mRNA_P-wetherbeei_contig1367.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1367.2.1
Unique NamemRNA_P-wetherbeei_contig1367.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1367.2.1 vs. uniprot
Match: A0A7S1UNJ0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNJ0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.000e-22
Identity = 87/305 (28.52%), Postives = 137/305 (44.92%), Query Frame = 1 
Query:    4 QNGAFITRD--DGTWYQRHDGSQQYETT-TCTLKRFMAEEARTCLASHHVLLIGDSIQRYLFLGLVYLIEHGSWAPRF-------PMSSTDPKADPSESCLHKDS----------WKQMHVAIGGK----AFNGNMDCQCARLDPERSTENMFYSS-------ADNSI----KLSFLSNVGTYPVHWWNRTRSKGGAGCSDDSS----CDLTPAAWDELQKRAEKEDWDTVGSIA----DLLRPDAATGESAVSKLLPDVDIALFNRGAWGKLGEDEGKRIMEGLFALTQQAGRRKGQEGRCYWR 789
            ++GAF++R   +  W  R DGSQ+      C LKR+ A EAR CLA HH+ +IGDS+ RY +LGLV+LIE+G    RF            + K +P +  LH +           W+ M++ +GG      FNG M C CA+LD + +TE  +  S        DN I      +  + V     +   +       G  DD +          ++D   + +++ + + +        D   P      S + +   DVDI ++NRG W ++   +G  + E +       G   G EGRC++R
Sbjct:  189 RDGAFLSRPTTEVIWKTRGDGSQELTYPHMCRLKRYTATEARQCLAGHHIAVIGDSLSRYQYLGLVHLIENGEHPKRFGRRDDTGKCQHVNEKGEP-QCTLHGEKNVCFEGTYRDWQAMYMDVGGGEDGGVFNGRMQCSCAQLDKKNTTEESYTQSFHYVSDIVDNMIIGENSAAAAATVDEKNGNQRIKMTMFNEVGWYDDPAPLNLFSFNNCSYDGSCRHSKEYNDELIARAYNKGWDWSAPLKKALNSTLRRDFGDVDITIYNRGLWNQI---KGPTLAELMPLFYDWTG---GTEGRCFYR 486
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BLAST of mRNA_P-wetherbeei_contig1367.2.1 vs. uniprot
Match: E1Z6I3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6I3_CHLVA)

HSP 1 Score: 72.8 bits (177), Expect = 2.400e-11
Identity = 53/155 (34.19%), Postives = 68/155 (43.87%), Query Frame = 1 
Query:   85 CTLKRFMAEEARTCLASHHVLLIGDSIQRYLFLGLVYLIEHGSWAPRFPMSSTDPKADPSESCLHKDSWK---QMHVAIGGKAFNGNMDCQCARLDPERSTENMFYSSADNSIKLSFLSNVG-TYPVH--WWN---------RTRSKGGAGCSDD 504
            C L+RF AEEARTCLA   V+ +GDS+ RY FL L   + +GSW          P      + LHK +W    Q +      AF G M C C     E  T    Y     ++ L F    G  Y VH  W +         RT +  G+GCS +
Sbjct:   11 CRLRRFTAEEARTCLAGRPVVFVGDSLSRYSFLSLAAFLHNGSW----------PALTDCPNILHKHTWAISLQGYFQRSTDAFQGRMLCDCTTTKDESRT----YEYPRANLSLYFKWWTGWPYEVHGRWGHPPFRNATPCRTPACYGSGCSTE 151
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BLAST of mRNA_P-wetherbeei_contig1367.2.1 vs. uniprot
Match: A0A7S3HA34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HA34_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-5
Identity = 56/229 (24.45%), Postives = 91/229 (39.74%), Query Frame = 1 
Query:   79 TTCTLKRFMAEEARTCLASH--------HVLLIGDSIQRYLFLGLVYLIEHGSWAPRFPMSSTDPKADPSESCLHKD--SWKQMHVAIGGKAFNGNMDCQCARLDPERS-TENMFYSSADNSIKLSFLSNVGT---YPVHWW---NRTRSKGGAGCSDDSSCDLTPAAW--DELQKRAEKEDWDTVGSIADLLRPDAATGESAVSKLLPDVDIALFNRGAWGKLGEDEG 708
