mRNA_P-wetherbeei_contig1363.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA) HSP 1 Score: 273 bits (697), Expect = 6.190e-88 Identity = 145/228 (63.60%), Postives = 170/228 (74.56%), Query Frame = 1
Query: 16 LGACQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREG----IVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPYLF 687
L AF A P + R +S M KSK+IPF P P LD S+PG GFDPLGL++ID D+ +++VP ASMR+G +VD YWMREAE+KHCR+AMLAV GW+AVDMGLRLPG+KY+ L++ISAHDAMVS GNMV + H +LLE+I GAAIF AA GSGR+PG F DPLGLAKD AKSARY SE+KNGRLAMLAF GIATQ+VLTGHSFPYLF
Sbjct: 11 LAGASAFQAASPLKGAVRSSSSMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRKGDEPLVVDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGLSAISAHDAMVSGGNMVV--MLHF-----ALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYLF 231
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI) HSP 1 Score: 232 bits (592), Expect = 5.330e-72 Identity = 134/236 (56.78%), Postives = 161/236 (68.22%), Query Frame = 1
Query: 1 AALATL--GACQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMRE-GI-----VDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLT-SISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPY 681
A+LA L GAC AF AP+P ++R + + SKAIPFMP P+ LD +MPG GFDPLGLS ID DF EF+VP AA MRE G+ VD YWMREAE+KH R+A LAV GW+ VD G+R PG +Y ++ S+ AHD MV+SGNM L V LLE++GGAAIF AA+GSGRQPG F DPL L +PAK ARY +EI++ RLAM A GGIATQ+VL G FPY
Sbjct: 6 ASLAALVGGAC-AFTAPMPMHRAARSPAGALSMANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLL-------VVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPY 233
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA) HSP 1 Score: 214 bits (546), Expect = 2.980e-65 Identity = 119/201 (59.20%), Postives = 135/201 (67.16%), Query Frame = 1
Query: 82 TMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVP-KAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPY 681
T +A KSKA+PF+ APK LD S+P GFDPL LS ID DF MVP K R G+ A W REAEIKH R AMLAV GWVAVDMGLRLP +KY ++ AHD V SG+M L A+ LE++ GA I++ + GS R G F FDPLGL KDPAK ARY SEIKNGRLAMLAFGGIATQ+VLT FPY
Sbjct: 29 TQLAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVPTKWDESRTGL-SALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLL-------AIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.690e-58 Identity = 115/227 (50.66%), Postives = 143/227 (63.00%), Query Frame = 1
Query: 7 LATLGACQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGI-VDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLA-KDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPY 681
LA LG+ AF P A + + TM A KS A+PFMP P LD SMPG GFDPLG S+ID L ++P AASM + YWMREAE+KH R+ MLAV G+ AVDMG R PG+KY DLTS++AHDAMV+SGNM L AV L+E+I A+ +AA GSGR PG F DP+ K+ ++ R +E+ + RLAMLAF G+ TQ+V G FPY
Sbjct: 8 LAFLGSAVAFA---PAARRAARLTTTMAAEKSAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSEPLPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADLTSVTAHDAMVASGNMGFLFL-------AVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPY 224
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK) HSP 1 Score: 176 bits (446), Expect = 8.150e-50 Identity = 108/221 (48.87%), Postives = 138/221 (62.44%), Query Frame = 1
Query: 43 PLPKATSSRGTSV--TMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGIVDAS--YWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLT-SISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAK-DPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHS-FPYL 684
PL KA+ R S + + +KSK++PF+ AP LD S G GFDPL LS I DF + +VP+ S R + YWMREAE+KH R+AMLAV G VAVD+G RLPG+ + + ++ AHD MV+ G M L AGA E++GGAA+++AA GSGR+PG F DP L K DP + + T EIKNGRLAM+ GI TQ+ L G S FPYL
Sbjct: 21 PLIKASEPRRISSGPSALHLKSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVPRQFSGRPSSATLATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLA----AGAA---EVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK) HSP 1 Score: 171 bits (434), Expect = 1.040e-48 Identity = 113/229 (49.34%), Postives = 135/229 (58.95%), Query Frame = 1
Query: 1 AALATLGA-CQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPYL 684
AA A L A AF AP+ + T TMMA KS A+PFMP P LD+S+PGYAGFDP+G S D+L VD W+REAEIKH R+ MLAV G++A DMGL LPG + + S+ AHD + +G M Q L + A E G AI + GSGR PG F FDPLG +K P K+ YAT EI NGRLAMLAF GI TQS L +SFPY+
