAAA
TCGAATTCGACCCTGGTGAGTCTTATTCGCTTCTGCGGCGTGTGTATCGT
GCCGCGTGGAATTGGATGCTGTCCTTCTCTGCAACCGCACGTTTTCCTTC
GACATCATTGAAGAGCCGGCTGCCTTCATTTTTTCCTTTTTTGGATCGAA
ATCGAACGCGTTCATATGTTTCTCACCATCACAATACGACCGGGCGAAAA
GCTTGAGATATGTCGCCTCTCTCTTCCTCTACCCTTTCTCAATCTTCAAC
CATATGTCGTGCAACGCCCGTCTTCCTGCCTCCTTCGCACGCCACAGACT
TCGTTGTCAACATGTTGGGAAAGATAGACTGGGAGGCGCTGCGCGGAGCG
GCTTCGGCCTTAGGAGTCGAAGACCTGCCGCCGGCGTCGGACCTGCCAGG
GGGGGGCGAACGACCCGATGATGCGCTCCTGCGACGCGTCCATCACGCGC
TGCTGGAGGTACATGTGCTGGAGGGCGCGCTGATCTGTCCGGAGACCGGC
AGGCGGTTTCCAATCCACGGAGGAATCCCCAATATGCTGCTGCACGACGA
CGAGGTGCCTGACGCATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1369:2124..2792+

>mRNA_P-wetherbeei_contig1369.2.1 ID=mRNA_P-wetherbeei_contig1369.2.1|Name=mRNA_P-wetherbeei_contig1369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:2124..2792+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCTAATCACCCACAATATGCTCAGGTCTAATGTCCGAGGAGTGGA
GCAAGGTTATCCTCTTGGCATCGATGCCCAAAAGACGGAAGAAAGAGAAA
TCGAATTCGACCCTGACTTCGTTGTCAACATGTTGGGAAAGATAGACTGG
GAGGCGCTGCGCGGAGCGGCTTCGGCCTTAGGAGTCGAAGACCTGCCGCC
GGCGTCGGACCTGCCAGGGGGGGGCGAACGACCCGATGATGCGCTCCTGC
GACGCGTCCATCACGCGCTGCTGGAGGTACATGTGCTGGAGGGCGCGCTG
ATCTGTCCGGAGACCGGCAGGCGGTTTCCAATCCACGGAGGAATCCCCAA
TATGCTGCTGCACGACGACGAGGTGCCTGACGCATGA
back to top