mRNA_P-wetherbeei_contig1369.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1369.1.1
Unique NamemRNA_P-wetherbeei_contig1369.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1369.1.1 vs. uniprot
Match: A0A835YQD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.480e-64
Identity = 91/128 (71.09%), Postives = 98/128 (76.56%), Query Frame = 1 
Query:    1 FFARDFVNSTWDVGVLWTGRDKVEVTKVFLRDDGSAIWLDGGKGKWKLDRKSRSLGVYREFPFGWAGLRIFSCRLLDNSCEHYLEGDVKGWGPWFALSLMGAWQAIRAGADLTKHGPAPWLAREPKEG 384
            FFARDF NSTW V +LW  R K ++TKVFLRDDG  +WLD GKG W+LD KSRSLG YR+F  GW G RIFS RLLDN  EHYLEG+VKGWGPWF L  MG WQAIR G DL KHGPAPWL RE  EG
Sbjct:  177 FFARDFANSTWAVAILWGARRKPQMTKVFLRDDGKVVWLDKGKGSWRLDTKSRSLGFYRDFFLGWKGKRIFSTRLLDNCNEHYLEGEVKGWGPWFPLKWMGQWQAIRLGVDLEKHGPAPWLQREAPEG 304
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BLAST of mRNA_P-wetherbeei_contig1369.1.1 vs. uniprot
Match: D7G6W6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.240e-38
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 FFARDFVNSTWDVGVLWT-GRDKVEVTKVFLRDDGSAIWLDGGKGKWKLDRKSRSLGVYREFPFGWAGLRIFSCRLLDNSCEHYLEGDVKGWGPWFALSLMGAWQAIRAGADLTKHGPAP-WLARE 372
            +F +DF ++TW V + W   + +V+ TKV L+ DG  +WLD GKG W L  KSR + +YR F   WAG+RIFS +LL+N+C+ YL G +KGW P+  LS MG WQA+R G  L ++ P P W +RE
Sbjct:  175 YFPKDFQDTTWTVAIQWNHSKYEVKTTKVALKADGEVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESRE 300
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BLAST of mRNA_P-wetherbeei_contig1369.1.1 vs. uniprot
Match: W7U6G3_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6G3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 9.050e-23
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:    1 FFARDFVNSTWDVGVL---WTGRDKVEVTKVFLRDDGSAIWLDGG-KGKWKLDRKSRSLGVYREFPFGWAGLRIFSCRLLDNSCEHYLEGDVKGWGPWFALSLMGAWQAIRAGADLTKHGPAPWLARE 372
            F    FVN+TW +G +   W    +V+ T+VF R+DG  IW++GG KG+W  D +S      RE    W G R +   L +    +Y++G V GW P+  LS+ G WQ  R      + G APW   E
Sbjct:   66 FRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEE 193
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BLAST of mRNA_P-wetherbeei_contig1369.1.1 vs. uniprot
Match: A0A4D9DF93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DF93_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.080e-21
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:    1 FFARDFVNSTWDVGVL---WTGRDKVEVTKVFLRDDGSAIWLDGG-KGKWKLDRKSRSLGVYREFPFGWAGLRIFSCRLLDNSCEHYLEGDVKGWGPWFALSLMGAWQAIRAGADLTKHGPAPWLARE 372
            F    FVN+TW +G +   W    +V+ T+VF R+DG  IW++GG KG+W  D +S      RE    W+G R +   L +    +Y++G V GW P+  LS+ G WQ  R      + G APW   E
Sbjct:  570 FRREQFVNTTWTLGTVSDGWNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTYDARSNVFRFGRESFLSWSGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEE 697
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1369.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YQD3_9STRA2.480e-6471.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G6W6_ECTSI3.240e-3848.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U6G3_9STRA9.050e-2336.72Uncharacterized protein (Fragment) n=3 Tax=Nannoch... [more]
A0A4D9DF93_9STRA2.080e-2136.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1369contigP-wetherbeei_contig1369:1140..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6W6
Model size390
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.32e-39
EggNOG OGs2CZXD@1|root,2SC0X@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011980.1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.780042-CDS-P-wetherbeei_contig1369:1139..15291683185994.780042-CDS-P-wetherbeei_contig1369:1139..1529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1369 1140..1529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1369.1.1prot_P-wetherbeei_contig1369.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1369 1140..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1369.1.1

>prot_P-wetherbeei_contig1369.1.1 ID=prot_P-wetherbeei_contig1369.1.1|Name=mRNA_P-wetherbeei_contig1369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
FFARDFVNSTWDVGVLWTGRDKVEVTKVFLRDDGSAIWLDGGKGKWKLDR
KSRSLGVYREFPFGWAGLRIFSCRLLDNSCEHYLEGDVKGWGPWFALSLM
GAWQAIRAGADLTKHGPAPWLAREPKEGEK
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mRNA from alignment at P-wetherbeei_contig1369:1140..1529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1369.1.1 ID=mRNA_P-wetherbeei_contig1369.1.1|Name=mRNA_P-wetherbeei_contig1369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:1140..1529- (Phaeothamnion wetherbeei SAG_119_79)
TTCTTCGCGCGCGACTTCGTCAACTCGACCTGGGACGTGGGCGTGCTCTG
GACCGGGCGGGACAAGGTGGAGGTCACCAAGGTGTTCCTGCGCGACGATG
GCTCGGCCATATGGCTCGACGGCGGCAAGGGCAAGTGGAAGCTCGACCGC
AAGAGCCGCAGCCTCGGCGTCTACCGGGAGTTTCCCTTCGGCTGGGCCGG
GCTGCGCATCTTCAGCTGCCGCCTCCTCGACAACAGCTGCGAGCACTATT
TGGAGGGAGACGTCAAGGGCTGGGGCCCGTGGTTCGCTTTGAGCCTCATG
GGTGCGTGGCAAGCGATCCGAGCCGGGGCTGATCTCACGAAGCACGGCCC
AGCTCCGTGGCTCGCACGGGAGCCCAAGGAGGGAGAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1369:1140..1529-

>mRNA_P-wetherbeei_contig1369.1.1 ID=mRNA_P-wetherbeei_contig1369.1.1|Name=mRNA_P-wetherbeei_contig1369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1369:1140..1529- (Phaeothamnion wetherbeei SAG_119_79)
TTCTTCGCGCGCGACTTCGTCAACTCGACCTGGGACGTGGGCGTGCTCTG
GACCGGGCGGGACAAGGTGGAGGTCACCAAGGTGTTCCTGCGCGACGATG
GCTCGGCCATATGGCTCGACGGCGGCAAGGGCAAGTGGAAGCTCGACCGC
AAGAGCCGCAGCCTCGGCGTCTACCGGGAGTTTCCCTTCGGCTGGGCCGG
GCTGCGCATCTTCAGCTGCCGCCTCCTCGACAACAGCTGCGAGCACTATT
TGGAGGGAGACGTCAAGGGCTGGGGCCCGTGGTTCGCTTTGAGCCTCATG
GGTGCGTGGCAAGCGATCCGAGCCGGGGCTGATCTCACGAAGCACGGCCC
AGCTCCGTGGCTCGCACGGGAGCCCAAGGAGGGAGAGAAG
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