Sbjct: 5 AAFAALFAGADAFVAPMDGPKNVAKT--TMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFS----DWLS-------------VD---WLREAEIKHGRICMLAVVGYIATDMGLHLPGDMH-NYDSLLAHDQAIKNGAM-QQLLMGIGWA------ETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEKAQEYATKEINNGRLAMLAFSGIVTQSALYENSFPYM 203
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.890e-48 Identity = 105/223 (47.09%), Postives = 134/223 (60.09%), Query Frame = 1
Query: 16 LGACQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPYL 684
+GA AF P+P T +RG +V+MMA KSK+IPF+P P LD + PG GFDP+G ++ +P A +++EAEIKHCR+AMLA GW+ D + LPG + ++S++AHD V SG + Q L IA E I AI Q GSGRQPG F FDPLG AKD + +E+KNGRLAMLAF GI TQ+ LTGHSFPY+
Sbjct: 79 IGAAAAFVPPMPVTTRARG-AVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTS--------WLPLA------------YLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHA-VSSLAAHDVAVKSGALA-QILIWTSIA------EAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA) HSP 1 Score: 173 bits (438), Expect = 2.110e-48 Identity = 112/259 (43.24%), Postives = 143/259 (55.21%), Query Frame = 1
Query: 4 ALATLGACQAFHAPLPKATSSRGTSVTMMAVK--SKAIPFMPAPKGLDDSMPGYAGFDPLGLSAI-DGDFLEFMVPKAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAK-DPAKSARYATSEIKNGR-----------------------------LAMLAFGGIATQSVLTGHSFPY 681
ALA GA AF AP + T V M A + SK++PF+ K LD +M G A FDP+G S I D D+ +VP + + YWMREAE+KH R+ MLA GWVA D+G R PG Y +++++AHDAMV +GNM + + ++EI+ GAAI++AA GSGR PG + FDPLGL + + AK A YA EIKN R LAML F GI TQ+ LTGHSFPY
Sbjct: 28 ALAIAGAA-AFQAP----RKAGRTPVRMQAREGMSKSVPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPAWFNKEREGISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGISTLAAHDAMVKNGNMGF-------LLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA) HSP 1 Score: 166 bits (421), Expect = 8.540e-47 Identity = 102/223 (45.74%), Postives = 134/223 (60.09%), Query Frame = 1
Query: 16 LGACQAFHAPLPKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPYL 684
+GA AF +P T +RG +V+MMA KSK+IPF+P P LD + G GFDP+G ++ +P A +++EAEIKHCR+AMLA GW+ D + LPG + ++S++AHD V SG + Q L IA A+ ++ AI Q GSGRQPG F FDPLG AKD + +E+KNGRLAMLAF GI TQ+ LTGHSFPY+
Sbjct: 10 IGAAAAFVPLMPATTRTRG-AVSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTS--------WLPLA------------YLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHA-VSSLAAHDVAVKSGALA-QILIWTSIAEAISVI------AISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Match: A0A8J5XPQ1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPQ1_DIALT) HSP 1 Score: 166 bits (420), Expect = 1.130e-46 Identity = 99/224 (44.20%), Postives = 125/224 (55.80%), Query Frame = 1
Query: 22 ACQAFHAPL----PKATSSRGTSVTMMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASMREGIVDASYWMREAEIKHCRLAMLAVAGWVAVDMGLRLPGSKYVDLTSISAHDAMVSSGNMVPQSLPHVPIAGAVMLLEIIGGAAIFQAANGSGRQPGVFYFDPLGLAKDPAKSARYATSEIKNGRLAMLAFGGIATQSVLTGHSFPY 681
AC + A L P V MMA KSK++PF+ AP L G GFDPLG S L WMREAE+KH R+ MLAVAGW+ VD+G+ PG++Y L +++AH+AMV SGNM + AV +LE+ GG A+++ ANGSGR G + FDPLG A+D A EIKNGRLAM+AF GI TQ+ L+G PY
Sbjct: 2 ACVLYSAALAFAGPSGARPYRAGVEMMA-KSKSLPFLEAPPQLASQYAGDVGFDPLGFSKSGPQTLT------------------WMREAELKHSRVCMLAVAGWLVVDLGIHFPGAQYEGLRALTAHNAMVESGNMWLLLI-------AVSILELAGGLALYEQANGSGRAAGDYKFDPLGYAQDEATLQELQLKEIKNGRLAMIAFSGIVTQAALSGRGLPY 199 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1363.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1363.2.2 >prot_P-wetherbeei_contig1363.2.2 ID=prot_P-wetherbeei_contig1363.2.2|Name=mRNA_P-wetherbeei_contig1363.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp MMAVKSKAIPFMPAPKGLDDSMPGYAGFDPLGLSAIDGDFLEFMVPKAASback to top mRNA from alignment at P-wetherbeei_contig1363:4419..6403- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1363.2.2 ID=mRNA_P-wetherbeei_contig1363.2.2|Name=mRNA_P-wetherbeei_contig1363.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1985bp|location=Sequence derived from alignment at P-wetherbeei_contig1363:4419..6403- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1363:4419..6403- >mRNA_P-wetherbeei_contig1363.2.2 ID=mRNA_P-wetherbeei_contig1363.2.2|Name=mRNA_P-wetherbeei_contig1363.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig1363:4419..6403- (Phaeothamnion wetherbeei SAG_119_79)back to top |