mRNA_P-wetherbeei_contig13584.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13584.2.1
Unique NamemRNA_P-wetherbeei_contig13584.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13584.2.1 vs. uniprot
Match: A0A3Q8S3D1_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus lentus TaxID=1338368 RepID=A0A3Q8S3D1_9BACL)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-8
Identity = 39/150 (26.00%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:   73 SLYDQQVSVVIPHGLHALTSKALTEDYPSKNRPQYAYKNGKGDFSVVFNHLSKPLLVKDLLPFHTQLKQQMEKQLPGIQWLNEKTQLVQGRSWELLEFKAHREGENLHNWIFLTSWKGRAFEVIVSAFDDIEGQVAVQVQATFASLKLVD 522
            SL++ Q+S+V+P     +T +     YPS+ RPQ  Y N     +V FNH + P+  K++  F   + Q + +    ++W  + T      +    EF       +++N++F  S +GRA     +  D          ++  ASL+L D
Sbjct:   58 SLFEDQLSLVMPSMFKPMTPQMAALKYPSERRPQLIYTNALSTINVAFNHTATPVRDKEIGEFTQGITQILRRTQKILKWYEDGTVQSPEATVGYCEFVTPVMNGSIYNFMFFMSLEGRALMCTFNCLDQEMNDWRPIAKSMMASLRLSD 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13584.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3Q8S3D1_9BACL1.170e-826.00Uncharacterized protein n=1 Tax=Paenibacillus lent... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13584contigP-wetherbeei_contig13584:1294..1818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1345695.CLSA_c08300
Model size525
Max annot lvl186801|Clostridia
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.52e-07
EggNOG OGs2EFPB@1|root,339FB@2|Bacteria,1V5BB@1239|Firmicutes,24BIN@186801|Clostridia,36HDD@31979|Clostridiaceae
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.3098536-CDS-P-wetherbeei_contig13584:1293..18181683185991.3098536-CDS-P-wetherbeei_contig13584:1293..1818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13584 1294..1818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13584.2.1prot_P-wetherbeei_contig13584.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13584 1294..1818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13584.2.1

>prot_P-wetherbeei_contig13584.2.1 ID=prot_P-wetherbeei_contig13584.2.1|Name=mRNA_P-wetherbeei_contig13584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MSWLRLLCLVLLLLPVQAFAQDEVSLYDQQVSVVIPHGLHALTSKALTED
YPSKNRPQYAYKNGKGDFSVVFNHLSKPLLVKDLLPFHTQLKQQMEKQLP
GIQWLNEKTQLVQGRSWELLEFKAHREGENLHNWIFLTSWKGRAFEVIVS
AFDDIEGQVAVQVQATFASLKLVD*
back to top

mRNA from alignment at P-wetherbeei_contig13584:1294..1818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13584.2.1 ID=mRNA_P-wetherbeei_contig13584.2.1|Name=mRNA_P-wetherbeei_contig13584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig13584:1294..1818+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCTCCGGCTACTCTGCCTCGTCCTGCTCTTACTCCCTGTCCA
GGCTTTTGCCCAGGATGAGGTCAGCCTCTACGACCAGCAGGTGAGTGTAG
TGATCCCTCACGGTCTTCATGCTCTGACCTCCAAAGCTCTCACCGAGGAT
TATCCGTCCAAGAACCGGCCGCAGTATGCTTACAAAAATGGCAAAGGTGA
CTTTAGCGTGGTTTTCAACCATCTTTCAAAGCCCTTGCTTGTCAAGGATC
TCCTACCGTTCCACACGCAGCTCAAGCAGCAGATGGAAAAACAGCTCCCG
GGAATCCAGTGGCTGAACGAAAAAACCCAGCTCGTCCAAGGACGGAGCTG
GGAATTACTGGAGTTCAAGGCTCATCGCGAAGGCGAGAACCTGCACAACT
GGATTTTTTTGACGTCCTGGAAGGGACGAGCCTTCGAGGTTATCGTTTCG
GCTTTCGATGATATCGAGGGTCAAGTCGCCGTTCAGGTGCAGGCGACTTT
TGCCTCTCTCAAGTTGGTCGACTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13584:1294..1818+

>mRNA_P-wetherbeei_contig13584.2.1 ID=mRNA_P-wetherbeei_contig13584.2.1|Name=mRNA_P-wetherbeei_contig13584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig13584:1294..1818+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCTCCGGCTACTCTGCCTCGTCCTGCTCTTACTCCCTGTCCA
GGCTTTTGCCCAGGATGAGGTCAGCCTCTACGACCAGCAGGTGAGTGTAG
TGATCCCTCACGGTCTTCATGCTCTGACCTCCAAAGCTCTCACCGAGGAT
TATCCGTCCAAGAACCGGCCGCAGTATGCTTACAAAAATGGCAAAGGTGA
CTTTAGCGTGGTTTTCAACCATCTTTCAAAGCCCTTGCTTGTCAAGGATC
TCCTACCGTTCCACACGCAGCTCAAGCAGCAGATGGAAAAACAGCTCCCG
GGAATCCAGTGGCTGAACGAAAAAACCCAGCTCGTCCAAGGACGGAGCTG
GGAATTACTGGAGTTCAAGGCTCATCGCGAAGGCGAGAACCTGCACAACT
GGATTTTTTTGACGTCCTGGAAGGGACGAGCCTTCGAGGTTATCGTTTCG
GCTTTCGATGATATCGAGGGTCAAGTCGCCGTTCAGGTGCAGGCGACTTT
TGCCTCTCTCAAGTTGGTCGACTAG
back to top