            +T    R M +E     A H        H++++GDS+ RY +L L+YLI+      +F  + T+P          KD  +W+  + A     F+ N  C C R+D  R   EN +Y + + +I +S++  +G       HW    N T  +  A   +       P  W  D LQ+                      T    ++KL P   + + N G W  L + +G
Sbjct:   17 STLAQGRLMFQELNVSTAQHYSKIMDNQHIVMVGDSLMRYQYLSLLYLIQFN----KFYTADTEPNI-----LREKDLNNWEAFYQA-SNSMFSPNEYCDCYRVDGARIFNENRYYYNKERNISVSYIQYLGEPHELHGHWMPADNETNHQFHAPYHE-----FVPFRWAFDTLQE----------------------TLFDHIAKLRPKPSVLVLNAGFWPNLWQVDG 208
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BLAST of mRNA_P-wetherbeei_contig1367.2.1 vs. uniprot
Match: R1E3U4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3U4_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 5.270e-5
Identity = 25/70 (35.71%), Postives = 35/70 (50.00%), Query Frame = 1 
Query:    7 NGAFITRDDGTWYQRHDGSQQYETTTCTLKRFMAEEARTCLASHHVLLIGDSIQRYLFLGLVYLIEHGSW 216
            N + +    G+W +  D   +Y    C L R  A   R CL   H+L +GDS+QRYL+L L   +  G W
Sbjct:    8 NTSSVATAAGSWSKDADSGFRYHARDCLLVRPSASRVRKCLRHRHLLFVGDSLQRYLYLTLANFLVTGEW 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1367.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1UNJ0_9STRA3.000e-2228.52Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
E1Z6I3_CHLVA2.400e-1134.19Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S3HA34_9STRA1.210e-524.45Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
R1E3U4_EMIHU5.270e-535.71Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1367contigP-wetherbeei_contig1367:6374..7255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog55529.EKX52919
Model size789
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.58e-24
EggNOG OGs2E3F4@1|root,2SAI0@2759|Eukaryota
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.2916646-CDS-P-wetherbeei_contig1367:6373..66581683185994.2916646-CDS-P-wetherbeei_contig1367:6373..6658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1367 6374..6658 +
1683185994.300598-CDS-P-wetherbeei_contig1367:6751..72551683185994.300598-CDS-P-wetherbeei_contig1367:6751..7255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1367 6752..7255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1367.2.1prot_P-wetherbeei_contig1367.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1367 6374..7255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1367.2.1

>prot_P-wetherbeei_contig1367.2.1 ID=prot_P-wetherbeei_contig1367.2.1|Name=mRNA_P-wetherbeei_contig1367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MQNGAFITRDDGTWYQRHDGSQQYETTTCTLKRFMAEEARTCLASHHVLL
