mRNA_P-wetherbeei_contig13608.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13608.1.1
Unique NamemRNA_P-wetherbeei_contig13608.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A1Y1II08_KLENI (SET domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II08_KLENI)

HSP 1 Score: 102 bits (255), Expect = 6.710e-23
Identity = 66/166 (39.76%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDD---DIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAELRGMPAAALT--APTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            LLDYGFI   N  DRV  R +  LL AAR V G+  E FGG  GD    ++ PWQ   L QL + GP +   + +  P                 V+GR +AALR L+A + A+L+G     L    P   + ASNE++VL TV+G CAV L  + S+ + D ELL
Sbjct:  189 LLDYGFIIENNPHDRVDLRFDLNLLEAARVVGGVDGEQFGG--GDQKRGNVAPWQQTVLTQLRLAGPQAQLQVGIGGPEF---------------VEGRFMAALRTLYARTPADLKGKNLVQLQNPGPEGALGASNEKQVLHTVIGACAVALSRFPSTAKQDEELL 337          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: D7FW30_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW30_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 5.110e-22
Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAELRGMPAAALTA-PTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            L +YGF++    R+R  FR E K+L AAR  AGI  E FG     D +EPWQ R L +L ++GP  D  + L   + +              VDGRLLAALRV+F  S+ E+ G   + L+   T ++S   ERRVL+TV+GL +V  + + S+   D E+L
Sbjct:  365 LCNYGFVDINRRRERNHFRFEKKILRAARIHAGILDEQFGSKFEQDGLEPWQQRALIELKLDGPEQDLTVYLGGDSTSGRLP----------VDGRLLAALRVMFTRSRREMEGKTVSELSRYKTGKLSDYVERRVLATVLGLVSVYGQRWPSTQEQDEEIL 516          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A6H5JF28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF28_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.240e-22
Identity = 64/162 (39.51%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAELRGMPAAALTA-PTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            L +YGF++    R+R  FR E K+L AAR  AGI  E FG     D +EPWQ R L +L ++GP  D  + L   +                VDGRLLAALRV+F  S+ E+ G   + L+   T ++S   ERRVL+TV+GL +V  + + S+   D E+L
Sbjct:   78 LCNYGFVDINRRRERNHFRFEKKILRAARIHAGILDEQFGSKFEQDGLEPWQQRALIELKLDGPEQDLTVYLGGDSTNGRLP----------VDGRLLAALRVMFTRSRKEMEGKTVSELSRYKTGKLSDYVERRVLATVLGLVSVYGQRWPSTQEQDEEIL 229          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A444CXD6_ENSVE (Rubis-subs-bind domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CXD6_ENSVE)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-13
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEP--WQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAG---VDGRLLAALRVLFAGSKAELRGMPAAALTAPTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            LLDYGF+   N  D V  + +  LL AA   AG++   F        + P  WQ   L +LN+ G                  D A+V+ TL G   VDGRLLAALRVL + +K  ++      L +  A +  S E   L TV+ LC V L ++ + +  D  +L
Sbjct:   31 LLDYGFVIPSNPHDHVELKYDEALLDAASLAAGVSSSSF--------LSPSDWQQAILSRLNLRG------------------DEALVKVTLGGSGLVDGRLLAALRVLLSSNKETVQRHDLDTLMSEEAPLGMSTEVAALRTVIALCVVALESFPTKIMQDESIL 170          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A834ZHQ1_9MAGN (SET domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZHQ1_9MAGN)

HSP 1 Score: 77.4 bits (189), Expect = 1.350e-13
Identity = 58/169 (34.32%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAG---VDGRLLAALRVLFAGS-----KAELRGMPAAALTAPTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            LLDYGF+   N  D +  + +  LL AA   AG+A   F          PWQ + L QLN+EG                  +AA+++ +L G   V+GRLLAALRVL         K +L G+   ++ AP   +  SNE   L TV+ LC + L  + + L +D  LL
Sbjct:  317 LLDYGFVVPSNPYDCIELKYDGALLDAASIAAGVAAPNFSSPA------PWQQQILSQLNLEG------------------EAALLKVSLGGPELVEGRLLAALRVLLTNDMEKVQKHDLSGLKDLSVEAP---LGVSNEVAALRTVIALCVIALGHFPTKLMEDESLL 458          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: D8T1W6_SELML (SET domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T1W6_SELML)

