mRNA_P-wetherbeei_contig13570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13570.1.1
Unique NamemRNA_P-wetherbeei_contig13570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 400 bits (1029), Expect = 2.200e-124
Identity = 212/268 (79.10%), Postives = 229/268 (85.45%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAANITHSAPMDIFQ 837
            FDQRPYFRLLL LLQ  NAPDR+LDSSNLQVLAAFASAFH LQP  AP FAFAWLELVSHR FMPTLLLA+QQKGWMLMHRLLVDL  F+EP LRRA L  AV+ LY+GMLRVLLVLLHDFPEFL EYH S CDVIPP+CIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQ PRILSNY+AAL    +  DLD YLQTR P  FL ELPARLRL +V +AA  G  ++V  ++ALVVYVGSQAI Q+Q+KAANITHSAPMD+FQ
Sbjct: 2280 FDQRPYFRLLLSLLQDFNAPDRVLDSSNLQVLAAFASAFHVLQPATAPAFAFAWLELVSHRMFMPTLLLARQQKGWMLMHRLLVDLLSFMEPRLRRAALGGAVRTLYRGMLRVLLVLLHDFPEFLCEYHFSLCDVIPPSCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNYTAALVSSGISADLDKYLQTRGPAQFLVELPARLRLPAV-DAARTGSQHNVQALSALVVYVGSQAIAQMQSKAANITHSAPMDVFQ 2546          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 3.820e-119
Identity = 198/271 (73.06%), Postives = 227/271 (83.76%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPA-FLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAANITHSAPMDIFQQV 843
            FDQRPYFR+ L L++ +N PDR LD++NLQVLAAF SAFHALQP   PGFAF+WLELVSHRSFMP LLL KQ KGW  MHRLL+DL +F+EP LRR  L  +V++LY+GMLR LLVLLHDFPEFLS+YHLSFCDVIP  CIQLRNL+L+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSNY AAL+H +++QDLD +LQTRH PA FL ELPA+LRL S QEAA  G  Y+V C+N+LVVYVGSQAI QL NK   ITHSAPMD+F Q+
Sbjct: 2475 FDQRPYFRIFLDLVEEMNKPDRQLDNTNLQVLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRL-SAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTPIITHSAPMDVFHQL 2744          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A7S2WB04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB04_9STRA)

HSP 1 Score: 355 bits (910), Expect = 9.740e-111
Identity = 186/280 (66.43%), Postives = 223/280 (79.64%), Query Frame = 1
Query:    7 GAXXXXPKQFDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQ-QKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAAN--ITHSAPMDIFQ 837
            G     P  FDQRPYFR+   LL+ L APD ++D++NLQVL AFA+AFH LQP + P FAF+WLEL+SHR+FMPTLLLAK  QKGWMLMHRLLVDLF+F+EP+LRR++L  A++ LYKG LRVLLVLLHDFPEFL +YH SFCDVIPP CIQLRNL LSAFPR+MRLPDPFTPNLKVDLLPEI+Q PRILSNY AAL++  +RQ+LD YL+ R P +FL  LP RLR  S  +AA+   +Y+V+ +NALVVY+GSQ+I+QLQ    N  I H   MD+FQ
Sbjct:  710 GPRGARPMAFDQRPYFRVFANLLRDLTAPDPVVDANNLQVLGAFANAFHGLQPQSVPAFAFSWLELISHRTFMPTLLLAKPAQKGWMLMHRLLVDLFVFMEPYLRRSQLPLAIKTLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQLRNLFLSAFPRTMRLPDPFTPNLKVDLLPEIAQPPRILSNYVAALSYNGIRQELDNYLKNRAPKSFLEWLPGRLRA-SPSQAASGSASYNVASINALVVYIGSQSILQLQKSPQNTAIGHLPTMDVFQ 988          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: D8LMN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN2_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 2.380e-106
Identity = 179/240 (74.58%), Postives = 201/240 (83.75%), Query Frame = 1
Query:  124 VLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPA-FLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAANITHSAPMDIFQQ 840
            VLAAF SAFHALQP   PGFAF+WLELVSHRSFMP LLL KQ KGW  MHRLL+DL +F+EP LRR  L  +V++LY+GMLR LLVLLHDFPEFLS+YHLSFCDVIP  CIQLRNL+L+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSNY AAL+H +++QDLD +LQTRH PA FL ELPA+LRL S QEAA  G  Y+V C+N+LVVYVGSQAI QL NK   ITHSAPMD+F Q
Sbjct:  987 VLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRL-SAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTPIITHSAPMDVFHQ 1225          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A6S8SJ33_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SJ33_9STRA)

