mRNA_P-wetherbeei_contig13651.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13651.3.1
Unique NamemRNA_P-wetherbeei_contig13651.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A3C2B0Q9_9ACTN (Proteasome subunit beta n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B0Q9_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 3.750e-63
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDT-HSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MSMP F PGDDPG+SFP+LLRRIGLAP+ +  T   L+VPHATTCVA+R+ DGV+MAGDRRATSGNLISHR MEKVVQADQ SGVAIAGAAGPAMEMIKLFQLQLEHYEKVEG+SLSLEGKANQL
Sbjct:    1 MSMPLFTPGDDPGASFPELLRRIGLAPSASDSTVGELSVPHATTCVALRFGDGVVMAGDRRATSGNLISHRGMEKVVQADQHSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGSSLSLEGKANQL 125
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A6I3ENZ5_9ACTN (Proteasome endopeptidase complex n=3 Tax=root TaxID=1 RepID=A0A6I3ENZ5_9ACTN)

HSP 1 Score: 200 bits (508), Expect = 2.280e-62
Identity = 102/127 (80.31%), Postives = 113/127 (88.98%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVD---THSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            M+MPFF PGDDPGSSFP+LLRR+GLAP+  +       L+VPHATTCVA+R+ADGV+MAGDRRATSGNLISHR MEKVVQAD  SGVAIAGAAGPAMEM+KLFQLQLEHYEKVEG+ LSLEGKANQL
Sbjct:    1 MAMPFFTPGDDPGSSFPELLRRVGLAPSSVMSGSIAAELSVPHATTCVALRFADGVVMAGDRRATSGNLISHRGMEKVVQADDHSGVAIAGAAGPAMEMVKLFQLQLEHYEKVEGSHLSLEGKANQL 127
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A7X9KN48_9ACTN (Proteasome subunit beta n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KN48_9ACTN)

HSP 1 Score: 196 bits (498), Expect = 7.040e-61
Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHS-LAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MSMP F PG DPGSSFP+LL+R+G AP+  V  H  + VPHATTCVA+R+ADGV+MAGDRRATSGNLISHR MEKVVQAD  SGVAIAGAAGPAMEM+KLFQLQLEHYEKVEG++LSLEGKANQL
Sbjct:    1 MSMPMFTPGTDPGSSFPELLKRVGFAPSAPVAMHGEMVVPHATTCVALRFADGVVMAGDRRATSGNLISHRGMEKVVQADLHSGVAIAGAAGPAMEMVKLFQLQLEHYEKVEGSALSLEGKANQL 125
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A6I3X3Z2_9ACTN (Proteasome subunit beta n=2 Tax=root TaxID=1 RepID=A0A6I3X3Z2_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 1.030e-60
Identity = 103/125 (82.40%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGL-APAEAVDTHSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            M MP F PG+DPGSSFP+LLRR+GL A A    T  L VPHATTCVA+RY DGV+MAGDRRATSGNLISHR+MEKVVQAD+FSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEG+ LSLEGKANQL
Sbjct:    1 MPMPLFTPGNDPGSSFPELLRRVGLQAVAPTSGTLDLGVPHATTCVALRYLDGVVMAGDRRATSGNLISHRSMEKVVQADKFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGSFLSLEGKANQL 125
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A6N2DEG3_9ACTN (Proteasome endopeptidase complex n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DEG3_9ACTN)

