mRNA_P-wetherbeei_contig13617.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13617.2.1
Unique NamemRNA_P-wetherbeei_contig13617.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F3YRF4_9PROT (CRM domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YRF4_9PROT)

HSP 1 Score: 112 bits (280), Expect = 6.890e-30
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP 267
            MD L+P ERR LKARAH+L+P++ +G+KGLT AV+AE++RAL AHELIKVR    ER  R + L EIC+R  A PVQHIGK+LVVYR KP
Sbjct:    1 MDGLSPIERRKLKARAHALDPIIHLGEKGLTAAVIAEVDRALGAHELIKVRAGGLERHAREAALAEICARLDAQPVQHIGKVLVVYRKKP 90          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F4C705_9PROT (CRM domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4C705_9PROT)

HSP 1 Score: 112 bits (280), Expect = 8.450e-30
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   10 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQ-AERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPA 279
            LT AERR+L+ARAH+L+PVV+VG+ GLT  VLAE ERAL  H+LIK+RV  A R DR ++LE +C + GAS VQHIGKILV+YRP P  PA
Sbjct:    2 LTAAERRSLRARAHALDPVVMVGEDGLTPGVLAETERALVTHQLIKIRVAGAGRHDRETVLETLCEQTGASAVQHIGKILVIYRPGPERPA 92          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A7C3NSZ4_9PROT (Ribosome assembly RNA-binding protein YhbY n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NSZ4_9PROT)

HSP 1 Score: 112 bits (279), Expect = 2.080e-29
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAERDDRRSILE-EICSRAGASPVQHIGKILVVYRPKPPE--PAKPPAPRVRKA 309
            M +LTPAERRAL+ARAH L PVV++G  GLT AVL EI+ AL +HELIKVRV  E   RR  L  EIC+   ASPVQHIG++LV+YRP+P E  P  PP P  R+A
Sbjct:    1 MKDLTPAERRALRARAHHLHPVVIIGGAGLTPAVLKEIDAALTSHELIKVRVPGEDRRRRERLAGEICAALDASPVQHIGRVLVLYRPRPEEAGPTTPPQPPPRRA 106          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A7C2UNE8_9PROT (YhbY family RNA-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UNE8_9PROT)

HSP 1 Score: 111 bits (277), Expect = 4.070e-29
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAE-RDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRVRKA 309
            M +LTPA RRAL+ARAH L PVV++G+ GLT AV  EI+  L +HELIK+RV  E R  RR  + EIC    A PVQ IGK+LVVYRP+PPEPA   APR R+A
Sbjct:    1 MIDLTPARRRALRARAHRLRPVVIIGEAGLTPAVRKEIDAGLRSHELIKIRVLGEDRARRREWMSEICRTLEAVPVQEIGKLLVVYRPRPPEPATAAAPRPRRA 104          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: UPI0019B88CCA (YhbY family RNA-binding protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019B88CCA)

HSP 1 Score: 109 bits (273), Expect = 8.700e-29
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP 267
            M+ L+P ER+ LKARAH+L+P+V +G KGLT AV+AEI RAL AHELIKVR    ERD+R S   EIC+R  A PVQHIGK+LV+YR KP
Sbjct:    1 MEGLSPTERKKLKARAHALDPIVHLGGKGLTEAVIAEIGRALDAHELIKVRAGGMERDERESAFTEICTRLAAQPVQHIGKVLVLYRKKP 90          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F4F0Z8_9PROT (CRM domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F0Z8_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.010e-28
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   10 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYR 258
            LTPAER+ALKA+AH LEPVV +G KGLTG V+AEIERAL AHELIKVR    +RD+R ++L+EIC+R+GA  VQ +GK+ V++R
Sbjct:    2 LTPAERKALKAKAHKLEPVVQIGAKGLTGEVVAEIERALKAHELIKVRAGGLQRDERDAVLKEICARSGAQAVQQVGKVFVLFR 85          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A536WMX7_9PROT (Ribosome assembly RNA-binding protein YhbY n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WMX7_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.160e-28
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQ-AERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP---PEPAKPPAPRVRK 306
            M  L+P  RR LKARAH+L+PVVL+G  GL+ AVLAEIER+L +HELIKVRV  A+R  R +ILEEIC R GA PVQH+GKI++++R  P   P  A+ P  R+R+
Sbjct:    1 MPGLSPTRRRELKARAHALDPVVLIGAAGLSPAVLAEIERSLKSHELIKVRVPGADRSGREAILEEICRRTGAQPVQHVGKIILLFRENPEPSPGSAEDPLRRIRR 106          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A238D6B8_THIDL (CRM domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A238D6B8_THIDL)

HSP 1 Score: 111 bits (277), Expect = 1.300e-28
Identity = 61/104 (58.65%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   10 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAE-RDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRVRKASPR 318
            L+PA+R A +A+AHSL+P VL+GD+GLT AV+AEI+RAL AH LIKVRV ++ R+ R ++++ IC   GA+PVQ+IGKILVV+RP P E A  PA +VR A+P+
Sbjct:    6 LSPADRSAKRAQAHSLKPTVLIGDQGLTDAVMAEIDRALTAHGLIKVRVASDDREARAAMMDGICENLGAAPVQNIGKILVVFRPIPAESADAPASKVRGAAPK 109          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A521V8H3_9PROT (Ribosome assembly RNA-binding protein YhbY n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521V8H3_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.430e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   10 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAK 282
            L+PAER+ALKARAH LEPVV +GD G + AV+AE+ERALAAHELIKVR     R+ R   L +IC R  A PVQHIGK+LV+YR KP EP K
Sbjct:    7 LSPAERKALKARAHRLEPVVWIGDDGASDAVIAEVERALAAHELIKVRAAGLAREARELALAQICERCAAQPVQHIGKVLVIYRKKP-EPKK 97          
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1G3H4C0_9RHOO (CRM domain-containing protein n=1 Tax=Rhodocyclales bacterium GWA2_65_19 TaxID=1802016 RepID=A0A1G3H4C0_9RHOO)