HSP 1 Score: 76.6 bits (187), Expect = 2.410e-13
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIARE---PFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAELRGMPAAALTA--PTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDD 471
            LLDYGF+   N  DR+  R +  L+  AR +AG++R    PF           WQ+  L+QL +   G  + + L  P           EE    VDGRLLAALR+L A S+  L      +L A    + VS+ NE RVL T+ GL A++   + +++ +D
Sbjct:  275 LLDYGFVIPDNPHDRIELRYDGSLMENARMIAGLSRTGSPPFSSPAS------WQVDRLKQLGLADSGESQKVTLGGP-----------EE----VDGRLLAALRILHAESQEPLERRELVSLQAWGVESMVSSDNEERVLRTLCGLGAIVFNQFKTTIEED 415          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A7S3UTV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV7_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 3.970e-13
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGG-AGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAEL 336
            LL++GF    N  DRV  +   +LL AAR +  I +EPFG  AG  D+++PWQL+ L+ L +EG  +D  + +  P         M+      +D RLLAALR+LFA S AEL
Sbjct:   99 LLNHGFTAWPNPYDRVGVQFGQRLLQAARILMDIQKEPFGDPAGEQDEVQPWQLKKLKALKLEGLYADLEVEIGGP---------MI------IDPRLLAALRILFAESSAEL 196          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A176W8Z6_MARPO (SET domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W8Z6_MARPO)

HSP 1 Score: 75.9 bits (185), Expect = 4.590e-13
Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAALRVLFAGSKAELRGMPAAALTAPTAR--VSASNERRVLSTVVGLCA-VLLRAYGSSLRDD 471
            LLDYGF+ + N  DRV  + +  LL  AR   G++ +   G        PWQ   L QL ++G G+  ++ L  P                 V+GRLLAALR+L+A   +ELR      L    ++  +  +NER VL T+  L A VL R++ +++  D
Sbjct:  286 LLDYGFVVSENPHDRVELKYDPSLLDVARMAGGLSSQ---GPQSFTSPAPWQQALLAQLRLQGAGASLMVTLGGPDI---------------VEGRLLAALRILYAADVSELRHQDLEQLQQWGSKPPLGFANERNVLRTLAALSALVLTRSFATTVEQD 427          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: UPI001C4F28E8 (actin-histidine N-methyltransferase n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4F28E8)

HSP 1 Score: 74.3 bits (181), Expect = 1.600e-12
Identity = 58/169 (34.32%), Postives = 78/169 (46.15%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAG---VDGRLLAALRVLFAGS-----KAELRGMPAAALTAPTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            LLDYGF+   N  D +  R +  LL AA   AG+    F          PWQ + L QLN+EG                  + A ++ TL G   V+GRLLAALRVL A       K +L  +  A+  AP   +  SNE   L TV+ LC + L  + + + +D  LL
Sbjct:  315 LLDYGFVIPSNPYDCIELRYDGALLDAASMAAGVESPNFSSPA------PWQQQILSQLNLEG------------------EVANLKVTLGGTELVEGRLLAALRVLLASDMESIQKYDLNTLKLASAEAP---LGVSNEVAALRTVIALCVIALGHFPTKIMEDESLL 456          
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Match: A0A5N6RC22_9ROSI (SET domain-containing protein n=2 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RC22_9ROSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.130e-12
Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    1 LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEPWQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAG---VDGRLLAALRVLFAGS-----KAELRGMPAAALTAPTARVSASNERRVLSTVVGLCAVLLRAYGSSLRDDVELL 483
            LLDYGF+   N  D +  + ++ LL AA   AG++   F          PWQ ++L QLN++G                  +A +++ +L G   V+GRLLAALRVL A       K +L  + + +  AP   +  +NE     TV+ LC + L  + + L DD  +L
Sbjct:  289 LLDYGFVMPSNPYDNIELKYDSALLDAASMAAGVSSPNFSAPA------PWQQKFLSQLNLDG------------------EAPLLKVSLGGQELVEGRLLAALRVLLASDMETVHKHDLNTLKSLSAEAP---LGIANEVAAFRTVIALCVIALGHFPTKLMDDESVL 430          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1II08_KLENI6.710e-2339.76SET domain-containing protein n=1 Tax=Klebsormidiu... [more]
D7FW30_ECTSI5.110e-2239.51Set domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF28_9PHAE5.240e-2239.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A444CXD6_ENSVE1.280e-1333.13Rubis-subs-bind domain-containing protein n=1 Tax=... [more]
A0A834ZHQ1_9MAGN1.350e-1334.32SET domain-containing protein n=1 Tax=Tetracentron... [more]
D8T1W6_SELML2.410e-1334.57SET domain-containing protein n=4 Tax=Selaginella ... [more]
A0A7S3UTV7_HETAK3.970e-1341.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A176W8Z6_MARPO4.590e-1333.13SET domain-containing protein n=2 Tax=Marchantia p... [more]
UPI001C4F28E81.600e-1234.32actin-histidine N-methyltransferase n=2 Tax=Protea... [more]
A0A5N6RC22_9ROSI2.130e-1231.36SET domain-containing protein n=2 Tax=Carpinus fan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13608contigP-wetherbeei_contig13608:1022..1813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FW30
PFAMsRubis-subs-bind,SET
Model size483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.37e-23
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
Ec32 ortholog descriptionRubisco LSMT, substrate-binding domain
Ec32 orthologEc-01_003160.1
Descriptionpeptidyl-lysine monomethylation
Cds size483
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.3069239-CDS-P-wetherbeei_contig13608:1021..12611683185992.3069239-CDS-P-wetherbeei_contig13608:1021..1261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13608 1022..1261 -
1683185992.315445-CDS-P-wetherbeei_contig13608:1396..15761683185992.315445-CDS-P-wetherbeei_contig13608:1396..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13608 1397..1576 -
1683185992.3230677-CDS-P-wetherbeei_contig13608:1750..18131683185992.3230677-CDS-P-wetherbeei_contig13608:1750..1813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13608 1751..1813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13608.1.1prot_P-wetherbeei_contig13608.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13608 1022..1813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13608.1.1