HSP 1 Score: 195 bits (495), Expect = 1.950e-60
Identity = 97/124 (78.23%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MSMPFF PGDDPGSSFP+LLRRIGL+        ++ VPHATTCVA+ ++DGV++AGDRRATSGNLISHR+MEKVV+AD++SGVAIAGAAGPAMEMI+LFQLQLEHYEKVEGT++SLEGKANQL
Sbjct:    1 MSMPFFVPGDDPGSSFPELLRRIGLSDPATAGHGTIDVPHATTCVALTFSDGVVLAGDRRATSGNLISHRSMEKVVEADRYSGVAIAGAAGPAMEMIRLFQLQLEHYEKVEGTTISLEGKANQL 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A7K0VK70_9ACTN (Proteasome endopeptidase complex n=2 Tax=root TaxID=1 RepID=A0A7K0VK70_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 2.930e-60
Identity = 101/125 (80.80%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGL-APAEAVDTHSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MSMP F  GDDPG+SFP+LLRR+GL A A   D   L  PHATTC+A+R+ADGV+MAGDRRATSGNLISHR+MEK+VQAD FSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEG+SLSLEGKANQL
Sbjct:    1 MSMPMFAAGDDPGASFPELLRRMGLHAVAPTSDASDLLTPHATTCIALRFADGVVMAGDRRATSGNLISHRSMEKLVQADAFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGSSLSLEGKANQL 125
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A539E2N7_9ACTN (Proteasome endopeptidase complex n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E2N7_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 5.540e-60
Identity = 98/124 (79.03%), Postives = 109/124 (87.90%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            M+MPFF PGDDPGS+FP+LLRR+GL P  +     ++ PHATTCVA+RYADGV+MAGDRRATSGNLISHR MEKVVQAD+ SGVAIAGAAGP+MEMIKLF LQLEHYEKVEG  LSLEGKANQL
Sbjct:    1 MAMPFFTPGDDPGSNFPELLRRVGLGPDASDLAGPVSAPHATTCVALRYADGVVMAGDRRATSGNLISHRGMEKVVQADKHSGVAIAGAAGPSMEMIKLFALQLEHYEKVEGAPLSLEGKANQL 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A4R7HZY6_9ACTN (Proteasome endopeptidase complex n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7HZY6_9ACTN)

HSP 1 Score: 194 bits (492), Expect = 7.920e-60
Identity = 98/122 (80.33%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    7 MPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MPFF PGDDPGS+FP+LLRR+GL+      +  + VPHATTCVA+R+ADGV+MAGDRRATSGNLISHRAMEKVVQAD++SGVAIAGAAGPAMEMI+LFQLQLEHYEKVEG+ LSLEGKANQL
Sbjct:    1 MPFFEPGDDPGSNFPELLRRVGLS-GHGEQSGQIDVPHATTCVALRFADGVVMAGDRRATSGNLISHRAMEKVVQADRYSGVAIAGAAGPAMEMIRLFQLQLEHYEKVEGSPLSLEGKANQL 121
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A7K1B2Y4_9ACTN (Proteasome endopeptidase complex n=2 Tax=root TaxID=1 RepID=A0A7K1B2Y4_9ACTN)

HSP 1 Score: 192 bits (489), Expect = 2.320e-59
Identity = 100/130 (76.92%), Postives = 111/130 (85.38%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHSLA------VPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            M+MPFF PGDDPGS+FP+LLRR+GL P +A    + A      VPHATTCVA+RY DGV+MAGDRRATSGNLISHR MEKVVQAD+ SGVAIAGAAGPA+EMIKLF LQLEHYEKVEG +LSLEGKANQL
Sbjct:    1 MAMPFFTPGDDPGSNFPELLRRVGLGPQDAALASAAAAGGRLDVPHATTCVALRYTDGVVMAGDRRATSGNLISHRTMEKVVQADRHSGVAIAGAAGPAVEMIKLFALQLEHYEKVEGQALSLEGKANQL 130
[Close]
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Match: A0A6I3F9H6_9ACTN (Proteasome subunit beta n=6 Tax=root TaxID=1 RepID=A0A6I3F9H6_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 3.270e-59
Identity = 99/125 (79.20%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:    1 MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDT-HSLAVPHATTCVAMRYADGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGTSLSLEGKANQL 372
            MSMP F  G DPG++F +LLRR+GL+P  +V   H L +PHATTCVAMR  DGV+MAGDRRATSGNLISHR+MEKVVQAD+FSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEG +LSLEGKANQL
Sbjct:    1 MSMPIFEAGSDPGANFGELLRRVGLSPFGSVSVDHELVIPHATTCVAMRCRDGVVMAGDRRATSGNLISHRSMEKVVQADEFSGVAIAGAAGPAMEMIKLFQLQLEHYEKVEGQTLSLEGKANQL 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13651.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B0Q9_9ACTN3.750e-6384.00Proteasome subunit beta n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3ENZ5_9ACTN2.280e-6280.31Proteasome endopeptidase complex n=3 Tax=root TaxI... [more]
A0A7X9KN48_9ACTN7.040e-6180.00Proteasome subunit beta n=2 Tax=Actinobacteria Tax... [more]
A0A6I3X3Z2_9ACTN1.030e-6082.40Proteasome subunit beta n=2 Tax=root TaxID=1 RepID... [more]
A0A6N2DEG3_9ACTN1.950e-6078.23Proteasome endopeptidase complex n=1 Tax=Ilumatoba... [more]
A0A7K0VK70_9ACTN2.930e-6080.80Proteasome endopeptidase complex n=2 Tax=root TaxI... [more]
A0A539E2N7_9ACTN5.540e-6079.03Proteasome endopeptidase complex n=1 Tax=Acidimicr... [more]
A0A4R7HZY6_9ACTN7.920e-6080.33Proteasome endopeptidase complex n=2 Tax=Acidimicr... [more]
A0A7K1B2Y4_9ACTN2.320e-5976.92Proteasome endopeptidase complex n=2 Tax=root TaxI... [more]
A0A6I3F9H6_9ACTN3.270e-5979.20Proteasome subunit beta n=6 Tax=root TaxID=1 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13651contigP-wetherbeei_contig13651:1440..1811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_26050
Preferred nameprcB
PFAMsProteasome
Model size372
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03433
KEGG Pathwayko03050,map03050
KEGG ModuleM00342,M00343
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.79e-60
EggNOG OGsCOG0638@1|root,COG0638@2|Bacteria,2GJ60@201174|Actinobacteria,4CMX8@84992|Acidimicrobiia
Ec32 ortholog description20S proteasome beta 5 subunit
Ec32 orthologEc-07_007040.1
EC3.4.25.1
DescriptionComponent of the proteasome core, a large protease complex with broad specificity involved in protein degradation
Cds size372
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.0636573-CDS-P-wetherbeei_contig13651:1439..18111683185994.0636573-CDS-P-wetherbeei_contig13651:1439..1811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13651 1440..1811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13651.3.1prot_P-wetherbeei_contig13651.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13651 1440..1811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13651.3.1