HSP 1 Score: 343 bits (880), Expect = 1.410e-104
Identity = 185/272 (68.01%), Postives = 211/272 (77.57%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAAN----ITHSAPMDIFQ 837
            FDQRPYFRL L LLQ LN PD +LDSSN +VLAAFA+  HALQP   PGFAF+WLELVSHR FMP LLLAK QKGW LMHRLLVDLF+F+EP+LR+ +L+ A ++LYKG LRVLLVLLHDFPEFLS+YH SFCDVIP +CIQLRNL LSAFPRSMRLPDPFTPNLKVDLLPEISQ PRILSN   AL   +LR+ LD YL TRHP +FL +LP +L   +         +Y+V  VN+LVV+VG  AI QL  K+ N    I HS PMD+FQ
Sbjct: 1301 FDQRPYFRLFLNLLQDLNVPDPVLDSSNPRVLAAFATVLHALQPAVTPGFAFSWLELVSHRMFMPNLLLAKNQKGWALMHRLLVDLFVFLEPYLRQVQLSDAARLLYKGALRVLLVLLHDFPEFLSDYHFSFCDVIPSSCIQLRNLFLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNCVIALEACALREPLDEYLLTRHPISFLLDLPRKLLDANTNNDHVIT-SYNVPLVNSLVVHVGMTAISQLHTKSGNLQQPIAHSTPMDVFQ 1571          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A7S1C365_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C365_9STRA)

HSP 1 Score: 333 bits (854), Expect = 1.360e-103
Identity = 182/274 (66.42%), Postives = 212/274 (77.37%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAAL-AHGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAAN---ITHSAPMDIFQQV 843
            FDQRP++RLLL LL  LN PD +LD  N+Q LA+FA+  H LQP+  P FAFAWL+L +HRS MP LLLAKQQKGW L+ RL+ DL  F+ PFLR  E   AV+++YKG LRVLLVLLHDFPEFL +YH +FCDVIPPTCIQLRNL+LSAFPR+MRLPDPFTPNLKVDLLPEISQ P ILS+ + AL AHG L  DL  YL+TR PPAFL  L ARL L S +EA  AG  Y+V  +N LV+YVG QAI QLQ++A+    I HSAPMDIFQQ+
Sbjct:  462 FDQRPHYRLLLNLLVDLNTPDPVLDKLNVQFLASFANILHVLQPSRVPQFAFAWLDLFAHRSLMPKLLLAKQQKGWQLVQRLVTDLLSFLYPFLRSGETNDAVRLIYKGTLRVLLVLLHDFPEFLCDYHFAFCDVIPPTCIQLRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQPPHILSDVTRALHAHGLL-DDLHTYLRTRGPPAFLGGLAARLLL-SPEEAVEAGTRYAVPAINGLVLYVGKQAIAQLQDEASGASPIAHSAPMDIFQQL 733          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A7S3NMR3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMR3_9STRA)

HSP 1 Score: 336 bits (861), Expect = 4.140e-102
Identity = 175/273 (64.10%), Postives = 211/273 (77.29%), Query Frame = 1
Query:   37 DQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNK------AANITHSAPMDIFQ 837
            +QRPYFR+ + LL  LN PD +LDSSN +V+ AFA+ FHALQP+  P FAF+WLEL+SHR F+P +LL K QKGW++MHRLLVDLF+F+EP+LRR ELT A++ LYKG LRVLLVLLHDFPEFLS++H SFCD+IP +CIQLRNL LSAFPRSMRLPDPFTPNLKVDLLPEISQ PR+LSN  AAL    LR+ LD YL+TRHP +FL ELP +L   ++        +Y +  VNALVV++G+ AI QL  K      A  I HSAPMD+FQ
Sbjct: 1199 EQRPYFRIFIDLLHDLNVPDPMLDSSNPRVICAFATCFHALQPSVLPVFAFSWLELISHRMFLPNVLLIKNQKGWIIMHRLLVDLFVFLEPYLRRIELTDAIRTLYKGTLRVLLVLLHDFPEFLSDFHHSFCDLIPSSCIQLRNLFLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRVLSNCVAALDAFDLRESLDEYLRTRHPISFLLELPRKLTKIAINTKEKDVSSYEIPLVNALVVHIGTTAIAQLHAKSQAGASAGPIAHSAPMDVFQ 1471          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A7S0F4P5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F4P5_9EUKA)

