mRNA_P-wetherbeei_contig13621.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13621.2.1
Unique NamemRNA_P-wetherbeei_contig13621.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7Z9PTU7_9BACT (30S ribosomal protein S16 n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PTU7_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.230e-21
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MVKLRLTRVGK+KQPSYRLVAA SR+PRDGRFIEILGHYNP+  P T+V KE+
Sbjct:    1 MVKLRLTRVGKRKQPSYRLVAANSRAPRDGRFIEILGHYNPMVEPATLVLKEE 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7X9AEV5_9BURK (30S ribosomal protein S16 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEV5_9BURK)

HSP 1 Score: 88.2 bits (217), Expect = 1.790e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MV+LRL RVG+KKQ S+RLVAA +RSPRDGRFIEILGHYNP T+PPT++FKED
Sbjct:    1 MVRLRLRRVGRKKQASFRLVAADARSPRDGRFIEILGHYNPRTDPPTILFKED 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A524AMW7_9CHLR (30S ribosomal protein S16 (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524AMW7_9CHLR)

HSP 1 Score: 82.4 bits (202), Expect = 1.310e-19
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MV++RL RVG KKQPSYR+V A  R+PRDGRFIEI+GHYNP T+PPT+V KE+
Sbjct:    1 MVRIRLCRVGAKKQPSYRVVVADQRAPRDGRFIEIIGHYNPRTDPPTMVIKEE 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7C3LX68_9CHLR (30S ribosomal protein S16 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3LX68_9CHLR)

HSP 1 Score: 82.0 bits (201), Expect = 3.820e-19
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MVK+RL+RVG K QPSYR+V A SRSPRDGRFIEI+G+YNP T+PPTV  KE+
Sbjct:    1 MVKIRLSRVGAKNQPSYRIVVANSRSPRDGRFIEIIGNYNPRTDPPTVAIKEE 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7C6XK36_9CHLR (30S ribosomal protein S16 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6XK36_9CHLR)

HSP 1 Score: 81.6 bits (200), Expect = 5.420e-19
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MV++RL RVG KKQPSYR+V A  RSPRDGRFIEI+GHYNP T P T+V KED
Sbjct:    1 MVRIRLARVGAKKQPSYRVVVADQRSPRDGRFIEIIGHYNPRTEPATMVVKED 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7C7V9L9_9CHLR (30S ribosomal protein S16 n=2 Tax=Anaerolineae TaxID=292625 RepID=A0A7C7V9L9_9CHLR)

HSP 1 Score: 82.0 bits (201), Expect = 6.340e-19
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MV++RL RVG + QPSYR+VAAP  + RDG+F+EILGHYNP TNPPTVV KED
Sbjct:    1 MVRIRLRRVGARNQPSYRIVAAPQGAKRDGKFLEILGHYNPRTNPPTVVLKED 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7C1F4L6_9CHLR (30S ribosomal protein S16 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C1F4L6_9CHLR)

HSP 1 Score: 81.3 bits (199), Expect = 7.300e-19
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            MVK+RL RVG KKQPSYR+V A SRSPRDGRF+E +GHYNP T+PPTV   ED
Sbjct:    1 MVKIRLRRVGAKKQPSYRVVVADSRSPRDGRFLETIGHYNPRTDPPTVHIDED 53
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7V3PKG8_9BACT (30S ribosomal protein S16 n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V3PKG8_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 7.690e-19
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 VKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            VKLRL R+GKKKQP YR+VAA SRSPRDGRFIE++G YNP TNPP V+ KED
Sbjct:    3 VKLRLQRLGKKKQPFYRIVAADSRSPRDGRFIEVVGTYNPRTNPPEVLIKED 54
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BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A6N8YVK2_9CHLR (30S ribosomal protein S16 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8YVK2_9CHLR)

