mRNA_P-wetherbeei_contig13606.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13606.1.1
Unique NamemRNA_P-wetherbeei_contig13606.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13606contigP-wetherbeei_contig13606:6..1342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1338
Hectar predicted targeting categoryother localisation
Exons1
Cds size1335
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.2234812-CDS-P-wetherbeei_contig13606:5..13401683185992.2234812-CDS-P-wetherbeei_contig13606:5..1340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13606 6..1340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13606.1.1prot_P-wetherbeei_contig13606.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13606 6..1340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13606.1.1

>prot_P-wetherbeei_contig13606.1.1 ID=prot_P-wetherbeei_contig13606.1.1|Name=mRNA_P-wetherbeei_contig13606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=445bp
DKDRGIIDSSGGNGGSNDDGGGSIDGNGADSGNGGGSSKGSGGDGGSNGG
DGVGVGGGNEGGGSEGSGDGCSGDGNGCSGDGNGCGGGSGGGKNGGNGGG
GYGAEDASGGGGGNRSNGGSSSEEIRCPESVVVMPAASRLGDARVVEGAG
ECCITSTSDQMDIGGEGLHLPAQPAQPSPRPPPTSAVVDASSAGEDRAAP
SSRCLVDAASRPRGASQVEEAVPDTGSQPSEDLDQATAIAAAAAATAAAA
AVVPSVGVLPPSSQRVGGAMGSGIAPAVLLAAASRSVPAAATAAAGPAPV
APPVAALAAAETAPRQHDSVIEETAVPDAWGTHRDDAPSQPVFVAGSYWE
REEASAVPETAPPLISAVADAAAGDAIAGDAAAGDGDRAGGGAKSETDAD
DPGTEADEEELEETCLSLPLDPAAFEIGGGGRGGGGRGGGGGNGG
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mRNA from alignment at P-wetherbeei_contig13606:6..1342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13606.1.1 ID=mRNA_P-wetherbeei_contig13606.1.1|Name=mRNA_P-wetherbeei_contig13606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1337bp|location=Sequence derived from alignment at P-wetherbeei_contig13606:6..1342+ (Phaeothamnion wetherbeei SAG_119_79)
GACAAAGACAGAGGTATTATCGACTCCAGCGGCGGCAATGGCGGCAGCAA
TGACGACGGCGGCGGGAGCATTGATGGCAATGGGGCCGATAGCGGCAATG
GCGGCGGCAGCAGCAAGGGCAGCGGCGGCGATGGCGGCAGCAATGGTGGT
GACGGCGTTGGCGTCGGCGGCGGCAATGAGGGCGGCGGCAGTGAGGGCAG
CGGTGACGGCTGCAGTGGCGACGGCAACGGCTGCAGTGGCGACGGCAACG
GCTGCGGTGGTGGTAGTGGTGGCGGCAAAAACGGCGGCAACGGTGGAGGC
GGTTACGGCGCCGAAGACGCCAGTGGCGGTGGCGGTGGAAACCGCAGCAA
CGGCGGTAGCAGCAGTGAAGAGATCCGCTGCCCGGAGTCTGTGGTTGTTA
TGCCTGCTGCATCGCGCCTGGGCGACGCCAGGGTAGTGGAAGGTGCTGGC
GAGTGCTGTATCACCAGCACCAGTGACCAGATGGACATCGGCGGCGAAGG
CTTGCATCTGCCGGCACAGCCGGCGCAACCATCGCCACGACCGCCCCCGA
CATCGGCCGTGGTGGATGCGTCTTCGGCTGGTGAGGATAGGGCCGCGCCA
