mRNA_P-wetherbeei_contig13681.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13681.3.1
Unique NamemRNA_P-wetherbeei_contig13681.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A3C0TU88_9PROT (TIGR02300 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TU88_9PROT)

HSP 1 Score: 124 bits (312), Expect = 4.410e-34
Identity = 88/138 (63.77%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRPDDKPIADIKAVSPDDIEDDLED-DPETVSLEDLDEAXXXXXXXXXXXXXXXXXXXXXXXXXVDGDXXXXXXXXXXXXIVILPKPGTDD 411
            +AKPEWGTKRQCPACG RFYDLG ADPVVCIKC H+F PEVLLKPRR RPDDK     KA  PDD E++LED D +TVSL+DL   XXXXXXXXXXXXXXXX          DGD              ILPKP  DD
Sbjct:    1 MAKPEWGTKRQCPACGARFYDLGNADPVVCIKCSHSFAPEVLLKPRRGRPDDKIAESAKASVPDDDEEELEDSDLDTVSLDDL---XXXXXXXXXXXXXXXXLPDVDLNIDEDGDDSTLLDTDEEEDEDILPKPSNDD 135          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A3D3UBX1_9PROT (TIGR02300 family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UBX1_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 6.120e-22
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRPDD 156
            +AKPEWGTKRQCP+CG RFYDL + DP++CI C H F PE+LLKPRR RP++
Sbjct:    1 MAKPEWGTKRQCPSCGTRFYDLQQDDPIICINCSHEFMPEILLKPRRTRPEE 52          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A352K9Y8_9PROT (TIGR02300 family protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352K9Y8_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 2.480e-21
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRPDD 156
            +AKPEWGTKRQCP+CG RFYDL + DP++CI C H F PE+LLKPRR RP++
Sbjct:    1 MAKPEWGTKRQCPSCGTRFYDLQQDDPIICINCSHEFMPEILLKPRRTRPEE 52          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A2A5C761_9PROT (TIGR02300 family protein n=2 Tax=root TaxID=1 RepID=A0A2A5C761_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 2.710e-19
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLK----PRRVRPDDKPIAD----IKAVSPDDIEDDLEDDPETVSLEDLDEA 255
            +A PEWGTKRQCP CG RFYDLG  +P+VCI CEH F+PEV+LK    P  + P +K        +K V+ DDIE  +E D  TV L D D++
Sbjct:    1 MANPEWGTKRQCPKCGTRFYDLGNFEPIVCIDCEHKFKPEVILKSKMAPLELMPAEKTEDTEEELLKEVANDDIE--IEADDNTVVLSDDDDS 91          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A2A4TE70_9PROT (TIGR02300 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4TE70_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.540e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLK 132
            +A PEWG+KRQCP CG RFYDLGK DP+VCI CEH F+PEV+LK
Sbjct:    1 MANPEWGSKRQCPKCGTRFYDLGKDDPIVCIDCEHKFKPEVILK 44          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A2G4YNX4_9PROT (TIGR02300 family protein n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YNX4_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 2.230e-18
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRPDDKPIADIKAVSPDDIEDDLEDD 219
            +A PEWGTKRQCP CG RFYDLG  +P+VCI C+H F+PE++LK +        +  ++ VS DD EDD EDD
Sbjct:    1 MANPEWGTKRQCPKCGTRFYDLGNFEPIVCIDCDHKFKPEIILKSK--------MTPLEMVS-DDQEDDKEDD 64          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: UPI0011067CAD (FYDLN acid domain-containing protein n=1 Tax=Luteithermobacter gelatinilyticus TaxID=2582913 RepID=UPI0011067CAD)

HSP 1 Score: 84.0 bits (206), Expect = 2.490e-18
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRR 141
            +AKPEWGTKRQCP CG RFYDLG  DP++CI C+H F+PE++LK ++
Sbjct:    1 MAKPEWGTKRQCPKCGTRFYDLGNDDPIMCISCDHKFKPEIILKSKQ 47          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A501PNI7_9PROT (TIGR02300 family protein n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PNI7_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 2.770e-18
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRR 141
            +AKPEWGTKRQCP CG RFYDLG  DP++CI C+H F+PE++LK ++
Sbjct:    1 MAKPEWGTKRQCPKCGTRFYDLGNDDPIMCISCDHKFKPEIILKSKQ 47          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A6G6XCP8_9SPHN (TIGR02300 family protein n=1 Tax=Altererythrobacter sp. BO-6 TaxID=2604537 RepID=A0A6G6XCP8_9SPHN)

HSP 1 Score: 83.6 bits (205), Expect = 3.430e-18
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRP--DDKPIADIKAVSPDDIEDDLEDDPETVSLEDLDE 252
            +AKPEWGTKR CP CG RFYDLGK++PV CI+C   + PE +LKP++  P  +D+   D+ A S    +DDLED      LED+DE
Sbjct:    1 MAKPEWGTKRSCPKCGERFYDLGKSEPVACIECGEEWYPEPVLKPKQPIPFEEDEKKKDVDADSDLGGDDDLED------LEDIDE 80          
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Match: A0A7C1XVY5_9SPHN (TIGR02300 family protein n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A7C1XVY5_9SPHN)