HSP 1 Score: 311 bits (797), Expect = 9.310e-100
Identity = 173/276 (62.68%), Postives = 206/276 (74.64%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALA-HGSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNK-----AANITHSAPMDIFQQV 843
            F QR YFRL    L  LNAPD  LD    QVL+AF +AFHALQP   PGFAF+W+ELVSHR FMP LLL K QKGW LM RLLV LF F+ P+L  AEL+P V+MLY+G LRVLLVLLHDFPEFL +YH +FCDVIPP+CIQ+RNL+LSAFPR+MRLPDPFTPNLKVDLLPEISQ PRILS+YSAAL+ + +L  +LDA+L++R P +FL +L  RL          A     V  VNALV++VG+ AI  LQ++     AA + HSAPMD+FQQ+
Sbjct:  152 FHQRAYFRLFSGWLFDLNAPDPTLDPIQPQVLSAFCAAFHALQPARLPGFAFSWMELVSHRMFMPKLLLTKGQKGWPLMQRLLVGLFKFLHPYLSAAELSPPVRMLYRGALRVLLVLLHDFPEFLCDYHFAFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQPPRILSSYSAALSSNNTLLAELDAFLKSRQPRSFLDQLHLRLL--------GADGNVRVPLVNALVLHVGTNAIAALQSQPASQAAAGLAHSAPMDVFQQL 419          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: W7TUR4_9STRA (Ccr4-not transcription n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUR4_9STRA)

HSP 1 Score: 320 bits (821), Expect = 1.870e-96
Identity = 181/303 (59.74%), Postives = 214/303 (70.63%), Query Frame = 1
Query:    1 GGGAXXXXPKQFDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPA-FLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNKAAN-----------------------ITHSAPMDIFQ 837
            G  A    P  F  RPYFRLL+ LL   NA D  LD++N+QVL AFA A + LQP   P FAFAWLEL+SHR FMP LLLAK QKGW+LMHRLL+DLF F+EPFLR+AELT  +++LYKG LRVLLVLLHDFPEFL +YH+SFCDVIPP+CIQLRNL+LSAFPR+MRLPDPFTPNLKVDLLPEI+Q PRI + Y+ AL   SL+ ++DAYL+TR  PA FL ELP +L+  +       G AY+   +NALV+YVG+ AI Q+QN  A                          HSAPMDIFQ
Sbjct: 2243 GNQAAPSGPADF--RPYFRLLVDLLHDFNAFDPALDTNNIQVLTAFAIACNNLQPALVPAFAFAWLELISHRMFMPALLLAKGQKGWILMHRLLMDLFSFLEPFLRKAELTDPIRILYKGTLRVLLVLLHDFPEFLCDYHVSFCDVIPPSCIQLRNLILSAFPRNMRLPDPFTPNLKVDLLPEITQPPRIPAGYTGALL--SLKHEVDAYLKTRAQPAYFLTELPKKLKANTGD-----GQAYNTPAMNALVIYVGTMAIAQIQNTTAAGGXXXXXXXXXXXXXXXTTSMAITAHSAPMDIFQ 2536          
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Match: A0A2G3DJ81_CAPCH (CCR4-NOT transcription complex subunit 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3DJ81_CAPCH)