HSP 1 Score: 110 bits (274), Expect = 1.590e-28
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKP--PAPRVRKASPRKAADRALAARDYTARK 366
            M ELTP +RRAL+A AH L PVV +  KGL  +VL EI+R LA HELIKV++   ERDDR ++L EIC + G +P+QHIG ILV++R KP E A    PAPR R++S      +A+AA +   RK
Sbjct:    1 MTELTPTQRRALRAAAHHLSPVVSIAQKGLAESVLKEIDRCLATHELIKVKLHGIERDDREALLGEICGQLGCAPIQHIGNILVLWREKPAEEAAATQPAPRTRRSSKPLTKKQAVAALERPRRK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YRF4_9PROT6.890e-3064.44CRM domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4C705_9PROT8.450e-3064.84CRM domain-containing protein n=2 Tax=unclassified... [more]
A0A7C3NSZ4_9PROT2.080e-2961.32Ribosome assembly RNA-binding protein YhbY n=1 Tax... [more]
A0A7C2UNE8_9PROT4.070e-2960.58YhbY family RNA-binding protein n=1 Tax=Betaproteo... [more]
UPI0019B88CCA8.700e-2964.44YhbY family RNA-binding protein n=1 Tax=Candidatus... [more]
A0A1F4F0Z8_9PROT1.010e-2865.48CRM domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A536WMX7_9PROT1.160e-2858.49Ribosome assembly RNA-binding protein YhbY n=1 Tax... [more]
A0A238D6B8_THIDL1.300e-2858.65CRM domain-containing protein n=5 Tax=root TaxID=1... [more]
A0A521V8H3_9PROT1.430e-2865.22Ribosome assembly RNA-binding protein YhbY n=2 Tax... [more]
A0A1G3H4C0_9RHOO1.590e-2852.80CRM domain-containing protein n=1 Tax=Rhodocyclale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13617contigP-wetherbeei_contig13617:1388..1777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog85643.Tmz1t_1734
PFAMsCRS1_YhbY
Model size390
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.82e-28
EggNOG OGsCOG1534@1|root,COG1534@2|Bacteria,1N8K5@1224|Proteobacteria,2VVP0@28216|Betaproteobacteria,2KXBI@206389|Rhodocyclales
DescriptionRNA-binding protein containing KH domain possibly ribosomal protein
Cds size390
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.833286-CDS-P-wetherbeei_contig13617:1387..17771683185992.833286-CDS-P-wetherbeei_contig13617:1387..1777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13617 1388..1777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13617.2.1prot_P-wetherbeei_contig13617.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13617 1388..1777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13617.2.1

>prot_P-wetherbeei_contig13617.2.1 ID=prot_P-wetherbeei_contig13617.2.1|Name=mRNA_P-wetherbeei_contig13617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKV
RVQAERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRV
RKASPRKAADRALAARDYTARKAAPRIGRA
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mRNA from alignment at P-wetherbeei_contig13617:1388..1777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13617.2.1 ID=mRNA_P-wetherbeei_contig13617.2.1|Name=mRNA_P-wetherbeei_contig13617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13617:1388..1777+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGAACTAACCCCTGCAGAACGGCGCGCCCTCAAGGCGCGCGCCCA TTCCCTGGAACCTGTCGTGCTGGTCGGCGACAAGGGCCTGACCGGCGCTG TGCTGGCCGAAATCGAGCGAGCCCTCGCCGCCCACGAACTGATCAAGGTC CGCGTGCAGGCCGAAAGGGACGACCGCCGGTCGATCCTCGAGGAGATCTG CTCGCGCGCCGGGGCCTCTCCCGTGCAGCATATCGGCAAGATCCTCGTCG TCTACCGCCCCAAGCCACCCGAACCCGCCAAACCACCTGCCCCCAGGGTC CGCAAGGCATCGCCCAGGAAAGCGGCCGACCGTGCCCTCGCCGCCAGGGA CTACACGGCGCGGAAGGCCGCCCCGAGGATCGGGCGTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13617:1388..1777+

>mRNA_P-wetherbeei_contig13617.2.1 ID=mRNA_P-wetherbeei_contig13617.2.1|Name=mRNA_P-wetherbeei_contig13617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13617:1388..1777+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGAACTAACCCCTGCAGAACGGCGCGCCCTCAAGGCGCGCGCCCA
TTCCCTGGAACCTGTCGTGCTGGTCGGCGACAAGGGCCTGACCGGCGCTG
TGCTGGCCGAAATCGAGCGAGCCCTCGCCGCCCACGAACTGATCAAGGTC
CGCGTGCAGGCCGAAAGGGACGACCGCCGGTCGATCCTCGAGGAGATCTG
CTCGCGCGCCGGGGCCTCTCCCGTGCAGCATATCGGCAAGATCCTCGTCG
TCTACCGCCCCAAGCCACCCGAACCCGCCAAACCACCTGCCCCCAGGGTC
CGCAAGGCATCGCCCAGGAAAGCGGCCGACCGTGCCCTCGCCGCCAGGGA
CTACACGGCGCGGAAGGCCGCCCCGAGGATCGGGCGTGCG
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