TCGTCTCGCTGCCTTGTCGACGCCGCGTCAAGGCCGCGCGGAGCGTCTCA
GGTGGAGGAGGCGGTGCCGGATACGGGTTCGCAGCCATCCGAAGACTTGG
ACCAGGCGACAGCCATTGCAGCGGCCGCGGCAGCTACCGCAGCGGCGGCG
GCAGTTGTACCGTCAGTAGGAGTGCTGCCTCCATCGTCACAGCGAGTGGG
TGGGGCGATGGGAAGCGGCATCGCACCAGCGGTGCTGCTTGCGGCGGCTT
CGCGGTCTGTACCCGCCGCTGCCACTGCCGCCGCCGGCCCCGCACCCGTT
GCTCCCCCTGTCGCTGCGCTAGCCGCAGCAGAGACGGCGCCGAGGCAGCA
CGACAGCGTCATCGAGGAAACCGCCGTGCCGGACGCCTGGGGGACACACC
GCGACGACGCGCCGAGCCAGCCCGTGTTTGTTGCGGGCTCCTATTGGGAG
CGGGAGGAAGCGAGCGCCGTACCAGAGACAGCGCCACCGCTCATTTCCGC
GGTGGCCGATGCGGCAGCGGGCGATGCAATAGCAGGCGACGCGGCAGCGG
GTGACGGTGACAGAGCTGGCGGCGGCGCCAAGTCTGAAACCGACGCCGAC
GACCCTGGTACCGAGGCGGATGAGGAAGAGCTGGAGGAGACGTGCCTCTC
GCTGCCGTTGGACCCGGCCGCGTTCGAAATCGGCGGCGGCGGCCGCGGCG
GCGGCGGCCGCGGCGGCGGCGGTGGTAATGGCGGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13606:6..1342+

>mRNA_P-wetherbeei_contig13606.1.1 ID=mRNA_P-wetherbeei_contig13606.1.1|Name=mRNA_P-wetherbeei_contig13606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig13606:6..1342+ (Phaeothamnion wetherbeei SAG_119_79)
GACAAAGACAGAGGTATTATCGACTCCAGCGGCGGCAATGGCGGCAGCAA
TGACGACGGCGGCGGGAGCATTGATGGCAATGGGGCCGATAGCGGCAATG
GCGGCGGCAGCAGCAAGGGCAGCGGCGGCGATGGCGGCAGCAATGGTGGT
GACGGCGTTGGCGTCGGCGGCGGCAATGAGGGCGGCGGCAGTGAGGGCAG
CGGTGACGGCTGCAGTGGCGACGGCAACGGCTGCAGTGGCGACGGCAACG
GCTGCGGTGGTGGTAGTGGTGGCGGCAAAAACGGCGGCAACGGTGGAGGC
GGTTACGGCGCCGAAGACGCCAGTGGCGGTGGCGGTGGAAACCGCAGCAA
CGGCGGTAGCAGCAGTGAAGAGATCCGCTGCCCGGAGTCTGTGGTTGTTA
TGCCTGCTGCATCGCGCCTGGGCGACGCCAGGGTAGTGGAAGGTGCTGGC
GAGTGCTGTATCACCAGCACCAGTGACCAGATGGACATCGGCGGCGAAGG
CTTGCATCTGCCGGCACAGCCGGCGCAACCATCGCCACGACCGCCCCCGA
CATCGGCCGTGGTGGATGCGTCTTCGGCTGGTGAGGATAGGGCCGCGCCA
TCGTCTCGCTGCCTTGTCGACGCCGCGTCAAGGCCGCGCGGAGCGTCTCA
GGTGGAGGAGGCGGTGCCGGATACGGGTTCGCAGCCATCCGAAGACTTGG
ACCAGGCGACAGCCATTGCAGCGGCCGCGGCAGCTACCGCAGCGGCGGCG
GCAGTTGTACCGTCAGTAGGAGTGCTGCCTCCATCGTCACAGCGAGTGGG
TGGGGCGATGGGAAGCGGCATCGCACCAGCGGTGCTGCTTGCGGCGGCTT
CGCGGTCTGTACCCGCCGCTGCCACTGCCGCCGCCGGCCCCGCACCCGTT
GCTCCCCCTGTCGCTGCGCTAGCCGCAGCAGAGACGGCGCCGAGGCAGCA
CGACAGCGTCATCGAGGAAACCGCCGTGCCGGACGCCTGGGGGACACACC
GCGACGACGCGCCGAGCCAGCCCGTGTTTGTTGCGGGCTCCTATTGGGAG
CGGGAGGAAGCGAGCGCCGTACCAGAGACAGCGCCACCGCTCATTTCCGC
GGTGGCCGATGCGGCAGCGGGCGATGCAATAGCAGGCGACGCGGCAGCGG
GTGACGGTGACAGAGCTGGCGGCGGCGCCAAGTCTGAAACCGACGCCGAC
GACCCTGGTACCGAGGCGGATGAGGAAGAGCTGGAGGAGACGTGCCTCTC
GCTGCCGTTGGACCCGGCCGCGTTCGAAATCGGCGGCGGCGGCCGCGGCG
GCGGCGGCCGCGGCGGCGGCGGTGGTAATGGCGGC
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