HSP 1 Score: 302 bits (774), Expect = 1.250e-95
Identity = 168/271 (61.99%), Postives = 198/271 (73.06%), Query Frame = 1
Query:   34 FDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAFHALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLFVEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPTCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAHGSLRQDLDAYLQTRHPPA-FLAELPARLRLRSVQEAAAAGCAYSVSCVNALVVYVGSQAIVQLQNK---AANITHSAPMDIF 834
            F+ RPYFRL +  L  L++ D + D +N  VL A A+AFHALQP   PGF+FAWLELVSHRSFMP LL    QKGW    RLLVDLF F+EPFLR AEL   VQ LYKG LRVLLVLLHDFPEFL +YH SFCDVIPP+CIQ+RN++LSAFPR+MRLPDP TPNLK+DLL EISQSPRILS   AAL    ++ D+D YL+TR   + FL+EL  +L L S  EAA AG  Y+V  +N+LV+YVG QAI QLQ K   A ++  S P  +F
Sbjct:  200 FNPRPYFRLFINWLVDLSSLDPVFDGANFHVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQKLLL-SPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAVF 469          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHM2_9STRA2.200e-12479.10CCR4-Not complex component, Not1-domain-containing... [more]
A0A6H5JXN6_9PHAE3.820e-11973.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WB04_9STRA9.740e-11166.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LMN2_ECTSI2.380e-10674.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S8SJ33_9STRA1.410e-10468.01Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S1C365_9STRA1.360e-10366.42Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3NMR3_9STRA4.140e-10264.10Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0F4P5_9EUKA9.310e-10062.68Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
W7TUR4_9STRA1.870e-9659.74Ccr4-not transcription n=2 Tax=Monodopsidaceae Tax... [more]
A0A2G3DJ81_CAPCH1.250e-9561.99CCR4-NOT transcription complex subunit 1 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13570contigP-wetherbeei_contig13570:146..1649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMN2
PFAMsCNOT1_CAF1_bind,CNOT1_HEAT,CNOT1_TTP_bind,DUF3819,Not1
Model size843
Max annot lvl2759|Eukaryota
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
Exons3
Evalue3.9e-107
EggNOG OGsCOG5103@1|root,KOG1831@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cds size843
COG categoryDK
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.909381-CDS-P-wetherbeei_contig13570:145..2681683185990.909381-CDS-P-wetherbeei_contig13570:145..268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13570 146..268 +
1683185990.918837-CDS-P-wetherbeei_contig13570:620..10281683185990.918837-CDS-P-wetherbeei_contig13570:620..1028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13570 621..1028 +
1683185990.926879-CDS-P-wetherbeei_contig13570:1337..16491683185990.926879-CDS-P-wetherbeei_contig13570:1337..1649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13570 1338..1649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13570.1.1prot_P-wetherbeei_contig13570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13570 146..1649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13570.1.1

>prot_P-wetherbeei_contig13570.1.1 ID=prot_P-wetherbeei_contig13570.1.1|Name=mRNA_P-wetherbeei_contig13570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
GGGAAPPPPKQFDQRPYFRLLLCLLQHLNAPDRLLDSSNLQVLAAFASAF
HALQPTAAPGFAFAWLELVSHRSFMPTLLLAKQQKGWMLMHRLLVDLFLF
VEPFLRRAELTPAVQMLYKGMLRVLLVLLHDFPEFLSEYHLSFCDVIPPT
CIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQSPRILSNYSAALAH
GSLRQDLDAYLQTRHPPAFLAELPARLRLRSVQEAAAAGCAYSVSCVNAL
VVYVGSQAIVQLQNKAANITHSAPMDIFQQV
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mRNA from alignment at P-wetherbeei_contig13570:146..1649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13570.1.1 ID=mRNA_P-wetherbeei_contig13570.1.1|Name=mRNA_P-wetherbeei_contig13570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1504bp|location=Sequence derived from alignment at P-wetherbeei_contig13570:146..1649+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCGGGGCGGCACCGCCGCCGCCCAAGCAGTTCGACCAGCGGCCGTA CTTCCGGCTGCTGCTGTGCCTGCTGCAGCACCTCAACGCCCCGGACCGGC TGCTCGACAGCAGCAACCTCCAGGTGGCTATTCCTTCGATTGTCGTTCGC ATGGGCGTGATTAACGGTGTCTCGCTTTCCTCGCCGGGGAAGGGAGTCGT CAAGAGAGGATGGGCGTGTTTGTTTTGCTGGTGTTTCACTTTTTCCTGTG CTTTCAGGAATATGGTGTTGTTCATATCACCCTTCGCAGTAATGCTGGTC TGTCTGCTCTCATCTTAACACCTGCGTTAGGTCGTAGAGTCCGCTATGGT GAAGAAACCGGCTTGTTTTGGGACGAGACACTGCTGTTACCCACTTTGCT CCTTCCCTTTCCCTCTGCTCCCCGTCTCTCCCGCTTTCTGGGCAACACAA CCAACAAACGGAACAAACCGGCCAGGTACTGGCTGCGTTCGCATCGGCCT TCCACGCGCTGCAGCCGACGGCAGCGCCGGGCTTTGCCTTTGCGTGGCTC GAGCTCGTCTCGCACCGCTCCTTCATGCCGACGCTGCTCCTCGCCAAGCA GCAGAAAGGTTGGATGCTCATGCACCGCCTGCTGGTCGACCTCTTCCTCT TCGTCGAGCCGTTCCTGCGGCGCGCGGAGCTGACGCCGGCCGTCCAGATG CTGTACAAGGGCATGCTGCGCGTGCTGCTGGTGCTGCTGCACGACTTTCC CGAGTTCCTGTCTGAGTACCACCTGAGCTTCTGCGACGTGATCCCGCCGA CGTGCATCCAGCTCCGCAACTTGGTGCTGTCGGCGTTCCCACGAAGCATG CGCCTGCCGGACCCCTTCACGCCCAACCTCAAGGTACGCGTAGGTTCTTC CTGTACCATTCCGGCTGTCCAGTTCCATTTCAACGACGCGTTCTGTTCTC TTTCTTCCCCCGTTTTCTTCTTGCTTTCCTCACATCAGTGTGGTGTCTGG GCTAGGAAGACACGCGTGATATGCGCTTTGGTGCTGTCACCGGCTTGGCT GACTTCCTTTGTGCTGTCATTCTCTTGCTCACCTTCTTTCGCACTTAATT TTCCTCTTTCCTCTTCTCCCCTCTTTCCGCTCCTTCTTGTCACTTCACCT CCTTTCCTCTTTCCTCAACTCCCTCGCTCTTCTCCCCACCAGGTGGACCT GCTGCCGGAGATCAGCCAGTCGCCGCGCATCCTGTCTAACTACTCGGCAG CGCTCGCGCACGGCAGCCTCCGCCAGGACCTCGATGCCTACCTCCAGACG CGCCACCCCCCGGCCTTCCTGGCGGAGCTTCCGGCGCGGCTGCGGCTGCG GTCAGTGCAGGAGGCGGCGGCGGCAGGTTGCGCGTACAGCGTGTCGTGCG TCAACGCGCTGGTGGTGTATGTCGGGAGTCAGGCCATCGTCCAGCTGCAG AACAAGGCGGCCAACATCACGCACTCGGCCCCCATGGACATCTTCCAGCA GGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13570:146..1649+