>prot_P-wetherbeei_contig13651.3.1 ID=prot_P-wetherbeei_contig13651.3.1|Name=mRNA_P-wetherbeei_contig13651.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MSMPFFRPGDDPGSSFPDLLRRIGLAPAEAVDTHSLAVPHATTCVAMRYA
DGVLMAGDRRATSGNLISHRAMEKVVQADQFSGVAIAGAAGPAMEMIKLF
QLQLEHYEKVEGTSLSLEGKANQL
back to top

mRNA from alignment at P-wetherbeei_contig13651:1440..1811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13651.3.1 ID=mRNA_P-wetherbeei_contig13651.3.1|Name=mRNA_P-wetherbeei_contig13651.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13651:1440..1811+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATGCCCTTCTTCCGCCCGGGTGACGACCCCGGGTCGAGCTTCCC
CGACCTCCTGCGCCGCATCGGTCTGGCGCCCGCCGAGGCCGTCGACACGC
ACTCGCTCGCCGTCCCGCACGCCACCACGTGCGTGGCCATGCGCTACGCC
GATGGTGTGCTGATGGCCGGCGACCGCCGCGCCACGAGCGGCAACCTGAT
CAGCCACCGGGCGATGGAGAAGGTGGTGCAGGCCGATCAGTTCAGCGGCG
TCGCCATCGCCGGTGCCGCCGGCCCGGCGATGGAGATGATCAAGCTGTTC
CAGTTGCAGCTCGAGCACTACGAGAAGGTCGAAGGCACGTCGCTGAGCCT
CGAGGGCAAGGCCAACCAGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13651:1440..1811+

>mRNA_P-wetherbeei_contig13651.3.1 ID=mRNA_P-wetherbeei_contig13651.3.1|Name=mRNA_P-wetherbeei_contig13651.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13651:1440..1811+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATGCCCTTCTTCCGCCCGGGTGACGACCCCGGGTCGAGCTTCCC
CGACCTCCTGCGCCGCATCGGTCTGGCGCCCGCCGAGGCCGTCGACACGC
ACTCGCTCGCCGTCCCGCACGCCACCACGTGCGTGGCCATGCGCTACGCC
GATGGTGTGCTGATGGCCGGCGACCGCCGCGCCACGAGCGGCAACCTGAT
CAGCCACCGGGCGATGGAGAAGGTGGTGCAGGCCGATCAGTTCAGCGGCG
TCGCCATCGCCGGTGCCGCCGGCCCGGCGATGGAGATGATCAAGCTGTTC
CAGTTGCAGCTCGAGCACTACGAGAAGGTCGAAGGCACGTCGCTGAGCCT
CGAGGGCAAGGCCAACCAGCTG
back to top