mRNA_P-wetherbeei_contig13575.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13575.2.1
Unique NamemRNA_P-wetherbeei_contig13575.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13575.2.1 vs. uniprot
Match: A0A353LR38_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LR38_9PROT)

HSP 1 Score: 207 bits (526), Expect = 6.750e-64
Identity = 89/147 (60.54%), Postives = 117/147 (79.59%), Query Frame = 1 
Query:   88 GDAEVTRRNRAGSALTGPQISSSAAGRTLNLLAGRLDVPGGNRLMNVKLNLFPDGTMRVALTYFHYKTFHKLVTSTRHFKGDGKWWVENNSLCLSAMVIDYGTINCYDLNQKPDGELDLYFSQCTGRSSSICRKDRLGAQGHFSSGI 528
            G A+ +++NR G+ALTG +IS++ +GRTLNL AGRLD+P GNRLM++K++L+PDGT RV L YFHYKTFH+  TSTR FKGDGKWW++ N  C  AMV+DYG +NCY+LNQ+ +G+L+LYF  C G SS+IC   RLGA+G   SG+
Sbjct:  137 GAADESKKNRPGTALTGQEISAAFSGRTLNLTAGRLDIPSGNRLMDMKIHLYPDGTSRVQLVYFHYKTFHREETSTRKFKGDGKWWIDGNKFCHRAMVVDYGAVNCYELNQRSNGDLELYFEGCAGNSSAICSNGRLGAKGRLQSGL 283
[Close]
BLAST of mRNA_P-wetherbeei_contig13575.2.1 vs. uniprot
Match: A0A3C0TS01_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS01_9PROT)

HSP 1 Score: 142 bits (359), Expect = 2.090e-41
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:  262 VALTYFHYKTFHKLVTSTRHFKGDGKWWVENNSLCLSAMVIDYGTINCYDLNQKPDGELDLYFSQCTGRSSS 477
            V LTYFHYKTFHKLV STR FKGDGKWWVENNSLCL AMVIDYGT+NCY++NQKPDG+LDLYF+ CTG+SSS
Sbjct:    1 VQLTYFHYKTFHKLVPSTRKFKGDGKWWVENNSLCLRAMVIDYGTVNCYEMNQKPDGKLDLYFADCTGKSSS 72
[Close]
BLAST of mRNA_P-wetherbeei_contig13575.2.1 vs. uniprot
Match: A0A2Z4UIJ5_9HYPH (Transport protein TonB n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UIJ5_9HYPH)

HSP 1 Score: 144 bits (363), Expect = 3.680e-39
Identity = 71/143 (49.65%), Postives = 95/143 (66.43%), Query Frame = 1 
Query:   85 GGDAEVTRRNRAGSALTGPQISSSAAGRTLNLLAGRLDVPGGNRLMNVKLNLFPDGTMRVALTYFHYKTFHKLVTSTRHFKGDGKWWVENNSLCLSAMVIDYGTINCYDLNQKPDGE-LDLYFSQCTGRSSSICRKDRLGAQG 510
            GG+ E T RNR G++LTG  IS+   G+TL L  GRLD+ GGNRL NV++ L  DGT RV L Y+HYKT+H+  +STR  +G G+WW+E N  C  + +I YGT +CYD+N   DG  L LY+++C   SS  C+  RL  +G
Sbjct:  160 GGNLEETIRNRPGNSLTGNAISARLTGQTLFLEMGRLDIQGGNRLTNVEIQLNADGTSRVKLIYYHYKTYHREHSSTRSKRGSGRWWIEGNRWCHQSEIISYGTKDCYDMNL--DGSVLRLYYAECLRNSSPHCKSYRLAGEG 300
[Close]
BLAST of mRNA_P-wetherbeei_contig13575.2.1 vs. uniprot
Match: A0A3C0TRX5_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TRX5_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 3.900e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   85 GGDAEVTRRNRAGSALTGPQISSSAAGRTLNLLAGRLDVPGGNRLMNVKLNLFPDGTMR 261
            GG  E ++RNRAGSALTG QISS+AAGRTLNLLAGRLD+PGGNRLMNVKL+LFPDG MR
Sbjct:   27 GGSDEESKRNRAGSALTGAQISSAAAGRTLNLLAGRLDIPGGNRLMNVKLDLFPDGMMR 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13575.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A353LR38_9PROT6.750e-6460.54Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A3C0TS01_9PROT2.090e-4184.72Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A2Z4UIJ5_9HYPH3.680e-3949.65Transport protein TonB n=3 Tax=Hyphomicrobiales Ta... [more]
A0A3C0TRX5_9PROT3.900e-2483.05Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13575contigP-wetherbeei_contig13575:1286..1819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene1889
Model size534
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-40
EggNOG OGs2F0QR@1|root,33TT5@2|Bacteria,1NV43@1224|Proteobacteria,2UR9K@28211|Alphaproteobacteria
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.024697-CDS-P-wetherbeei_contig13575:1285..18191683185991.024697-CDS-P-wetherbeei_contig13575:1285..1819Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13575 1286..1819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13575.2.1prot_P-wetherbeei_contig13575.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13575 1286..1819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13575.2.1