>prot_P-wetherbeei_contig13608.1.1 ID=prot_P-wetherbeei_contig13608.1.1|Name=mRNA_P-wetherbeei_contig13608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
LLDYGFIEARNSRDRVCFRLETKLLTAARAVAGIAREPFGGAGGDDDIEP
WQLRYLQQLNIEGPGSDRIMALSLPTAAAMADAAMVEETLAGVDGRLLAA
LRVLFAGSKAELRGMPAAALTAPTARVSASNERRVLSTVVGLCAVLLRAY
GSSLRDDVELL
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mRNA from alignment at P-wetherbeei_contig13608:1022..1813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13608.1.1 ID=mRNA_P-wetherbeei_contig13608.1.1|Name=mRNA_P-wetherbeei_contig13608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig13608:1022..1813- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGACTATGGCTTCATAGAGGCAAGAAACTCGCGGGACCGGGTCTG CTTCCGGTTAGAGGTGAGGAAACGGAACGCCTTACGCCTCTTATTTGTTC GTCCGCGCTAGATCCAAGGATCTGGTTGTTATCTGTGCAGGCAGCGCAGT AGCATTCAGTTTTTGGGTGCTGGAGCGTTAGAGACGTCTATTGTTTCTTT GGCGATTCAGTGTCTCCTCATCGCCTCCCTCCGGCAGACCAAGCTCTTGA CAGCGGCGCGTGCCGTGGCCGGCATCGCGCGAGAACCGTTCGGCGGCGCC GGCGGTGACGACGACATTGAGCCATGGCAGCTGCGATACCTCCAGCAACT CAATATCGAGGGGCCCGGCTCGGATCGCATCATGGCCCTGAGCTTGCCGA CAGCAGCGGCGATGGCGGTGGGGATGGCAACAGCGGCGGCGGCCACGGTG CCAGCGATGGCGGTTACAAGCGGTGACGGTGTTGCTTCAGCATCGGCGGA GACGACTGCAGCATCGGCAACAGCGGCGGCGGCAGCGCTGGCGCCAGCGG AGGACGCGGCGATGGTGGAAGAAACGCTGGCGGGCGTGGACGGGCGACTG CTGGCTGCACTCCGCGTCCTTTTTGCGGGCTCCAAGGCGGAGCTGCGCGG AATGCCGGCGGCAGCGCTGACGGCGCCGACTGCACGGGTTTCGGCGTCCA ACGAGCGGCGCGTGCTGTCGACGGTCGTCGGGCTGTGCGCCGTGCTGCTG CGGGCCTATGGCTCGTCCCTCCGCGACGACGTTGAGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13608:1022..1813-

>mRNA_P-wetherbeei_contig13608.1.1 ID=mRNA_P-wetherbeei_contig13608.1.1|Name=mRNA_P-wetherbeei_contig13608.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig13608:1022..1813- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGACTATGGCTTCATAGAGGCAAGAAACTCGCGGGACCGGGTCTG
CTTCCGGTTAGAGACCAAGCTCTTGACAGCGGCGCGTGCCGTGGCCGGCA
TCGCGCGAGAACCGTTCGGCGGCGCCGGCGGTGACGACGACATTGAGCCA
TGGCAGCTGCGATACCTCCAGCAACTCAATATCGAGGGGCCCGGCTCGGA
TCGCATCATGGCCCTGAGCTTGCCGACAGCAGCGGCGATGGCGGACGCGG
CGATGGTGGAAGAAACGCTGGCGGGCGTGGACGGGCGACTGCTGGCTGCA
CTCCGCGTCCTTTTTGCGGGCTCCAAGGCGGAGCTGCGCGGAATGCCGGC
GGCAGCGCTGACGGCGCCGACTGCACGGGTTTCGGCGTCCAACGAGCGGC
GCGTGCTGTCGACGGTCGTCGGGCTGTGCGCCGTGCTGCTGCGGGCCTAT
GGCTCGTCCCTCCGCGACGACGTTGAGCTGCTG
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