HSP 1 Score: 80.9 bits (198), Expect = 7.720e-19
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            M+++RL RVGKKKQPSYR+V A  RSPRDGRF++ +GHYNPLT+PPTVV  E+
Sbjct:    1 MLRIRLRRVGKKKQPSYRIVVADVRSPRDGRFVDQVGHYNPLTDPPTVVVNEE 53
[Close]
BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Match: A0A7W1CPE8_9ACTN (30S ribosomal protein S16 (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CPE8_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 8.140e-19
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 VKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVFKED 159
            VKLRLTR+GK KQP YR+VAA SRSPRDGRFIEI+GHYNPLT+P ++    D
Sbjct:    3 VKLRLTRIGKTKQPQYRIVAADSRSPRDGRFIEIVGHYNPLTDPSSLTVDND 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13621.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PTU7_9BACT1.230e-2181.1330S ribosomal protein S16 n=1 Tax=Phycisphaerales ... [more]
A0A7X9AEV5_9BURK1.790e-2179.2530S ribosomal protein S16 n=1 Tax=Burkholderiales ... [more]
A0A524AMW7_9CHLR1.310e-1971.7030S ribosomal protein S16 (Fragment) n=1 Tax=Anaer... [more]
A0A7C3LX68_9CHLR3.820e-1973.5830S ribosomal protein S16 n=1 Tax=Chloroflexi bact... [more]
A0A7C6XK36_9CHLR5.420e-1973.5830S ribosomal protein S16 n=1 Tax=Chloroflexi bact... [more]
A0A7C7V9L9_9CHLR6.340e-1971.7030S ribosomal protein S16 n=2 Tax=Anaerolineae Tax... [more]
A0A7C1F4L6_9CHLR7.300e-1973.5830S ribosomal protein S16 n=1 Tax=Anaerolineae bac... [more]
A0A7V3PKG8_9BACT7.690e-1976.9230S ribosomal protein S16 n=1 Tax=Ignavibacteria b... [more]
A0A6N8YVK2_9CHLR7.720e-1969.8130S ribosomal protein S16 n=1 Tax=Chloroflexi bact... [more]
A0A7W1CPE8_9ACTN8.140e-1973.0830S ribosomal protein S16 (Fragment) n=1 Tax=Acidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13621contigP-wetherbeei_contig13621:1658..1816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog945713.IALB_0775
Preferred namerpsP
PFAMsRibosomal_S16
Model size159
Max annot lvl2|Bacteria
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue7.66e-18
EggNOG OGsCOG0228@1|root,COG0228@2|Bacteria
Descriptionmitochondrial translation
Cds size159
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.194209-CDS-P-wetherbeei_contig13621:1657..18161683185993.194209-CDS-P-wetherbeei_contig13621:1657..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13621 1658..1816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13621.2.1prot_P-wetherbeei_contig13621.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13621 1658..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13621.2.1

>prot_P-wetherbeei_contig13621.2.1 ID=prot_P-wetherbeei_contig13621.2.1|Name=mRNA_P-wetherbeei_contig13621.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
MVKLRLTRVGKKKQPSYRLVAAPSRSPRDGRFIEILGHYNPLTNPPTVVF
KED
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mRNA from alignment at P-wetherbeei_contig13621:1658..1816+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13621.2.1 ID=mRNA_P-wetherbeei_contig13621.2.1|Name=mRNA_P-wetherbeei_contig13621.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13621:1658..1816+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAAGTTGCGACTGACGCGAGTCGGCAAAAAGAAACAACCGAGCTA
TCGTCTCGTGGCTGCTCCCTCACGCAGCCCCCGTGACGGCCGATTCATCG
AGATTCTGGGACACTACAATCCCCTCACGAATCCCCCCACCGTCGTATTT
AAAGAAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13621:1658..1816+

>mRNA_P-wetherbeei_contig13621.2.1 ID=mRNA_P-wetherbeei_contig13621.2.1|Name=mRNA_P-wetherbeei_contig13621.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig13621:1658..1816+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAAGTTGCGACTGACGCGAGTCGGCAAAAAGAAACAACCGAGCTA
TCGTCTCGTGGCTGCTCCCTCACGCAGCCCCCGTGACGGCCGATTCATCG
AGATTCTGGGACACTACAATCCCCTCACGAATCCCCCCACCGTCGTATTT
AAAGAAGAT
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