HSP 1 Score: 83.2 bits (204), Expect = 4.470e-18
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLK----PRRVRPDDK 159
            +A PEWGTKRQCP CG RFYDLG  +P+VCI CEH F+PEV+LK    P  + P++K
Sbjct:    1 MANPEWGTKRQCPKCGTRFYDLGNFEPIVCIDCEHKFKPEVILKSKMAPLELMPEEK 57          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13681.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TU88_9PROT4.410e-3463.77TIGR02300 family protein n=1 Tax=Alphaproteobacter... [more]
A0A3D3UBX1_9PROT6.120e-2269.23TIGR02300 family protein (Fragment) n=1 Tax=Alphap... [more]
A0A352K9Y8_9PROT2.480e-2169.23TIGR02300 family protein n=2 Tax=Alphaproteobacter... [more]
A0A2A5C761_9PROT2.710e-1951.61TIGR02300 family protein n=2 Tax=root TaxID=1 RepI... [more]
A0A2A4TE70_9PROT1.540e-1875.00TIGR02300 family protein n=1 Tax=Alphaproteobacter... [more]
A0A2G4YNX4_9PROT2.230e-1854.79TIGR02300 family protein n=1 Tax=Paremcibacter con... [more]
UPI0011067CAD2.490e-1865.96FYDLN acid domain-containing protein n=1 Tax=Lutei... [more]
A0A501PNI7_9PROT2.770e-1865.96TIGR02300 family protein n=1 Tax=Emcibacter nanhai... [more]
A0A6G6XCP8_9SPHN3.430e-1852.33TIGR02300 family protein n=1 Tax=Altererythrobacte... [more]
A0A7C1XVY5_9SPHN4.470e-1861.40TIGR02300 family protein n=1 Tax=Sphingomonadales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13681contigP-wetherbeei_contig13681:1304..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1030157.AFMP01000031_gene2918
PFAMsFYDLN_acid
Model size414
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.73e-19
EggNOG OGsCOG4530@1|root,COG4530@2|Bacteria,1N42Z@1224|Proteobacteria,2UDI6@28211|Alphaproteobacteria,2K62H@204457|Sphingomonadales
DescriptionProtein of unknown function (FYDLN_acid)
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.648744-CDS-P-wetherbeei_contig13681:1303..17171683185994.648744-CDS-P-wetherbeei_contig13681:1303..1717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13681 1304..1717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13681.3.1prot_P-wetherbeei_contig13681.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13681 1304..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13681.3.1

>prot_P-wetherbeei_contig13681.3.1 ID=prot_P-wetherbeei_contig13681.3.1|Name=mRNA_P-wetherbeei_contig13681.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
VAKPEWGTKRQCPACGGRFYDLGKADPVVCIKCEHAFEPEVLLKPRRVRP
DDKPIADIKAVSPDDIEDDLEDDPETVSLEDLDEADVDEDDDIAAVADIP
DIEIDDLDDEVDGDDNTLLETDDDDDIVILPKPGTDD*
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mRNA from alignment at P-wetherbeei_contig13681:1304..1717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13681.3.1 ID=mRNA_P-wetherbeei_contig13681.3.1|Name=mRNA_P-wetherbeei_contig13681.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig13681:1304..1717+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCAAACCTGAATGGGGAACCAAGCGGCAATGCCCGGCATGTGGCGG GCGCTTTTACGATTTAGGCAAGGCCGATCCTGTCGTTTGCATTAAGTGCG AGCATGCGTTCGAACCCGAGGTGCTGCTGAAACCACGCCGGGTTCGGCCC GACGACAAGCCAATTGCGGACATTAAAGCCGTATCGCCGGATGACATCGA AGATGATCTGGAGGACGATCCCGAAACTGTCTCGCTGGAAGATCTTGATG AAGCGGATGTGGACGAGGATGATGATATCGCTGCGGTTGCCGACATTCCG GATATTGAGATAGATGATCTGGATGACGAAGTCGATGGCGACGATAACAC GCTGCTGGAAACAGACGATGATGACGATATTGTTATCCTGCCAAAGCCGG GCACTGACGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13681:1304..1717+

>mRNA_P-wetherbeei_contig13681.3.1 ID=mRNA_P-wetherbeei_contig13681.3.1|Name=mRNA_P-wetherbeei_contig13681.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig13681:1304..1717+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCAAACCTGAATGGGGAACCAAGCGGCAATGCCCGGCATGTGGCGG
GCGCTTTTACGATTTAGGCAAGGCCGATCCTGTCGTTTGCATTAAGTGCG
AGCATGCGTTCGAACCCGAGGTGCTGCTGAAACCACGCCGGGTTCGGCCC
GACGACAAGCCAATTGCGGACATTAAAGCCGTATCGCCGGATGACATCGA
AGATGATCTGGAGGACGATCCCGAAACTGTCTCGCTGGAAGATCTTGATG
AAGCGGATGTGGACGAGGATGATGATATCGCTGCGGTTGCCGACATTCCG
GATATTGAGATAGATGATCTGGATGACGAAGTCGATGGCGACGATAACAC
GCTGCTGGAAACAGACGATGATGACGATATTGTTATCCTGCCAAAGCCGG
GCACTGACGATTAG
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