>mRNA_P-wetherbeei_contig13570.1.1 ID=mRNA_P-wetherbeei_contig13570.1.1|Name=mRNA_P-wetherbeei_contig13570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig13570:146..1649+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCGGGGCGGCACCGCCGCCGCCCAAGCAGTTCGACCAGCGGCCGTA
CTTCCGGCTGCTGCTGTGCCTGCTGCAGCACCTCAACGCCCCGGACCGGC
TGCTCGACAGCAGCAACCTCCAGGTACTGGCTGCGTTCGCATCGGCCTTC
CACGCGCTGCAGCCGACGGCAGCGCCGGGCTTTGCCTTTGCGTGGCTCGA
GCTCGTCTCGCACCGCTCCTTCATGCCGACGCTGCTCCTCGCCAAGCAGC
AGAAAGGTTGGATGCTCATGCACCGCCTGCTGGTCGACCTCTTCCTCTTC
GTCGAGCCGTTCCTGCGGCGCGCGGAGCTGACGCCGGCCGTCCAGATGCT
GTACAAGGGCATGCTGCGCGTGCTGCTGGTGCTGCTGCACGACTTTCCCG
AGTTCCTGTCTGAGTACCACCTGAGCTTCTGCGACGTGATCCCGCCGACG
TGCATCCAGCTCCGCAACTTGGTGCTGTCGGCGTTCCCACGAAGCATGCG
CCTGCCGGACCCCTTCACGCCCAACCTCAAGGTGGACCTGCTGCCGGAGA
TCAGCCAGTCGCCGCGCATCCTGTCTAACTACTCGGCAGCGCTCGCGCAC
GGCAGCCTCCGCCAGGACCTCGATGCCTACCTCCAGACGCGCCACCCCCC
GGCCTTCCTGGCGGAGCTTCCGGCGCGGCTGCGGCTGCGGTCAGTGCAGG
AGGCGGCGGCGGCAGGTTGCGCGTACAGCGTGTCGTGCGTCAACGCGCTG
GTGGTGTATGTCGGGAGTCAGGCCATCGTCCAGCTGCAGAACAAGGCGGC
CAACATCACGCACTCGGCCCCCATGGACATCTTCCAGCAGGTG
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