>prot_P-wetherbeei_contig13575.2.1 ID=prot_P-wetherbeei_contig13575.2.1|Name=mRNA_P-wetherbeei_contig13575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
TVEKEKAVAAKAAQAAAAGASKKQSGGDGGDAEVTRRNRAGSALTGPQIS
SSAAGRTLNLLAGRLDVPGGNRLMNVKLNLFPDGTMRVALTYFHYKTFHK
LVTSTRHFKGDGKWWVENNSLCLSAMVIDYGTINCYDLNQKPDGELDLYF
SQCTGRSSSICRKDRLGAQGHFSSGIE*
back to top

mRNA from alignment at P-wetherbeei_contig13575:1286..1819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13575.2.1 ID=mRNA_P-wetherbeei_contig13575.2.1|Name=mRNA_P-wetherbeei_contig13575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig13575:1286..1819- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTTGAAAAGGAAAAGGCCGTAGCGGCAAAAGCGGCGCAGGCAGCAGC
GGCCGGGGCTTCAAAAAAACAAAGCGGTGGCGACGGTGGGGATGCCGAAG
TAACCAGACGCAACCGCGCGGGATCGGCCTTGACGGGACCGCAAATATCC
TCGTCCGCAGCGGGTCGCACGCTTAATTTACTTGCAGGGCGTCTGGATGT
TCCGGGGGGCAACCGGCTGATGAATGTGAAATTGAATCTGTTCCCGGATG
GAACCATGCGGGTGGCGCTGACCTATTTTCATTACAAGACATTTCATAAA
CTTGTCACCTCAACCCGGCATTTTAAGGGCGACGGGAAATGGTGGGTCGA
AAATAACAGCCTGTGCCTGTCGGCCATGGTTATCGATTACGGCACCATCA
ATTGTTACGATCTGAACCAGAAACCCGATGGCGAGCTGGATTTGTATTTT
TCCCAATGCACGGGAAGGTCCTCTTCGATTTGCAGGAAGGACCGGCTGGG
CGCGCAGGGGCATTTTAGCTCCGGAATCGAGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13575:1286..1819-

>mRNA_P-wetherbeei_contig13575.2.1 ID=mRNA_P-wetherbeei_contig13575.2.1|Name=mRNA_P-wetherbeei_contig13575.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig13575:1286..1819- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTTGAAAAGGAAAAGGCCGTAGCGGCAAAAGCGGCGCAGGCAGCAGC
GGCCGGGGCTTCAAAAAAACAAAGCGGTGGCGACGGTGGGGATGCCGAAG
TAACCAGACGCAACCGCGCGGGATCGGCCTTGACGGGACCGCAAATATCC
TCGTCCGCAGCGGGTCGCACGCTTAATTTACTTGCAGGGCGTCTGGATGT
TCCGGGGGGCAACCGGCTGATGAATGTGAAATTGAATCTGTTCCCGGATG
GAACCATGCGGGTGGCGCTGACCTATTTTCATTACAAGACATTTCATAAA
CTTGTCACCTCAACCCGGCATTTTAAGGGCGACGGGAAATGGTGGGTCGA
AAATAACAGCCTGTGCCTGTCGGCCATGGTTATCGATTACGGCACCATCA
ATTGTTACGATCTGAACCAGAAACCCGATGGCGAGCTGGATTTGTATTTT
TCCCAATGCACGGGAAGGTCCTCTTCGATTTGCAGGAAGGACCGGCTGGG
CGCGCAGGGGCATTTTAGCTCCGGAATCGAGTAA
back to top