IGDSIQRYLFLGLVYLIEHGSWAPRFPMSSTDPKADPSESCLHKDSWKQM
HVAIGGKAFNGNMDCQCARLDPERSTENMFYSSADNSIKLSFLSNVGTYP
VHWWNRTRSKGGAGCSDDSSCDLTPAAWDELQKRAEKEDWDTVGSIADLL
RPDAATGESAVSKLLPDVDIALFNRGAWGKLGEDEGKRIMEGLFALTQQA
GRRKGQEGRCYWR
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mRNA from alignment at P-wetherbeei_contig1367:6374..7255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1367.2.1 ID=mRNA_P-wetherbeei_contig1367.2.1|Name=mRNA_P-wetherbeei_contig1367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig1367:6374..7255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAACGGCGCTTTCATTACGCGGGACGACGGCACGTGGTACCAGCG
TCATGATGGCAGCCAGCAGTACGAAACAACGACCTGCACGCTGAAGCGCT
TCATGGCAGAGGAGGCGCGCACGTGCCTGGCATCGCACCACGTTCTTCTG
ATCGGCGACTCGATTCAACGCTACCTCTTCCTCGGACTGGTCTACTTAAT
CGAGCACGGATCGTGGGCACCACGGTTCCCGATGTCGTCCACAGACCCCA
AGGCGGACCCAAGTGAGTCATGCCTCCACAAAGACGTGCTCGGAGAACCC
ACCTGCTCGCCGCCGGGAGACCCCAGCGTACTGAGCGAGAATGACTGGGG
GTTTCTGTACGGCCACGCGCCAGAAAAGTCGTGGAAACAGATGCACGTCG
CCATCGGCGGCAAAGCGTTCAACGGCAACATGGATTGCCAATGCGCGCGA
CTCGATCCCGAGCGGAGCACCGAGAACATGTTCTACTCGTCCGCCGACAA
CAGCATCAAGCTCTCCTTCCTCTCCAACGTCGGCACGTATCCCGTCCACT
GGTGGAACCGCACCCGCAGCAAGGGCGGCGCGGGGTGCTCGGACGATTCC
TCCTGCGATCTGACGCCCGCTGCCTGGGATGAGCTGCAGAAGCGGGCTGA
GAAAGAAGACTGGGACACCGTCGGCTCTATCGCCGACCTGCTACGACCCG
ACGCCGCCACCGGCGAGTCTGCCGTCTCCAAACTGCTCCCAGATGTCGAC
ATTGCGCTCTTTAATCGGGGTGCCTGGGGCAAGCTGGGCGAGGACGAGGG
CAAGCGGATCATGGAGGGGCTGTTCGCGCTGACGCAACAGGCCGGCCGCA
GGAAAGGGCAAGAGGGCCGCTGCTACTGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1367:6374..7255+

>mRNA_P-wetherbeei_contig1367.2.1 ID=mRNA_P-wetherbeei_contig1367.2.1|Name=mRNA_P-wetherbeei_contig1367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig1367:6374..7255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAACGGCGCTTTCATTACGCGGGACGACGGCACGTGGTACCAGCG
TCATGATGGCAGCCAGCAGTACGAAACAACGACCTGCACGCTGAAGCGCT
TCATGGCAGAGGAGGCGCGCACGTGCCTGGCATCGCACCACGTTCTTCTG
ATCGGCGACTCGATTCAACGCTACCTCTTCCTCGGACTGGTCTACTTAAT
CGAGCACGGATCGTGGGCACCACGGTTCCCGATGTCGTCCACAGACCCCA
AGGCGGACCCAAGTGAGTCATGCCTCCACAAAGACTCGTGGAAACAGATG
CACGTCGCCATCGGCGGCAAAGCGTTCAACGGCAACATGGATTGCCAATG
CGCGCGACTCGATCCCGAGCGGAGCACCGAGAACATGTTCTACTCGTCCG
CCGACAACAGCATCAAGCTCTCCTTCCTCTCCAACGTCGGCACGTATCCC
GTCCACTGGTGGAACCGCACCCGCAGCAAGGGCGGCGCGGGGTGCTCGGA
CGATTCCTCCTGCGATCTGACGCCCGCTGCCTGGGATGAGCTGCAGAAGC
GGGCTGAGAAAGAAGACTGGGACACCGTCGGCTCTATCGCCGACCTGCTA
CGACCCGACGCCGCCACCGGCGAGTCTGCCGTCTCCAAACTGCTCCCAGA
TGTCGACATTGCGCTCTTTAATCGGGGTGCCTGGGGCAAGCTGGGCGAGG
ACGAGGGCAAGCGGATCATGGAGGGGCTGTTCGCGCTGACGCAACAGGCC
GGCCGCAGGAAAGGGCAAGAGGGCCGCTGCTACTGGCGC
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