mRNA_P-wetherbeei_contig1360.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1360.1.1
Unique NamemRNA_P-wetherbeei_contig1360.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A482RSM2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSM2_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 1.910e-10
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 AIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A  G WR AW++   L  DV+  AGGNGHS +N+LW+IATR
Sbjct:   53 ATIGQWREAWKLTKQLDADVFEAAGGNGHSMTNTLWYIATR 93
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: D7FR88_ECTSI (Endo-1,3-beta-glucanase, C-terminal, family GH81 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR88_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-9
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 QAIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            QAI G W    + + ALP+DV+ TAGGNGHSR++ LWF+A R
Sbjct:  356 QAITGRWEDGRDGIMALPDDVFETAGGNGHSRTSMLWFVANR 397
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A835YN05_9STRA (Glyco_hydro81C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN05_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.480e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 QAIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            QAI G+WR A + +  LP+  +  AGGNGHSRSN LWFI+T+
Sbjct:  330 QAITGEWRLARDGILDLPDSAFEGAGGNGHSRSNMLWFISTQ 371
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S0BV03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BV03_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.130e-8
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 AIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A+ G    A ++ + LP +VY TAGGNGHS+SN+LWFI+TR
Sbjct:    5 AVVGHRTAALKLANNLPLEVYTTAGGNGHSKSNTLWFISTR 45
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S3L7Q4_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7Q4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.400e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 AIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A  G +  A + V+ALP+  + T+GGNGHSRSN+LW+I+TR
Sbjct:  914 ATGGHFDDALDKVNALPDGAFETSGGNGHSRSNTLWWISTR 954
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S1U813_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U813_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 QAIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            QA  G+   AW  +  +P+  Y T GGNGHSR+NSL++IATR
Sbjct:  883 QAAVGNTTAAWAGLDEIPDAAYLTPGGNGHSRANSLYWIATR 924
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S1YNF3_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNF3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.170e-6
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    4 AIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A AG    A   +  L  DV+ TAGGNGHSRSN+LW+IATR
Sbjct:  110 ASAGHRVEAAARLKNLTSDVFETAGGNGHSRSNTLWYIATR 150
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S4E4A1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4A1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.180e-6
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 QAIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            +A AGD  GAW+   AL    +  AGG+GHSRSN L++IATR
Sbjct:  721 KAAAGDRAGAWDAALALDGKAFDQAGGDGHSRSNLLYWIATR 762
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S3DNX2_9STRA (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNX2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.710e-6
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   28 AWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A +    LP DV+ TAGGNGHS +N+LW+IATR
Sbjct:  855 ALQRAKLLPTDVFETAGGNGHSMTNTLWYIATR 887
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BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Match: A0A7S0B1P1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B1P1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.500e-6
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   28 AWEMVSALPEDVYHTAGGNGHSRSNSLWFIATR 126
            A +   ALP  V+ +AGGNGHSR+N+LW+IATR
Sbjct:   95 AAQKAKALPSAVFESAGGNGHSRTNTLWYIATR 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A482RSM2_9ARCH1.910e-1056.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FR88_ECTSI1.660e-957.14Endo-1,3-beta-glucanase, C-terminal, family GH81 n... [more]
A0A835YN05_9STRA1.480e-857.14Glyco_hydro81C domain-containing protein n=1 Tax=T... [more]
A0A7S0BV03_9STRA7.130e-856.10Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3L7Q4_9STRA3.400e-753.66Endo-1,3(4)-beta-glucanase n=1 Tax=Amphora coffeif... [more]
A0A7S1U813_9STRA1.630e-652.38Endo-1,3(4)-beta-glucanase n=1 Tax=Phaeomonas parv... [more]
A0A7S1YNF3_9STRA4.170e-658.54Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S4E4A1_9STRA4.180e-654.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3DNX2_9STRA5.710e-660.61Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Amph... [more]
A0A7S0B1P1_9STRA7.500e-660.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1360contigP-wetherbeei_contig1360:7159..7290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FR88
PFAMsCarb_bind,Glyco_hydro_81
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K01180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.72e-10
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
EC3.2.1.6
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
Cds size132
COG categoryM
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.9970136-CDS-P-wetherbeei_contig1360:7158..72901683185991.9970136-CDS-P-wetherbeei_contig1360:7158..7290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1360 7159..7290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1360.1.1prot_P-wetherbeei_contig1360.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1360 7159..7290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1360.1.1

>prot_P-wetherbeei_contig1360.1.1 ID=prot_P-wetherbeei_contig1360.1.1|Name=mRNA_P-wetherbeei_contig1360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
QAIAGDWRGAWEMVSALPEDVYHTAGGNGHSRSNSLWFIATRM*
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mRNA from alignment at P-wetherbeei_contig1360:7159..7290-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1360.1.1 ID=mRNA_P-wetherbeei_contig1360.1.1|Name=mRNA_P-wetherbeei_contig1360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1360:7159..7290- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCATCGCGGGCGACTGGCGCGGGGCCTGGGAGATGGTGTCGGCACT
GCCCGAAGATGTCTACCACACTGCCGGCGGTAACGGCCACAGCCGCTCCA
ACTCGCTGTGGTTCATTGCCACGCGCATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1360:7159..7290-

>mRNA_P-wetherbeei_contig1360.1.1 ID=mRNA_P-wetherbeei_contig1360.1.1|Name=mRNA_P-wetherbeei_contig1360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1360:7159..7290- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCATCGCGGGCGACTGGCGCGGGGCCTGGGAGATGGTGTCGGCACT
GCCCGAAGATGTCTACCACACTGCCGGCGGTAACGGCCACAGCCGCTCCA
ACTCGCTGTGGTTCATTGCCACGCGCATGTGA
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